MELO3C025659.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025659.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	zinc finger protein VAR3, chloroplastic
Location	chr07 : 4543582 .. 4546022 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCCTCGTCTTCACAAACTTCTACCCGTCTATGTCTCGCTTCAGACCTCTTTACTCTCAAATCCTACTCTTCAATTCACAATCCACTATTTCCCTTCAATTTCACCTTCTTCCTTCTACTTCTCGATCTTTCTCGCTGAAAATCGGGGAGGGGATTGAACCAGAAATTGTCCCCGCTAAGACGAATACACCGCCGGCGTTTCTGTCTAGGGAAGCCGCGAATTCGAACGGAAGTGTAAAATCTCTAGAAGGAAAAGGTGGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCGGAAGGAAACAAGAAATTAGCGAGGGAGGATGCTTTGCTCCGCAAAGAGCTCTCTCCGGATATGGAGATGTTTGCGAGACATTTGTACAGGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGTTAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCGTGGACGGAATTTTATCAAGTCTACAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAGTAAGAAGAGTTTTGATTTTTGCTTTTTCAATGTGGTATCTCTGTTGTGTTTTCGTTTTTGTGTAATGTTTTGAGAATTGGTGTGAGATCATCATATATCTGATGAAGTGGATAGCTTTAATCTTTTGCTAATGACAATTTCATTTATAGAGTATGAAGTGCTGTGAAATTTGGATATATTGTGTGTGGAAGAATGAAACAAGGAAAAATTTTGTTTTTCTTTTGAATCAGTTTCATGATTTGGCTTGTGTATTGACATTGGGAAACTATACTTAATTCTAGTTTGAGGTTTTTCAAAACATACTCTGTGCATCTTGCGGTGGTAATTAAGACAGAGAAGAAATTGAGGTCATTTCATATTGGGGGTTGATTACTCTAACTAACTACATTTAGTATCCTAAATGTAAAAATGATAGTTTGAATCATTTTTAGATGCATTCATTTTTTGGATAGGAGTTTCTTTTTCGAAGCATTAGTTTCATATTACGAGTATGAAAGCTATGAAAATATATTTCTTCTTCACTTTTGAAAGGACTATGGTCAAACTTGGAAGTTTGATTTTCCATAACTCAAATATTAGAATATCTGCTGCTATTATTGTTCCCTAACAAGTTGTTTTTGCTTTGTTCGATTGGTTCATCTTTCAAAAGTTACTGTACAAGTCGGTTCTATGTTGATATTCAACTTAGTGAGCAATTTTAATGGTTCGATCTCCCACCCCTATCATTGTTGAACTAAAAATGATACCCATTTACCAACCCATATTGTTTAATTAGTTTTGGCATCAGTAACCTTGACTAAATAGTTATCCATCTAAGACATAACTGACCTAAACCGACCTATCTTGGTTTTTCTTTCCTAGCTAATCTCTCTGCTTGATAATTGCTTGAATCCTTATGGTTCAAGACATTAATGTGTCAGATTATTAAGTGTAGCGTACATAAAAGTGTAATATTCCTAATAAGTTACAAAATCTAACAATCTGATTTCAAAGGAAATAATTTTTTGTATTTCATCTTTCTGGTTATGGCAGTTGTGTTTCTTTATGAAGACATCCCCCAATTGTTTCTCGTCTTGAATTCTGAGTCTTGGGATTTTCAGATGGTTGTCTGGCAGTGACTTAAGAAAGGTTGCCCTCTTTGGATGCCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTTTTTAGAATCCAAGAAGACACAGTAAGAAAAACCTCAGTAAATATTACCTTATTCCTTCCCTTACCAACTAAATTTTTAGTAGAATTCTTTGGCTTATTTTCTTCCCCTTCCAATTATCTGCAGGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTATGTGAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTATTACTCAATACGCCTTGGAAGCTATACCAGAACAACTTATAATACCTGAAGATATAAAGGCTTCCGTAAGCCGATTGCTGAAAGAGATATTGAATCTAAGTCAGACTGTGTCGAGGAACTAGTTTTCATTGCAACAATACAAGTTCTCCTTCAGCAGAAGCAAAAATCCTTCAGTCCTCAGGAAAATCTGTGTTGCTCTCCCTTGTGCTGTTGAATCGATTCATCCAACTTTGCAAGGGGAGTTTGTGAGCAGTGAAGTTAAGTTAATGCTGTTTTTTGATTGGTAATTAACATGATTTTGAGTGCCTCATCTTGTTGACATGGATAACAACTGGTTATAGAACCTGACAATTCAGGTTCAATTATTATATGCCTAAAGAGGTATCTAGTGGTTATTAAGAATTATACAAACTTTTCACATTCATTATGATATTGTACTTTGTGTTAGATGACCATCATTTTTAAGAAAGATCTAATAGAGGATGGAGATATG

