MELO3C025659.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025659.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	zinc finger protein VAR3, chloroplastic
Location	chr07 : 4543582 .. 4546022 (-)
Sequence length	1238

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCCTCGTCTTCACAAACTTCTACCCGTCTATGTCTCGCTTCAGACCTCTTTACTCTCAAATCCTACTCTTCAATTCACAATCCACTATTTCCCTTCAATTTCACCTTCTTCCTTCTACTTCTCGATCTTTCTCGCTGAAAATCGGGGAGGGGATTGAACCAGAAATTGTCCCCGCTAAGACGAATACACCGCCGGCGTTTCTGTCTAGGGAAGCCGCGAATTCGAACGGAAGTGTAAAATCTCTAGAAGGAAAAGGTGGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCGGAAGGAAACAAGAAATTAGCGAGGGAGGATGCTTTGCTCCGCAAAGAGCTCTCTCCGGATATGGAGATGTTTGCGAGACATTTGTACAGGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGTTAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCGTGGACGGAATTTTATCAAGTCTACAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAGTAAGAAGAGTTTTGATTTTTGCTTTTTCAATGTGGTATCTCTGTTGTGTTTTCGTTTTTGTGTAATGTTTTGAGAATTGGTGTGAGATCATCATATATCTGATGAAGTGGATAGCTTTAATCTTTTGCTAATGACAATTTCATTTATAGAGTATGAAGTGCTGTGAAATTTGGATATATTGTGTGTGGAAGAATGAAACAAGGAAAAATTTTGTTTTTCTTTTGAATCAGTTTCATGATTTGGCTTGTGTATTGACATTGGGAAACTATACTTAATTCTAGTTTGAGGTTTTTCAAAACATACTCTGTGCATCTTGCGGTGGTAATTAAGACAGAGAAGAAATTGAGGTCATTTCATATTGGGGGTTGATTACTCTAACTAACTACATTTAGTATCCTAAATGTAAAAATGATAGTTTGAATCATTTTTAGATGCATTCATTTTTTGGATAGGAGTTTCTTTTTCGAAGCATTAGTTTCATATTACGAGTATGAAAGCTATGAAAATATATTTCTTCTTCACTTTTGAAAGGACTATGGTCAAACTTGGAAGTTTGATTTTCCATAACTCAAATATTAGAATATCTGCTGCTATTATTGTTCCCTAACAAGTTGTTTTTGCTTTGTTCGATTGGTTCATCTTTCAAAAGTTACTGTACAAGTCGGTTCTATGTTGATATTCAACTTAGTGAGCAATTTTAATGGTTCGATCTCCCACCCCTATCATTGTTGAACTAAAAATGATACCCATTTACCAACCCATATTGTTTAATTAGTTTTGGCATCAGTAACCTTGACTAAATAGTTATCCATCTAAGACATAACTGACCTAAACCGACCTATCTTGGTTTTTCTTTCCTAGCTAATCTCTCTGCTTGATAATTGCTTGAATCCTTATGGTTCAAGACATTAATGTGTCAGATTATTAAGTGTAGCGTACATAAAAGTGTAATATTCCTAATAAGTTACAAAATCTAACAATCTGATTTCAAAGGAAATAATTTTTTGTATTTCATCTTTCTGGTTATGGCAGTTGTGTTTCTTTATGAAGACATCCCCCAATTGTTTCTCGTCTTGAATTCTGAGTCTTGGGATTTTCAGATGGTTGTCTGGCAGTGACTTAAGAAAGGTTGCCCTCTTTGGATGCCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTTTTTAGAATCCAAGAAGACACAGTAAGAAAAACCTCAGTAAATATTACCTTATTCCTTCCCTTACCAACTAAATTTTTAGTAGAATTCTTTGGCTTATTTTCTTCCCCTTCCAATTATCTGCAGGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTATGTGAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTATTACTCAATACGCCTTGGAAGCTATACCAGAACAACTTATAATACCTGAAGATATAAAGGCTTCCGTAAGCCGATTGCTGAAAGAGATATTGAATCTAAGTCAGACTGTGTCGAGGAACTAGTTTTCATTGCAACAATACAAGTTCTCCTTCAGCAGAAGCAAAAATCCTTCAGTCCTCAGGAAAATCTGTGTTGCTCTCCCTTGTGCTGTTGAATCGATTCATCCAACTTTGCAAGGGGAGTTTGTGAGCAGTGAAGTTAAGTTAATGCTGTTTTTTGATTGGTAATTAACATGATTTTGAGTGCCTCATCTTGTTGACATGGATAACAACTGGTTATAGAACCTGACAATTCAGGTTCAATTATTATATGCCTAAAGAGGTATCTAGTGGTTATTAAGAATTATACAAACTTTTCACATTCATTATGATATTGTACTTTGTGTTAGATGACCATCATTTTTAAGAAAGATCTAATAGAGGATGGAGATATG

