Csa1G423060.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G423060.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR008480 (Protein of unknown function DUF761, plant)
Location	Chr1 : 15382031 .. 15382393 (+)
Sequence length	363

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGATTAGCTTATTGGGTCGGCTGAGGAAGGCGGTGAAGAAGATTAGATTCATGATGAATTTTAGCATTCAAAGATGGCGGTTAGCGGCGATGTTAGGCCGGACTTCGTCGAGAAATCTCCGTCTTAGCTTCACCGAACGTCCGGGATTAAAGGCTTGTTCGGAAGATATTATTATGGAAGAAGAACAGTCGGTTTCTTCTTCATCTCGTGGGCTACAAAGAACCACCAGCTACGCTTCTGAAGATGACGTGGACTCCCGTGCGGAGGCTTTTATTGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGAAATAGTTTTGATTAA

mRNA sequence

ATGGAGGCGATTAGCTTATTGGGTCGGCTGAGGAAGGCGGTGAAGAAGATTAGATTCATGATGAATTTTAGCATTCAAAGATGGCGGTTAGCGGCGATGTTAGGCCGGACTTCGTCGAGAAATCTCCGTCTTAGCTTCACCGAACGTCCGGGATTAAAGGCTTGTTCGGAAGATATTATTATGGAAGAAGAACAGTCGGTTTCTTCTTCATCTCGTGGGCTACAAAGAACCACCAGCTACGCTTCTGAAGATGACGTGGACTCCCGTGCGGAGGCTTTTATTGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGAAATAGTTTTGATTAA

Coding sequence (CDS)

ATGGAGGCGATTAGCTTATTGGGTCGGCTGAGGAAGGCGGTGAAGAAGATTAGATTCATGATGAATTTTAGCATTCAAAGATGGCGGTTAGCGGCGATGTTAGGCCGGACTTCGTCGAGAAATCTCCGTCTTAGCTTCACCGAACGTCCGGGATTAAAGGCTTGTTCGGAAGATATTATTATGGAAGAAGAACAGTCGGTTTCTTCTTCATCTCGTGGGCTACAAAGAACCACCAGCTACGCTTCTGAAGATGACGTGGACTCCCGTGCGGAGGCTTTTATTGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGAAATAGTTTTGATTAA

Protein sequence

MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDIIMEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD*

Homology

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BLAST of Csa1G423060.1 vs. TrEMBL
Match: A0A0A0LUK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423060 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120
           MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

[Close]

BLAST of Csa1G423060.1 vs. TrEMBL
Match: A0A061GQY6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_039000 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-31
Identity = 73/120 (60.83%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           ME  SLL RLR+AVKK++F++NF++ RWR+A+M+G + S   RLSFT+RPGL+AC++D  
Sbjct: 1   MEKWSLLSRLRRAVKKVKFLLNFNMNRWRIASMIGASPSSQ-RLSFTDRPGLRACADDY- 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120
                S  S SR L RTTSY SEDD+D RAE FIANF++QL+IERQVSL+L+Y R NSFD
Sbjct: 61  ----DSDDSGSRRLARTTSYLSEDDIDKRAEMFIANFHKQLQIERQVSLQLKYLRANSFD 114

[Close]

BLAST of Csa1G423060.1 vs. TrEMBL
Match: A0A0D2R228_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G100700 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 71/120 (59.17%), Postives = 93/120 (77.50%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           M+   LL RLR+AV K++ ++NF++ RWR+A+M+G TS  + RLSFT+RPGL+AC++D  
Sbjct: 1   MDKWYLLSRLRRAVNKVKVLLNFNMNRWRIASMIG-TSRSSKRLSFTDRPGLRACADD-- 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120
            + E S    +R L RTTSY SEDD+D RAE FIANF+RQL+IERQVSLEL+Y R NSFD
Sbjct: 61  NDSEDSGYCCNR-LARTTSYPSEDDIDKRAEMFIANFHRQLQIERQVSLELKYLRLNSFD 116