mRNA sequence

AAAACCCTCGTCTTCACAAACTTCTACCCGTCTATGTCTCGCTTCAGACCTCTTTACTCTCAAATCCTACTCTTCAATTCACAATCCACTATTTCCCTTCAATTTCACCTTCTTCCTTCTACTTCTCGATCTTTCTCGCTGAAAATCGGGGAGGGGATTGAACCAGAAATTGTCCCCGCTAAGACGAATACACCGCCGGCGTTTCTGTCTAGGGAAGCCGCGAATTCGAACGGAAGTGTAAAATCTCTAGAAGGAAAAGGTGGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCGGAAGGAAACAAGAAATTAGCGAGGGAGGATGCTTTGCTCCGCAAAGAGCTCTCTCCGGATATGGAGATGTTTGCGAGACATTTGTACAGGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGTTAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCGTGGACGGAATTTTATCAAGTCTACAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAATGGTTGTCTGGCAGTGACTTAAGAAAGGTTGCCCTCTTTGGATGCCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTTTTTAGAATCCAAGAAGACACAGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTATGTGAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTATTACTCAATACGCCTTGGAAGCTATACCAGAACAACTTATAATACCTGAAGATATAAAGGCTTCCGTAAGCCGATTGCTGAAAGAGATATTGAATCTAAGTCAGACTGTGTCGAGGAACTAGTTTTCATTGCAACAATACAAGTTCTCCTTCAGCAGAAGCAAAAATCCTTCAGTCCTCAGGAAAATCTGTGTTGCTCTCCCTTGTGCTGTTGAATCGATTCATCCAACTTTGCAAGGGGAGTTTGTGAGCAGTGAAGTTAAGTTAATGCTGTTTTTTGATTGGTAATTAACATGATTTTGAGTGCCTCATCTTGTTGACATGGATAACAACTGGTTATAGAACCTGACAATTCAGGTTCAATTATTATATGCCTAAAGAGGTATCTAGTGGTTATTAAGAATTATACAAACTTTTCACATTCATTATGATATTGTACTTTGTGTTAGATGACCATCATTTTTAAGAAAGATCTAATAGAGGATGGAGATATG

Coding sequence (CDS)

ATGTCTCGCTTCAGACCTCTTTACTCTCAAATCCTACTCTTCAATTCACAATCCACTATTTCCCTTCAATTTCACCTTCTTCCTTCTACTTCTCGATCTTTCTCGCTGAAAATCGGGGAGGGGATTGAACCAGAAATTGTCCCCGCTAAGACGAATACACCGCCGGCGTTTCTGTCTAGGGAAGCCGCGAATTCGAACGGAAGTGTAAAATCTCTAGAAGGAAAAGGTGGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCGGAAGGAAACAAGAAATTAGCGAGGGAGGATGCTTTGCTCCGCAAAGAGCTCTCTCCGGATATGGAGATGTTTGCGAGACATTTGTACAGGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGTTAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCGTGGACGGAATTTTATCAAGTCTACAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAATGGTTGTCTGGCAGTGACTTAAGAAAGGTTGCCCTCTTTGGATGCCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTTTTTAGAATCCAAGAAGACACAGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTATGTGAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTATTACTCAATACGCCTTGGAAGCTATACCAGAACAACTTATAATACCTGAAGATATAAAGGCTTCCGTAAGCCGATTGCTGAAAGAGATATTGAATCTAAGTCAGACTGTGTCGAGGAACTAG