mRNA sequence

AAAACCCTCGTCTTCACAAACTTCTACCCGTCTATGTCTCGCTTCAGACCTCTTTACTCTCAAATCCTACTCTTCAATTCACAATCCACTATTTCCCTTCAATTTCACCTTCTTCCTTCTACTTCTCGATCTTTCTCGCTGAAAATCGGGGAGGGGATTGAACCAGAAATTGTCCCCGCTAAGACGAATACACCGCCGGCGTTTCTGTCTAGGGAAGCCGCGAATTCGAACGGAAGTGTAAAATCTCTAGAAGGAAAAGGTGGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCGGAAGGAAACAAGAAATTAGCGAGGGAGGATGCTTTGCTCCGCAAAGAGCTCTCTCCGGATATGGAGATGTTTGCGAGACATTTGTACAGGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGTTAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCGTGGACGGAATTTTATCAAGTCTACAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAATGGTTGTCTGGCAGTGACTTAAGAAAGGTTGCCCTCTTTGGATGCCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTTTTTAGAATCCAAGAAGACACAGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTATGTGAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTATTACTCAATACGCCTTGGAAGCTATACCAGAACAACTTATAATACCTGAAGATATAAAGGCTTCCGTAAGCCGATTGCTGAAAGAGATATTGAATCTAAGTCAGACTGTGTCGAGGAACTAGTTTTCATTGCAACAATACAAGTTCTCCTTCAGCAGAAGCAAAAATCCTTCAGTCCTCAGGAAAATCTGTGTTGCTCTCCCTTGTGCTGTTGAATCGATTCATCCAACTTTGCAAGGGGAGTTTGTGAGCAGTGAAGTTAAGTTAATGCTGTTTTTTGATTGGTAATTAACATGATTTTGAGTGCCTCATCTTGTTGACATGGATAACAACTGGTTATAGAACCTGACAATTCAGGTTCAATTATTATATGCCTAAAGAGGTATCTAGTGGTTATTAAGAATTATACAAACTTTTCACATTCATTATGATATTGTACTTTGTGTTAGATGACCATCATTTTTAAGAAAGATCTAATAGAGGATGGAGATATG

Coding sequence (CDS)

ATGTCTCGCTTCAGACCTCTTTACTCTCAAATCCTACTCTTCAATTCACAATCCACTATTTCCCTTCAATTTCACCTTCTTCCTTCTACTTCTCGATCTTTCTCGCTGAAAATCGGGGAGGGGATTGAACCAGAAATTGTCCCCGCTAAGACGAATACACCGCCGGCGTTTCTGTCTAGGGAAGCCGCGAATTCGAACGGAAGTGTAAAATCTCTAGAAGGAAAAGGTGGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCGGAAGGAAACAAGAAATTAGCGAGGGAGGATGCTTTGCTCCGCAAAGAGCTCTCTCCGGATATGGAGATGTTTGCGAGACATTTGTACAGGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGTTAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCGTGGACGGAATTTTATCAAGTCTACAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAATGGTTGTCTGGCAGTGACTTAAGAAAGGTTGCCCTCTTTGGATGCCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTTTTTAGAATCCAAGAAGACACAGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTATGTGAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTATTACTCAATACGCCTTGGAAGCTATACCAGAACAACTTATAATACCTGAAGATATAAAGGCTTCCGTAAGCCGATTGCTGAAAGAGATATTGAATCTAAGTCAGACTGTGTCGAGGAACTAG

Protein sequence

MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSREAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN

Homology

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BLAST of MELO3C025659.2.1 vs. NCBI nr
Match: XP_004146085.1 (PREDICTED: uncharacterized protein LOC101222492 [Cucumis sativus] >KGN55046.1 hypothetical protein Csa_4G625010 [Cucumis sativus])