[Close]

BLAST of Csa1G423060.1 vs. TrEMBL
Match: A0A067DY34_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041618mg PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.9e-28
Identity = 64/123 (52.03%), Postives = 88/123 (71.54%), Query Frame = 1


Query: 5   SLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDIIMEEE 64
           S+L RLR AV+K++ ++N S+ RWR+A+ +   S    RLSF +RPGL+AC++D   +E 
Sbjct: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYADES 62

Query: 65  QSVSSSS-------RGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGN 121
            + S+S+         L RT SY SEDD+D RAE FIANF+RQL+IERQ+SLEL+YCR N
Sbjct: 63  STDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRAN 122

[Close]

BLAST of Csa1G423060.1 vs. TrEMBL
Match: V4U1F3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009891mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-27
Identity = 66/123 (53.66%), Postives = 87/123 (70.73%), Query Frame = 1


Query: 5   SLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDIIMEEE 64
           S+L RLR AV+K++ ++N S+ RWR+A+ +   S    RLSF +RPGL+AC++D   +E 
Sbjct: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGGKRRLSFNDRPGLRACTDDNYADES 62

Query: 65  Q----SVSSSSRG---LQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGN 121
                SV   S G   L RT SY SEDD+D RAE FIANF+RQL+IERQ+SLEL+YCR N
Sbjct: 63  SPDSASVGPRSHGGGSLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRAN 122

[Close]

BLAST of Csa1G423060.1 vs. TAIR10
Match: AT5G57510.1 (AT5G57510.1 unknown protein)

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26
Identity = 66/119 (55.46%), Postives = 85/119 (71.43%), Query Frame = 1


Query: 5   SLLGRLRKAVKKIRFMMNFSIQR-WRLAAMLGRTSSRN-LRLSFTERPGLKACSEDIIME 64
           SLL RLR+AV K++F+++F I   W L  MLG +SS + LRLSF +RPGL A       E
Sbjct: 8   SLLNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAA----FTE 67

Query: 65  EEQSVSSSSRG-LQRTTSY--ASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNS 119
            E   + SSRG L RT SY  +S++D+D++AE FIANFYRQL+IERQ+SLEL+YC+GN+
Sbjct: 68  NEPDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNN 122

[Close]

BLAST of Csa1G423060.1 vs. NCBI nr
Match: gi|778665135|ref|XP_011648497.1| (PREDICTED: uncharacterized protein LOC101218317 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120
           MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

[Close]

BLAST of Csa1G423060.1 vs. NCBI nr
Match: gi|659107312|ref|XP_008453609.1| (PREDICTED: uncharacterized protein LOC103494271 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLK-ACSEDI 60
           MEAISLLGRLRKAVKKI+FMMNFSIQRWRLAAMLGRTSSRNLRLSF ERPGLK ACSEDI
Sbjct: 1   MEAISLLGRLRKAVKKIKFMMNFSIQRWRLAAMLGRTSSRNLRLSFNERPGLKAACSEDI 60

Query: 61  IMEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSF 120
           IMEEE  VSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCR NSF
Sbjct: 61  IMEEE-PVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRRNSF 120

[Close]

BLAST of Csa1G423060.1 vs. NCBI nr
Match: gi|747047839|ref|XP_011069905.1| (PREDICTED: uncharacterized protein LOC105155682 [Sesamum indicum])

HSP 1 Score: 155.6 bits (392), Expect = 5.5e-35
Identity = 78/124 (62.90%), Postives = 100/124 (80.65%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           +E  SL+GRL++AVKKI+F+++F++ RW+LA+M+GRTSSR  RLSF +RPGL+AC     
Sbjct: 4   VERWSLVGRLKRAVKKIKFLLDFNVNRWKLASMIGRTSSRKRRLSFNDRPGLRAC----- 63