Protein sequence

MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSREAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN

Homology

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BLAST of MELO3C025659.2 vs. NCBI nr
Match: XP_004146085.1 (PREDICTED: uncharacterized protein LOC101222492 [Cucumis sativus] >KGN55046.1 hypothetical protein Csa_4G625010 [Cucumis sativus])

HSP 1 Score: 493.8 bits (1270), Expect = 3.8e-136
Identity = 252/277 (90.97%), Postives = 258/277 (93.14%), Query Frame = 0


Query: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60
           MSRFRPL+SQI LFNSQSTISLQFHLLPSTSRSFSL IGE I PEIVP   NTPP FL R
Sbjct: 1   MSRFRPLHSQIQLFNSQSTISLQFHLLPSTSRSFSLNIGERIAPEIVPGNRNTPPPFLCR 60

Query: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120
           EAANS+GSVKS EGKG NEETVLKGKVGSEGNKKL REDALLRK+LSPDMEMF RHLY+E
Sbjct: 61  EAANSDGSVKSQEGKGRNEETVLKGKVGSEGNKKLTREDALLRKQLSPDMEMFVRHLYQE 120

Query: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCP 180
           GYFNYANFLP NKFVLSYFECR GR+FIKS AQRFGRDNQEIAKWLSGSDLRKVA FGCP
Sbjct: 121 GYFNYANFLPDNKFVLSYFECRHGRDFIKSAAQRFGRDNQEIAKWLSGSDLRKVAFFGCP 180

Query: 181 STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVITQ 240
           STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQV TQ
Sbjct: 181 STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVTTQ 240

Query: 241 YALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 278
           YALEAIPEQLIIPED+KASVSRLLKEILNLS TVSRN
Sbjct: 241 YALEAIPEQLIIPEDVKASVSRLLKEILNLSPTVSRN 277

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BLAST of MELO3C025659.2 vs. NCBI nr
Match: XP_022935982.1 (uncharacterized protein LOC111442720 [Cucurbita moschata])

HSP 1 Score: 384.0 bits (985), Expect = 4.2e-103
Identity = 209/286 (73.08%), Postives = 227/286 (79.37%), Query Frame = 0


Query: 1   MSRFRPLYSQI------LLFNSQSTISLQFHLLPST---SRSFSLKIGEGIEPEIVPAKT 60
           MSRFR L+ +I        F+SQST SLQFH LPST   SR+FS KI  GI PEIV  K 
Sbjct: 1   MSRFRVLHRRIDSQLGSYFFSSQSTNSLQFHSLPSTSRRSRTFSPKIDGGIGPEIVDVKR 60

Query: 61  NTPPAFLSREAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDME 120
           N     +  + A S GS         NE+ VLKG+V S+G +KL REDAL+RKELSPDME
Sbjct: 61  NIRLDSVVNQGARSGGS--------RNEDNVLKGRVDSKGREKLTREDALVRKELSPDME 120

Query: 121 MFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDL 180
           MF RHLYREGYFNYANFLP NK VLSYFECR GR+FIKS A+RFGRDNQEIAKWLSGSDL
Sbjct: 121 MFVRHLYREGYFNYANFLPDNKLVLSYFECRHGRDFIKSAAERFGRDNQEIAKWLSGSDL 180