HSP 1 Score: 493.8 bits (1270), Expect = 3.8e-136
Identity = 252/277 (90.97%), Postives = 258/277 (93.14%), Query Frame = 0


Query: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60
           MSRFRPL+SQI LFNSQSTISLQFHLLPSTSRSFSL IGE I PEIVP   NTPP FL R
Sbjct: 1   MSRFRPLHSQIQLFNSQSTISLQFHLLPSTSRSFSLNIGERIAPEIVPGNRNTPPPFLCR 60

Query: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120
           EAANS+GSVKS EGKG NEETVLKGKVGSEGNKKL REDALLRK+LSPDMEMF RHLY+E
Sbjct: 61  EAANSDGSVKSQEGKGRNEETVLKGKVGSEGNKKLTREDALLRKQLSPDMEMFVRHLYQE 120

Query: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCP 180
           GYFNYANFLP NKFVLSYFECR GR+FIKS AQRFGRDNQEIAKWLSGSDLRKVA FGCP
Sbjct: 121 GYFNYANFLPDNKFVLSYFECRHGRDFIKSAAQRFGRDNQEIAKWLSGSDLRKVAFFGCP 180

Query: 181 STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVITQ 240
           STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQV TQ
Sbjct: 181 STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVTTQ 240

Query: 241 YALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 278
           YALEAIPEQLIIPED+KASVSRLLKEILNLS TVSRN
Sbjct: 241 YALEAIPEQLIIPEDVKASVSRLLKEILNLSPTVSRN 277

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BLAST of MELO3C025659.2.1 vs. NCBI nr
Match: XP_022935982.1 (uncharacterized protein LOC111442720 [Cucurbita moschata])

HSP 1 Score: 384.0 bits (985), Expect = 4.2e-103
Identity = 209/286 (73.08%), Postives = 227/286 (79.37%), Query Frame = 0


Query: 1   MSRFRPLYSQI------LLFNSQSTISLQFHLLPST---SRSFSLKIGEGIEPEIVPAKT 60
           MSRFR L+ +I        F+SQST SLQFH LPST   SR+FS KI  GI PEIV  K 
Sbjct: 1   MSRFRVLHRRIDSQLGSYFFSSQSTNSLQFHSLPSTSRRSRTFSPKIDGGIGPEIVDVKR 60

Query: 61  NTPPAFLSREAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDME 120
           N     +  + A S GS         NE+ VLKG+V S+G +KL REDAL+RKELSPDME
Sbjct: 61  NIRLDSVVNQGARSGGS--------RNEDNVLKGRVDSKGREKLTREDALVRKELSPDME 120

Query: 121 MFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDL 180
           MF RHLYREGYFNYANFLP NK VLSYFECR GR+FIKS A+RFGRDNQEIAKWLSGSDL
Sbjct: 121 MFVRHLYREGYFNYANFLPDNKLVLSYFECRHGRDFIKSAAERFGRDNQEIAKWLSGSDL 180

Query: 181 RKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNL 240
           RKVALFGCPSTAR+DVFAAKRLRKFF IQEDTVCH C LRQSCKYVNQGVWN  TKNLNL
Sbjct: 181 RKVALFGCPSTARRDVFAAKRLRKFFSIQEDTVCHNCTLRQSCKYVNQGVWNCGTKNLNL 240

Query: 241 GVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 278
            VV+QVITQY L+AIP+QLIIPEDIKASVSRLLKEIL LS TVSR+
Sbjct: 241 AVVMQVITQYDLQAIPKQLIIPEDIKASVSRLLKEILKLSPTVSRD 278

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BLAST of MELO3C025659.2.1 vs. NCBI nr
Match: XP_022976827.1 (uncharacterized protein LOC111477088 [Cucurbita maxima])

HSP 1 Score: 378.6 bits (971), Expect = 1.8e-101
Identity = 206/286 (72.03%), Postives = 226/286 (79.02%), Query Frame = 0


Query: 1   MSRFRPLYSQI------LLFNSQSTISLQFHLLPST---SRSFSLKIGEGIEPEIVPAKT 60
           MSRFR L+ +I        F+SQST SLQFH LPST   SR+FS KI  GI PEIV  K 
Sbjct: 1   MSRFRVLHRRIDSQLGSYFFSSQSTNSLQFHSLPSTSRRSRTFSPKIDGGIGPEIVDVKR 60