Query: 61  MEEEQSVSS----SSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRG 120
           MEE+Q  +     SSRGL RT SY SEDD+D RA+AFIANF+RQLR ERQ+SLEL+Y RG
Sbjct: 64  MEEDQDPNDHDPGSSRGLHRTISYPSEDDIDKRADAFIANFHRQLRFERQISLELRYYRG 122

[Close]

BLAST of Csa1G423060.1 vs. NCBI nr
Match: gi|590580886|ref|XP_007014194.1| (Uncharacterized protein TCM_039000 [Theobroma cacao])

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-31
Identity = 73/120 (60.83%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           ME  SLL RLR+AVKK++F++NF++ RWR+A+M+G + S   RLSFT+RPGL+AC++D  
Sbjct: 1   MEKWSLLSRLRRAVKKVKFLLNFNMNRWRIASMIGASPSSQ-RLSFTDRPGLRACADDY- 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120
                S  S SR L RTTSY SEDD+D RAE FIANF++QL+IERQVSL+L+Y R NSFD
Sbjct: 61  ----DSDDSGSRRLARTTSYLSEDDIDKRAEMFIANFHKQLQIERQVSLQLKYLRANSFD 114

[Close]

BLAST of Csa1G423060.1 vs. NCBI nr
Match: gi|225446076|ref|XP_002272519.1| (PREDICTED: uncharacterized protein LOC100264996 [Vitis vinifera])

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-31
Identity = 72/116 (62.07%), Postives = 90/116 (77.59%), Query Frame = 1


Query: 5   SLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDIIMEEE 64
           SLL RLR+AVKK+ F++NF I RW +A+ML RTSS   R SF +RPGL+ C+ED   E++
Sbjct: 11  SLLSRLRRAVKKVGFLLNFGIHRWHVASML-RTSSETRRFSFNDRPGLRGCTEDTDSEDQ 70

Query: 65  QSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 121
                SSRG+QRT S   E+DVD RAE FIANFYRQL++ERQVSLEL+YC+GNSF+
Sbjct: 71  PG---SSRGIQRTISGPCEEDVDKRAEVFIANFYRQLQMERQVSLELRYCKGNSFE 122

The following BLAST results are available for this feature:

BLAST of Csa1G423060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUK4_CUCSA	1.4e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423060 PE=4 SV=1	[more]
A0A061GQY6_THECC	1.5e-31	60.83	Uncharacterized protein OS=Theobroma cacao GN=TCM_039000 PE=4 SV=1	[more]
A0A0D2R228_GOSRA	2.0e-28	59.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G100700 PE=4 SV=1	[more]
A0A067DY34_CITSI	5.9e-28	52.03	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041618mg PE=4 SV=1	[more]
V4U1F3_9ROSI	1.7e-27	53.66	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009891mg PE=4 SV=1	[more]

BLAST of Csa1G423060.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57510.1	1.7e-26	55.46	unknown protein	[more]

BLAST of Csa1G423060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665135\|ref\|XP_011648497.1\|	2.1e-58	100.00	PREDICTED: uncharacterized protein LOC101218317 [Cucumis sativus]	[more]
gi\|659107312\|ref\|XP_008453609.1\|	1.3e-52	95.04	PREDICTED: uncharacterized protein LOC103494271 [Cucumis melo]	[more]
gi\|747047839\|ref\|XP_011069905.1\|	5.5e-35	62.90	PREDICTED: uncharacterized protein LOC105155682 [Sesamum indicum]	[more]
gi\|590580886\|ref\|XP_007014194.1\|	2.2e-31	60.83	Uncharacterized protein TCM_039000 [Theobroma cacao]	[more]
gi\|225446076\|ref\|XP_002272519.1\|	4.8e-31	62.07	PREDICTED: uncharacterized protein LOC100264996 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G423060	Csa1G423060	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G423060.1	Csa1G423060.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G423060.1.cds1	Csa1G423060.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 83..114 score: 3.9
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 5..119 score: 1.6
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 5..119 score: 1.6