Query: 181 RKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNL 240
           RKVALFGCPSTAR+DVFAAKRLRKFF IQEDTVCH C LRQSCKYVNQGVWN  TKNLNL
Sbjct: 181 RKVALFGCPSTARRDVFAAKRLRKFFSIQEDTVCHNCTLRQSCKYVNQGVWNCGTKNLNL 240

Query: 241 GVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 278
            VV+QVITQY L+AIP+QLIIPEDIKASVSRLLKEIL LS TVSR+
Sbjct: 241 AVVMQVITQYDLQAIPKQLIIPEDIKASVSRLLKEILKLSPTVSRD 278

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BLAST of MELO3C025659.2 vs. NCBI nr
Match: XP_022976827.1 (uncharacterized protein LOC111477088 [Cucurbita maxima])

HSP 1 Score: 378.6 bits (971), Expect = 1.8e-101
Identity = 206/286 (72.03%), Postives = 226/286 (79.02%), Query Frame = 0


Query: 1   MSRFRPLYSQI------LLFNSQSTISLQFHLLPST---SRSFSLKIGEGIEPEIVPAKT 60
           MSRFR L+ +I        F+SQST SLQFH LPST   SR+FS KI  GI PEIV  K 
Sbjct: 1   MSRFRVLHRRIDSQLGSYFFSSQSTNSLQFHSLPSTSRRSRTFSPKIDGGIGPEIVDVKR 60

Query: 61  NTPPAFLSREAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDME 120
           N     +  + A S GS         NE+ VLKG+V S+G + L RE+AL+RKELSPDME
Sbjct: 61  NIRSDSVVNQGARSGGS--------RNEDNVLKGRVDSKGREILKRENALVRKELSPDME 120

Query: 121 MFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDL 180
           MF RHLYREGYFNY+NFLP NK VLSYFECR GR+FIKS A+RF RDNQEIAKWLSGSDL
Sbjct: 121 MFVRHLYREGYFNYSNFLPDNKLVLSYFECRHGRDFIKSAAERFSRDNQEIAKWLSGSDL 180

Query: 181 RKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNL 240
           RKVALFGCPSTAR+DVFAAKRLRKFFRIQEDTVCH C LRQSCKYVNQGVWN  TKNLNL
Sbjct: 181 RKVALFGCPSTARRDVFAAKRLRKFFRIQEDTVCHNCTLRQSCKYVNQGVWNCGTKNLNL 240

Query: 241 GVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 278
            VV++VITQY L+AIP+QLIIPEDIKASVSRLLKEIL LS TVSRN
Sbjct: 241 AVVMKVITQYDLQAIPKQLIIPEDIKASVSRLLKEILKLSPTVSRN 278

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BLAST of MELO3C025659.2 vs. NCBI nr
Match: XP_023536478.1 (uncharacterized protein LOC111797643 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.1 bits (967), Expect = 5.2e-101
Identity = 205/286 (71.68%), Postives = 225/286 (78.67%), Query Frame = 0


Query: 1   MSRFRPLYSQI------LLFNSQSTISLQFHLLPST---SRSFSLKIGEGIEPEIVPAKT 60
           MSRFR L+ +I        F+SQST SLQFH L ST   SR+F  +I  GI PEIV  K 
Sbjct: 1   MSRFRVLHRRIDSQLGSYFFSSQSTNSLQFHSLSSTSRRSRTFLPEIDGGIGPEIVDVKR 60

Query: 61  NTPPAFLSREAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDME 120
           N     +  + A S GS         NE+ VLKG+V S+G +KL REDAL+RKELSPDME
Sbjct: 61  NIRSDSVVNQGARSGGS--------RNEDNVLKGRVDSKGREKLTREDALVRKELSPDME 120

Query: 121 MFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDL 180
           MF R+LYREGYFNYANFLP NK VLSYFECR GR+FIKS A+RFGRDNQEIAKWLSGSDL
Sbjct: 121 MFVRYLYREGYFNYANFLPDNKLVLSYFECRHGRDFIKSAAERFGRDNQEIAKWLSGSDL 180