Query: 61  NTPPAFLSREAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDME 120
           N     +  + A S GS         NE+ VLKG+V S+G + L RE+AL+RKELSPDME
Sbjct: 61  NIRSDSVVNQGARSGGS--------RNEDNVLKGRVDSKGREILKRENALVRKELSPDME 120

Query: 121 MFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDL 180
           MF RHLYREGYFNY+NFLP NK VLSYFECR GR+FIKS A+RF RDNQEIAKWLSGSDL
Sbjct: 121 MFVRHLYREGYFNYSNFLPDNKLVLSYFECRHGRDFIKSAAERFSRDNQEIAKWLSGSDL 180

Query: 181 RKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNL 240
           RKVALFGCPSTAR+DVFAAKRLRKFFRIQEDTVCH C LRQSCKYVNQGVWN  TKNLNL
Sbjct: 181 RKVALFGCPSTARRDVFAAKRLRKFFRIQEDTVCHNCTLRQSCKYVNQGVWNCGTKNLNL 240

Query: 241 GVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 278
            VV++VITQY L+AIP+QLIIPEDIKASVSRLLKEIL LS TVSRN
Sbjct: 241 AVVMKVITQYDLQAIPKQLIIPEDIKASVSRLLKEILKLSPTVSRN 278

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BLAST of MELO3C025659.2.1 vs. NCBI nr
Match: XP_023536478.1 (uncharacterized protein LOC111797643 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.1 bits (967), Expect = 5.2e-101
Identity = 205/286 (71.68%), Postives = 225/286 (78.67%), Query Frame = 0


Query: 1   MSRFRPLYSQI------LLFNSQSTISLQFHLLPST---SRSFSLKIGEGIEPEIVPAKT 60
           MSRFR L+ +I        F+SQST SLQFH L ST   SR+F  +I  GI PEIV  K 
Sbjct: 1   MSRFRVLHRRIDSQLGSYFFSSQSTNSLQFHSLSSTSRRSRTFLPEIDGGIGPEIVDVKR 60

Query: 61  NTPPAFLSREAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDME 120
           N     +  + A S GS         NE+ VLKG+V S+G +KL REDAL+RKELSPDME
Sbjct: 61  NIRSDSVVNQGARSGGS--------RNEDNVLKGRVDSKGREKLTREDALVRKELSPDME 120

Query: 121 MFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDL 180
           MF R+LYREGYFNYANFLP NK VLSYFECR GR+FIKS A+RFGRDNQEIAKWLSGSDL
Sbjct: 121 MFVRYLYREGYFNYANFLPDNKLVLSYFECRHGRDFIKSAAERFGRDNQEIAKWLSGSDL 180

Query: 181 RKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNL 240
           RKVALFGCPSTAR+DVFAAKRLRKFF IQEDTVCH C LRQSCKYVNQGVWN  TKNLNL
Sbjct: 181 RKVALFGCPSTARRDVFAAKRLRKFFSIQEDTVCHNCTLRQSCKYVNQGVWNCGTKNLNL 240

Query: 241 GVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 278
            VV+QVITQY L+AIP+QLI+PEDIKASVSRLLKEIL LS TVSRN
Sbjct: 241 AVVMQVITQYDLQAIPKQLIVPEDIKASVSRLLKEILKLSPTVSRN 278

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BLAST of MELO3C025659.2.1 vs. NCBI nr
Match: XP_008463764.1 (PREDICTED: uncharacterized protein LOC103501830 [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 7.5e-84
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60
           MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR
Sbjct: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60

Query: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120
           EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE
Sbjct: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120

Query: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLS 168
           GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIA  +S
Sbjct: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIANCVS 167

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BLAST of MELO3C025659.2.1 vs. TAIR10
Match: AT1G53460.1 (BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2))

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-46
Identity = 96/202 (47.52%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 75  KGGNEETVLKGKVGSEGNKKLAREDALLR--KELSPDMEMFARHLYREGYFNYANFLPVN 134
           K  N   + KG    E  K    ++ ++R  KEL  +M  F R L++EGY N ANF+   
Sbjct: 108 KRHNLYKLFKGDEEKEVKKHSKEKEDVIRVYKELPIEMVSFVRLLHKEGYLNKANFITGE 167