Query: 181 RKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNL 240
           RKVALFGCPSTAR+DVFAAKRLRKFF IQEDTVCH C LRQSCKYVNQGVWN  TKNLNL
Sbjct: 181 RKVALFGCPSTARRDVFAAKRLRKFFSIQEDTVCHNCTLRQSCKYVNQGVWNCGTKNLNL 240

Query: 241 GVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 278
            VV+QVITQY L+AIP+QLI+PEDIKASVSRLLKEIL LS TVSRN
Sbjct: 241 AVVMQVITQYDLQAIPKQLIVPEDIKASVSRLLKEILKLSPTVSRN 278

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BLAST of MELO3C025659.2 vs. NCBI nr
Match: XP_008463764.1 (PREDICTED: uncharacterized protein LOC103501830 [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 7.5e-84
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60
           MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR
Sbjct: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60

Query: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120
           EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE
Sbjct: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120

Query: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLS 168
           GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIA  +S
Sbjct: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIANCVS 167

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BLAST of MELO3C025659.2 vs. TAIR10
Match: AT1G53460.1 (BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2))

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-46
Identity = 96/202 (47.52%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 75  KGGNEETVLKGKVGSEGNKKLAREDALLR--KELSPDMEMFARHLYREGYFNYANFLPVN 134
           K  N   + KG    E  K    ++ ++R  KEL  +M  F R L++EGY N ANF+   
Sbjct: 108 KRHNLYKLFKGDEEKEVKKHSKEKEDVIRVYKELPIEMVSFVRLLHKEGYLNKANFITGE 167

Query: 135 KFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKR 194
           K  +   +    R F+K  A+RFG+D QEIAKWLSGSDL+K+ LFGCPS  ++ VFAAK 
Sbjct: 168 KLDMGNLDEEYARTFVKFAAERFGKDYQEIAKWLSGSDLKKIVLFGCPSLEKRAVFAAKT 227

Query: 195 LRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVITQYALEAIPEQLII 254
           LR FF I E+ VC KC+L++ CK+ NQ VW+  TK+L+L VV++VIT Y L+    +L +
Sbjct: 228 LRNFFDIHENNVCEKCVLKEKCKFPNQSVWDGKTKHLHLSVVMKVITLYPLDLTHPKLQV 287

Query: 255 PEDIKASVSRLLKEILNLSQTV 275
           P++++ SVSRLL EI NLS+T+
Sbjct: 288 PQEVQDSVSRLLTEIQNLSRTI 309

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BLAST of MELO3C025659.2 vs. TAIR10
Match: AT1G55040.1 (zinc finger (Ran-binding) family protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-10
Identity = 40/130 (30.77%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 148 IKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHK 207
           +++    FG+D  +I + LS +D++ +   GCP+T RK VF+ K LRK   + E  VC  
Sbjct: 206 VQNACSNFGKDRFDILRSLSRNDIQILVGHGCPATDRKVVFSGKLLRKRVHLDEGDVCSS 265

Query: 208 CILRQSCKYVNQGVWNED-TKNLNLGVVLQVITQYALEAI-----PEQLIIPEDIKASVS 267
           C LR SC+        ED  + ++L   ++++  Y  + +      + L+  + +K+ V 
Sbjct: 266 CSLRNSCEKAFLLTNKEDEARTIDL---MRILFTYGFDPLNGTVANKSLLKKKSVKSVVR 325

Query: 268 RLLKEILNLS 272
           +LL EI+ LS
Sbjct: 326 KLLHEIVKLS 332

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BLAST of MELO3C025659.2 vs. TAIR10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-08
Identity = 41/133 (30.83%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 146 NFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVC 205
           N I++    F R    + + LS  D++ +A  GCPST RK V + KRLR +  I E  VC
Sbjct: 76  NHIRTACLNFARHRFTLVRNLSKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVC 135

Query: 206 HKCILRQSC-KYVNQGVWNEDTKNLNLGVVLQVITQYALEAI----PEQLIIPEDIKASV 265
             C LR  C +   Q   +E  + ++   V++++  Y L++I      +    + ++ SV
Sbjct: 136 GSCNLRGKCERAYAQARDDEGARTID---VMRLLLTYGLDSISPTVENRACQTKLVEDSV 195

Query: 266 SRLLKEILNLSQT 274
            +LL+E +  S T
Sbjct: 196 RKLLRESVAYSLT 205

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BLAST of MELO3C025659.2 vs. TAIR10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein)

HSP 1 Score: 55.1 bits (131), Expect = 8.1e-08
Identity = 39/131 (29.77%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 148 IKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHK 207
           +K     F RD  ++ + LS  D++ +   GCP+  RK V ++KR+R   ++ E  VC  
Sbjct: 94  VKDACLSFARDRYDVLRSLSSGDVQALVERGCPNLFRKTVNSSKRIRAHVKLNEGDVCGS 153

Query: 208 CILRQSC--KYVNQGVWNEDTKNLNLGVVLQVITQYALEAIP-EQLIIP---EDIKASVS 267
           C LR SC   YV       D + ++   V++++   AL++I   +  +P   E +  S  
Sbjct: 154 CDLRSSCDRAYVILKDTEADARTVD---VMRLLLFNALDSIVISRGEVPPGKELVHESAR 213

Query: 268 RLLKEILNLSQ 273
           RLL E++  S+
Sbjct: 214 RLLLELVEFSE 221

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BLAST of MELO3C025659.2 vs. TrEMBL
Match: tr|A0A0A0L4J9|A0A0A0L4J9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625010 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 2.5e-136
Identity = 252/277 (90.97%), Postives = 258/277 (93.14%), Query Frame = 0


Query: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60
           MSRFRPL+SQI LFNSQSTISLQFHLLPSTSRSFSL IGE I PEIVP   NTPP FL R
Sbjct: 1   MSRFRPLHSQIQLFNSQSTISLQFHLLPSTSRSFSLNIGERIAPEIVPGNRNTPPPFLCR 60

Query: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120
           EAANS+GSVKS EGKG NEETVLKGKVGSEGNKKL REDALLRK+LSPDMEMF RHLY+E
Sbjct: 61  EAANSDGSVKSQEGKGRNEETVLKGKVGSEGNKKLTREDALLRKQLSPDMEMFVRHLYQE 120

Query: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCP 180
           GYFNYANFLP NKFVLSYFECR GR+FIKS AQRFGRDNQEIAKWLSGSDLRKVA FGCP
Sbjct: 121 GYFNYANFLPDNKFVLSYFECRHGRDFIKSAAQRFGRDNQEIAKWLSGSDLRKVAFFGCP 180

Query: 181 STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVITQ 240
           STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQV TQ
Sbjct: 181 STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVTTQ 240

Query: 241 YALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 278
           YALEAIPEQLIIPED+KASVSRLLKEILNLS TVSRN
Sbjct: 241 YALEAIPEQLIIPEDVKASVSRLLKEILNLSPTVSRN 277

[Close]

BLAST of MELO3C025659.2 vs. TrEMBL
Match: tr|A0A1S3CK23|A0A1S3CK23_CUCME (uncharacterized protein LOC103501830 OS=Cucumis melo OX=3656 GN=LOC103501830 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 4.9e-84
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60
           MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR
Sbjct: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60

Query: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120
           EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE
Sbjct: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120

Query: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLS 168
           GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIA  +S
Sbjct: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIANCVS 167

[Close]

BLAST of MELO3C025659.2 vs. TrEMBL
Match: tr|A0A2I4GYC6|A0A2I4GYC6_9ROSI (uncharacterized protein LOC109011933 OS=Juglans regia OX=51240 GN=LOC109011933 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.7e-64
Identity = 121/178 (67.98%), Postives = 145/178 (81.46%), Query Frame = 0


Query: 98  EDALLRKELSPDMEMFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGR 157
           E+  + KELSPDME+F  HLY+EGYFN ANF+  NK     FE R GR F+K  A++FG+
Sbjct: 162 EEPEVYKELSPDMEVFVNHLYKEGYFNNANFMRGNKLEFGCFESRYGRGFLKFAAEKFGK 221

Query: 158 DNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYV 217
           DNQEIAKWLSGSDL+KVALFGCPS ARK++FAAKRLRK F IQE+TVC KCIL+QSCK+ 
Sbjct: 222 DNQEIAKWLSGSDLKKVALFGCPSLARKNIFAAKRLRKVFEIQENTVCTKCILKQSCKFA 281

Query: 218 NQGVWNEDTKNLNLGVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVS 276
           NQ VW  DTKNLNL VV++VIT YALEA+P +L +P +IKASVS+LLKE+L LSQ+ S
Sbjct: 282 NQSVWKGDTKNLNLAVVMRVITLYALEAVPPELAVPNEIKASVSKLLKEVLKLSQSTS 339

[Close]

BLAST of MELO3C025659.2 vs. TrEMBL
Match: tr|A0A1S4CPA8|A0A1S4CPA8_TOBAC (uncharacterized protein LOC107821009 OS=Nicotiana tabacum OX=4097 GN=LOC107821009 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.9e-59
Identity = 115/172 (66.86%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 104 KELSPDMEMFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIA 163
           KELSPDM MF  HLY EGYF  +NFLP  +F ++ FE    R+F+K  A++FGRD+QEIA
Sbjct: 225 KELSPDMVMFVTHLYNEGYFKDSNFLPRKRFDITCFENSYARDFVKYAAEQFGRDHQEIA 284

Query: 164 KWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWN 223
           KWLSGSDL+KVALFGCPS A+K VF+AKRLR +FRIQED VC KC L+ SCK+VNQ VW 
Sbjct: 285 KWLSGSDLKKVALFGCPSIAKKTVFSAKRLRTYFRIQEDNVCSKCALKASCKFVNQSVWK 344

Query: 224 EDTKNLNLGVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVS 276
            D  NL+L VV++VIT YALE++P QL+IP++IKASVSRLLK+I+ LSQTVS
Sbjct: 345 GDMTNLHLAVVMRVITLYALESVPPQLVIPDEIKASVSRLLKDIVRLSQTVS 396

[Close]

BLAST of MELO3C025659.2 vs. TrEMBL
Match: tr|A0A1S4DCV3|A0A1S4DCV3_TOBAC (uncharacterized protein LOC107828468 OS=Nicotiana tabacum OX=4097 GN=LOC107828468 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.5e-59
Identity = 114/172 (66.28%), Postives = 139/172 (80.81%), Query Frame = 0


Query: 104 KELSPDMEMFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIA 163
           KELSPDM MF  HLY EGYF  +NFLP  +F ++ FE    R+F+K  A++FGRD+QEIA
Sbjct: 221 KELSPDMVMFVTHLYNEGYFKDSNFLPRKRFDITCFESSYARDFVKYAAEQFGRDHQEIA 280

Query: 164 KWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWN 223
           KWLSGSDL+ VALFGCPS A+K VF+AKRLR +FRIQED VC KC L+ SCK+VNQ VW 
Sbjct: 281 KWLSGSDLKNVALFGCPSVAKKTVFSAKRLRTYFRIQEDNVCRKCALKASCKFVNQSVWK 340

Query: 224 EDTKNLNLGVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVS 276
            D  NL+L VV++VIT YALE++P QL+IP++IKASVSRLLK+I+ LSQTVS
Sbjct: 341 GDMTNLHLAVVMRVITLYALESVPPQLVIPDEIKASVSRLLKDIVRLSQTVS 392

The following BLAST results are available for this feature:

BLAST of MELO3C025659.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146085.1	3.8e-136	90.97	PREDICTED: uncharacterized protein LOC101222492 [Cucumis sativus] >KGN55046.1 hy...	[more]
XP_022935982.1	4.2e-103	73.08	uncharacterized protein LOC111442720 [Cucurbita moschata]	[more]
XP_022976827.1	1.8e-101	72.03	uncharacterized protein LOC111477088 [Cucurbita maxima]	[more]
XP_023536478.1	5.2e-101	71.68	uncharacterized protein LOC111797643 [Cucurbita pepo subsp. pepo]	[more]
XP_008463764.1	7.5e-84	98.20	PREDICTED: uncharacterized protein LOC103501830 [Cucumis melo]	[more]

BLAST of MELO3C025659.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53460.1	1.2e-46	47.52	BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfa...	[more]
AT1G55040.1	1.0e-10	30.77	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	1.3e-08	30.83	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G48570.1	8.1e-08	29.77	zinc finger (Ran-binding) family protein	[more]

BLAST of MELO3C025659.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C025659.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4J9\|A0A0A0L4J9_CUCSA	2.5e-136	90.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625010 PE=4 SV=1	[more]
tr\|A0A1S3CK23\|A0A1S3CK23_CUCME	4.9e-84	98.20	uncharacterized protein LOC103501830 OS=Cucumis melo OX=3656 GN=LOC103501830 PE=...	[more]
tr\|A0A2I4GYC6\|A0A2I4GYC6_9ROSI	9.7e-64	67.98	uncharacterized protein LOC109011933 OS=Juglans regia OX=51240 GN=LOC109011933 P...	[more]
tr\|A0A1S4CPA8\|A0A1S4CPA8_TOBAC	1.9e-59	66.86	uncharacterized protein LOC107821009 OS=Nicotiana tabacum OX=4097 GN=LOC10782100...	[more]
tr\|A0A1S4DCV3\|A0A1S4DCV3_TOBAC	2.5e-59	66.28	uncharacterized protein LOC107828468 OS=Nicotiana tabacum OX=4097 GN=LOC10782846...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025659.2.1	MELO3C025659.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 100..275
None	No IPR available	PANTHER	PTHR23111:SF24	SUBFAMILY NOT NAMED	coord: 100..275

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025659.2	Csa4G625010	Cucumber (Chinese Long) v2	cumedB283
MELO3C025659.2	CSPI04G22680	Wild cucumber (PI 183967)	cpimedB287
MELO3C025659.2	Cucsa.057840	Cucumber (Gy14) v1	cgymedB042
MELO3C025659.2	CmaCh09G006700	Cucurbita maxima (Rimu)	cmamedB044
MELO3C025659.2	CmoCh09G006530	Cucurbita moschata (Rifu)	cmomedB034
MELO3C025659.2	Lsi04G019930	Bottle gourd (USVL1VR-Ls)	lsimedB331
MELO3C025659.2	Cp4.1LG06g05210	Cucurbita pepo (Zucchini)	cpemedB870
MELO3C025659.2	CsGy4G021140	Cucumber (Gy14) v2	cgybmedB252
MELO3C025659.2	Cla023315	Watermelon (97103) v1	medwmB524
MELO3C025659.2	ClCG11G017270	Watermelon (Charleston Gray)	medwcgB450
MELO3C025659.2	Cla97C11G223380	Watermelon (97103) v2	medwmbB460
MELO3C025659.2	Bhi09G002889	Wax gourd	medwgoB609
MELO3C025659.2	Carg03077	Silver-seed gourd	carmedB0644
MELO3C025659.2	CsaV3_4G032920	Cucumber (Chinese Long) v3	cucmedB291

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025659.2	Cucurbita maxima (Rimu)	cmamedB509
MELO3C025659.2	Cucurbita moschata (Rifu)	cmomedB497
MELO3C025659.2	Cucurbita pepo (Zucchini)	cpemedB631
MELO3C025659.2	Silver-seed gourd	carmedB0326