Query: 135 KFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKR 194
           K  +   +    R F+K  A+RFG+D QEIAKWLSGSDL+K+ LFGCPS  ++ VFAAK 
Sbjct: 168 KLDMGNLDEEYARTFVKFAAERFGKDYQEIAKWLSGSDLKKIVLFGCPSLEKRAVFAAKT 227

Query: 195 LRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVITQYALEAIPEQLII 254
           LR FF I E+ VC KC+L++ CK+ NQ VW+  TK+L+L VV++VIT Y L+    +L +
Sbjct: 228 LRNFFDIHENNVCEKCVLKEKCKFPNQSVWDGKTKHLHLSVVMKVITLYPLDLTHPKLQV 287

Query: 255 PEDIKASVSRLLKEILNLSQTV 275
           P++++ SVSRLL EI NLS+T+
Sbjct: 288 PQEVQDSVSRLLTEIQNLSRTI 309

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BLAST of MELO3C025659.2.1 vs. TAIR10
Match: AT1G55040.1 (zinc finger (Ran-binding) family protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-10
Identity = 40/130 (30.77%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 148 IKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHK 207
           +++    FG+D  +I + LS +D++ +   GCP+T RK VF+ K LRK   + E  VC  
Sbjct: 206 VQNACSNFGKDRFDILRSLSRNDIQILVGHGCPATDRKVVFSGKLLRKRVHLDEGDVCSS 265

Query: 208 CILRQSCKYVNQGVWNED-TKNLNLGVVLQVITQYALEAI-----PEQLIIPEDIKASVS 267
           C LR SC+        ED  + ++L   ++++  Y  + +      + L+  + +K+ V 
Sbjct: 266 CSLRNSCEKAFLLTNKEDEARTIDL---MRILFTYGFDPLNGTVANKSLLKKKSVKSVVR 325

Query: 268 RLLKEILNLS 272
           +LL EI+ LS
Sbjct: 326 KLLHEIVKLS 332

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BLAST of MELO3C025659.2.1 vs. TAIR10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-08
Identity = 41/133 (30.83%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 146 NFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVC 205
           N I++    F R    + + LS  D++ +A  GCPST RK V + KRLR +  I E  VC
Sbjct: 76  NHIRTACLNFARHRFTLVRNLSKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVC 135

Query: 206 HKCILRQSC-KYVNQGVWNEDTKNLNLGVVLQVITQYALEAI----PEQLIIPEDIKASV 265
             C LR  C +   Q   +E  + ++   V++++  Y L++I      +    + ++ SV
Sbjct: 136 GSCNLRGKCERAYAQARDDEGARTID---VMRLLLTYGLDSISPTVENRACQTKLVEDSV 195

Query: 266 SRLLKEILNLSQT 274
            +LL+E +  S T
Sbjct: 196 RKLLRESVAYSLT 205

[Close]

BLAST of MELO3C025659.2.1 vs. TAIR10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein)

HSP 1 Score: 55.1 bits (131), Expect = 8.1e-08
Identity = 39/131 (29.77%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 148 IKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHK 207
           +K     F RD  ++ + LS  D++ +   GCP+  RK V ++KR+R   ++ E  VC  
Sbjct: 94  VKDACLSFARDRYDVLRSLSSGDVQALVERGCPNLFRKTVNSSKRIRAHVKLNEGDVCGS 153

Query: 208 CILRQSC--KYVNQGVWNEDTKNLNLGVVLQVITQYALEAIP-EQLIIP---EDIKASVS 267
           C LR SC   YV       D + ++   V++++   AL++I   +  +P   E +  S  
Sbjct: 154 CDLRSSCDRAYVILKDTEADARTVD---VMRLLLFNALDSIVISRGEVPPGKELVHESAR 213

Query: 268 RLLKEILNLSQ 273
           RLL E++  S+
Sbjct: 214 RLLLELVEFSE 221

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BLAST of MELO3C025659.2.1 vs. TrEMBL
Match: tr|A0A0A0L4J9|A0A0A0L4J9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625010 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 2.5e-136
Identity = 252/277 (90.97%), Postives = 258/277 (93.14%), Query Frame = 0


Query: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60
           MSRFRPL+SQI LFNSQSTISLQFHLLPSTSRSFSL IGE I PEIVP   NTPP FL R
Sbjct: 1   MSRFRPLHSQIQLFNSQSTISLQFHLLPSTSRSFSLNIGERIAPEIVPGNRNTPPPFLCR 60

Query: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120
           EAANS+GSVKS EGKG NEETVLKGKVGSEGNKKL REDALLRK+LSPDMEMF RHLY+E
Sbjct: 61  EAANSDGSVKSQEGKGRNEETVLKGKVGSEGNKKLTREDALLRKQLSPDMEMFVRHLYQE 120

Query: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCP 180
           GYFNYANFLP NKFVLSYFECR GR+FIKS AQRFGRDNQEIAKWLSGSDLRKVA FGCP
Sbjct: 121 GYFNYANFLPDNKFVLSYFECRHGRDFIKSAAQRFGRDNQEIAKWLSGSDLRKVAFFGCP 180

Query: 181 STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVITQ 240
           STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQV TQ
Sbjct: 181 STARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVTTQ 240

Query: 241 YALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 278
           YALEAIPEQLIIPED+KASVSRLLKEILNLS TVSRN
Sbjct: 241 YALEAIPEQLIIPEDVKASVSRLLKEILNLSPTVSRN 277

[Close]

BLAST of MELO3C025659.2.1 vs. TrEMBL
Match: tr|A0A1S3CK23|A0A1S3CK23_CUCME (uncharacterized protein LOC103501830 OS=Cucumis melo OX=3656 GN=LOC103501830 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 4.9e-84
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60
           MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR
Sbjct: 1   MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSR 60

Query: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120
           EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE
Sbjct: 61  EAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYRE 120

Query: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLS 168
           GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIA  +S
Sbjct: 121 GYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIANCVS 167

[Close]

BLAST of MELO3C025659.2.1 vs. TrEMBL
Match: tr|A0A2I4GYC6|A0A2I4GYC6_9ROSI (uncharacterized protein LOC109011933 OS=Juglans regia OX=51240 GN=LOC109011933 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.7e-64
Identity = 121/178 (67.98%), Postives = 145/178 (81.46%), Query Frame = 0


Query: 98  EDALLRKELSPDMEMFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGR 157
           E+  + KELSPDME+F  HLY+EGYFN ANF+  NK     FE R GR F+K  A++FG+
Sbjct: 162 EEPEVYKELSPDMEVFVNHLYKEGYFNNANFMRGNKLEFGCFESRYGRGFLKFAAEKFGK 221

Query: 158 DNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYV 217
           DNQEIAKWLSGSDL+KVALFGCPS ARK++FAAKRLRK F IQE+TVC KCIL+QSCK+ 
Sbjct: 222 DNQEIAKWLSGSDLKKVALFGCPSLARKNIFAAKRLRKVFEIQENTVCTKCILKQSCKFA 281

Query: 218 NQGVWNEDTKNLNLGVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVS 276
           NQ VW  DTKNLNL VV++VIT YALEA+P +L +P +IKASVS+LLKE+L LSQ+ S
Sbjct: 282 NQSVWKGDTKNLNLAVVMRVITLYALEAVPPELAVPNEIKASVSKLLKEVLKLSQSTS 339

[Close]

BLAST of MELO3C025659.2.1 vs. TrEMBL
Match: tr|A0A1S4CPA8|A0A1S4CPA8_TOBAC (uncharacterized protein LOC107821009 OS=Nicotiana tabacum OX=4097 GN=LOC107821009 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.9e-59
Identity = 115/172 (66.86%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 104 KELSPDMEMFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIA 163
           KELSPDM MF  HLY EGYF  +NFLP  +F ++ FE    R+F+K  A++FGRD+QEIA
Sbjct: 225 KELSPDMVMFVTHLYNEGYFKDSNFLPRKRFDITCFENSYARDFVKYAAEQFGRDHQEIA 284

Query: 164 KWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWN 223
           KWLSGSDL+KVALFGCPS A+K VF+AKRLR +FRIQED VC KC L+ SCK+VNQ VW 
Sbjct: 285 KWLSGSDLKKVALFGCPSIAKKTVFSAKRLRTYFRIQEDNVCSKCALKASCKFVNQSVWK 344

Query: 224 EDTKNLNLGVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVS 276
            D  NL+L VV++VIT YALE++P QL+IP++IKASVSRLLK+I+ LSQTVS
Sbjct: 345 GDMTNLHLAVVMRVITLYALESVPPQLVIPDEIKASVSRLLKDIVRLSQTVS 396

[Close]

BLAST of MELO3C025659.2.1 vs. TrEMBL
Match: tr|A0A1S4DCV3|A0A1S4DCV3_TOBAC (uncharacterized protein LOC107828468 OS=Nicotiana tabacum OX=4097 GN=LOC107828468 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.5e-59
Identity = 114/172 (66.28%), Postives = 139/172 (80.81%), Query Frame = 0


Query: 104 KELSPDMEMFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIA 163
           KELSPDM MF  HLY EGYF  +NFLP  +F ++ FE    R+F+K  A++FGRD+QEIA
Sbjct: 221 KELSPDMVMFVTHLYNEGYFKDSNFLPRKRFDITCFESSYARDFVKYAAEQFGRDHQEIA 280

Query: 164 KWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWN 223
           KWLSGSDL+ VALFGCPS A+K VF+AKRLR +FRIQED VC KC L+ SCK+VNQ VW 
Sbjct: 281 KWLSGSDLKNVALFGCPSVAKKTVFSAKRLRTYFRIQEDNVCRKCALKASCKFVNQSVWK 340

Query: 224 EDTKNLNLGVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVS 276
            D  NL+L VV++VIT YALE++P QL+IP++IKASVSRLLK+I+ LSQTVS
Sbjct: 341 GDMTNLHLAVVMRVITLYALESVPPQLVIPDEIKASVSRLLKDIVRLSQTVS 392

The following BLAST results are available for this feature:

BLAST of MELO3C025659.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146085.1	3.8e-136	90.97	PREDICTED: uncharacterized protein LOC101222492 [Cucumis sativus] >KGN55046.1 hy...	[more]
XP_022935982.1	4.2e-103	73.08	uncharacterized protein LOC111442720 [Cucurbita moschata]	[more]
XP_022976827.1	1.8e-101	72.03	uncharacterized protein LOC111477088 [Cucurbita maxima]	[more]
XP_023536478.1	5.2e-101	71.68	uncharacterized protein LOC111797643 [Cucurbita pepo subsp. pepo]	[more]
XP_008463764.1	7.5e-84	98.20	PREDICTED: uncharacterized protein LOC103501830 [Cucumis melo]	[more]

BLAST of MELO3C025659.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53460.1	1.2e-46	47.52	BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfa...	[more]
AT1G55040.1	1.0e-10	30.77	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	1.3e-08	30.83	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G48570.1	8.1e-08	29.77	zinc finger (Ran-binding) family protein	[more]

BLAST of MELO3C025659.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C025659.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4J9\|A0A0A0L4J9_CUCSA	2.5e-136	90.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625010 PE=4 SV=1	[more]
tr\|A0A1S3CK23\|A0A1S3CK23_CUCME	4.9e-84	98.20	uncharacterized protein LOC103501830 OS=Cucumis melo OX=3656 GN=LOC103501830 PE=...	[more]
tr\|A0A2I4GYC6\|A0A2I4GYC6_9ROSI	9.7e-64	67.98	uncharacterized protein LOC109011933 OS=Juglans regia OX=51240 GN=LOC109011933 P...	[more]
tr\|A0A1S4CPA8\|A0A1S4CPA8_TOBAC	1.9e-59	66.86	uncharacterized protein LOC107821009 OS=Nicotiana tabacum OX=4097 GN=LOC10782100...	[more]
tr\|A0A1S4DCV3\|A0A1S4DCV3_TOBAC	2.5e-59	66.28	uncharacterized protein LOC107828468 OS=Nicotiana tabacum OX=4097 GN=LOC10782846...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C025659.2	MELO3C025659.2	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C025659.2.1	MELO3C025659.2.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025659.2.1.five_prime_UTR.1	MELO3C025659.2.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025659.2.1.exon.3	MELO3C025659.2.1.exon.3	exon
MELO3C025659.2.1.exon.2	MELO3C025659.2.1.exon.2	exon
MELO3C025659.2.1.exon.1	MELO3C025659.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025659.2.1.CDS.3	MELO3C025659.2.1.CDS.3	CDS
MELO3C025659.2.1.CDS.2	MELO3C025659.2.1.CDS.2	CDS
MELO3C025659.2.1.CDS.1	MELO3C025659.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025659.2.1.three_prime_UTR.1	MELO3C025659.2.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 100..275
None	No IPR available	PANTHER	PTHR23111:SF24	SUBFAMILY NOT NAMED	coord: 100..275