MELO3C023238 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023238
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative gamma-secretase subunit PEN-2
Location	chr11 : 459922 .. 466498 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAAGGGAGAAGGAACAGTTTAGCTTTAAGGATTCTGTTTCTCAAAGTCATTCGAACTCCTCTTGCAATGGAGACCTCGCATAATCCAAACGCAAACACCAATTCCAATCCTAATACCATAACGTCGCCAATTCCTGTGTTATGGCCGACCATTGATGGCTCTCTGGGTTTGTCGGAGGAAGAATCGGTGAGCTATGCCCGTAGGTTCTACAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTTCGCTCCCGCTCGTTTCCTCGCATCCGACCCTGTGAGTTTTAACTTCTACTTTAAATTATTTCATAAATTTACACTTATACCTGATCTTTAAACCACGATAAACTTGAAATTTTCATACTTATTGCTGTTCGAAGAAAAATATGATTCGGATCCAGATCCTGTTGTTGGGTTTATCATACCTCAGTATTCATGAGCATCAACGATTATTCTTTGTTGTTGTTCTGTTTTTTTCGTTATATTTTAACTCCATTCTGCTTCACTAGTTATGTTTTAATGTGTGGAAGGCCAAAACTCAAATTATTTTGTACAGAAATACATGATGCTATTGTAATGTTGATATTTGTGTTAAAAAAACTGACGCCCATCGGTTAATCCTTGTTCATTTGTTGTTTTTTTCGTAGGCTTGGTATCTAGGTACTAGGCGTGTTTATTTGTGCAAATATCCTACCTTTCTAGTTATTCCTTCTTTTTGTTGTTTGCTTCATCGTGGCGACTACATTATTCTTTTGAGTTTGATAGCTTTTATAATAATACGTTAAGCGATGATACCTTGGTACTCCTCACAATTTGATGAATAAAATGGATAAAAGATTCGTAATCATGTTCAAATTCATTAAATTGAGCCTTAAGACTTTGTTGTTCTTTTCCTCAGGCTTGGTCTGTAGATACTAGGAGTTCTAACCTGATTATTTGTGCAAATACCCTGACTGTTTTATTCTACAAAGCATATACATATATATATTGGGTGCATCAAATGGGGATCGGAGGAACTTGAACCTTTGACCCCAAGTAAGGTAGCACACTGTAATTACTACTAACCTAGGCTCACTTTAATCAAAGTACTAATGCTTTTGAAGGAAGATAAAAATTATTGGCTCTTACGCTTCAAGTAGACAACATTTGCCAATAAGCTTTCGGTTGTGTGTTGAAGTTCTAATTCAATTGAGCTTTCCTATGCATATCCCATTACCTAGGACACCCAAGTATGCAGCAATCTGAAGTTTTGGCCTTAGATTATTTGTCATGGTGGTCTTTCAACTTCATTTGGCATATCCTCTTTTTGGGAATTATGCATATGAACTTTGTTATGCATCTATCTTATCCACCTAGAGCTGTGTGTACACGTATATATGTACAAATTTAATCATAAACCAACTAGGCAAATTAGGATGGCTATGCATACAAGAAGGGTGGGTCTTGTGTGTTTCCATGCATATGGATGAGAAACCCTCAAAAGGGGACAATCCATGGTTGTTTACTATACATTGAATGCATTATCTCTGTCTTCACATATCTCCTTTGTCGTACGAGCACTGGTTGTTTGTAGTGGAGATACTCTCCAAAACCCTAGGTTCAAGCCCATGGAAAATAAGAGTGGCTTGTTTTTGTGAGTGTGTGTTGTATGTAATTTAGCTAATAAGGGTGGCCTACCTTGGAGCGTATGCCTATATATCCATGGATTTAATTCAAAATTGACTAGGGGAGAAAAGTTTGGTTGTGTGTGTAGCAAGGTTGGTTTTTTTATACGTGTATTAGGGGTCATTAAACTTAAAGTTATTATGTGCTTGTTCTTACTTTCAGTTTAAATGATCCAATTCAACTTTCAATTTTTTATTTTTATTTTTATGTCTGTACATCCATGCTACACAGAACCTGCTAGTGATAATTATTAAGGAGAATTGTTTTATAGTGTGATTTATAGTTCACTGTAACAATGACTATTATAATTTTAATACAACAATGAGTTTGTTTGAGATCAATACTCTATATGCTTGAAAGCTTTTCAGACGGTCACTCTGATGCTGGAGTTTTCAAGATCAATAACTTTGGAGGATACTCCTTTTTCAAGACCATTTATCATTGGTAACACAGATAGAATTCTATATTTATTTTCAACAAATCGTAGAAGTTCCACATGTCTTAGAAAGATGAGTTGTTTCTTTGGGTTTGTTTACTATGAAAAGTTTGAGATGAAGTCCAGGATTTTGTATCATCTCTCTCTGAATGGGTGTCCTAGGTAATTGCAATAGTTGAAACTTTTAGGATGAGATCGCAGCCATAGGACGACGATCCACTGAACTTTAGCATGAGGAGATGGTACCGAGGACTCCCTCGTTCAAATTCTAATAATAGGTGTTACAACTTCCGAAGGAAGTCGGTCAACATATTTTCAGTCATTACTTATCGGTCTTTAATCAAGAGTACCGAAGAATTAATGAGGGTATAACTAGGCCTAGGAGTGAAATTGAGAACTTGGGAGTTTCCTGTTTTCCTAGCTTTTGTAGATGGTGTTCCTTACATAAAGATATTTACGATTGATTCTCATCTTTTATTCAAATAACTTGGTAGTCTTTTCATTTTTTGTGATCTCCTTGATTTTTTCTGGGAGAGGGTCAGATATCTTGTCGTTCTACAAAGTTCCCATAACTTTAGGCTATCATAATTTTTCTCTAGAAATTTTGGGTATGTATCTCTGTTTATAGTTATTCCTAGAACCACGTTATGGTAGAGTATTCATTTCTATTTAATAGACATTTACTTGAACTGTTTGACTGTTTTTCACATTAACTACTTTTAGGCTCAGTACAATTACCTAACGATTTGAAATTATCGTTTCTTTAGATATTGTTTAATGATTGGAAATTGTTGTTTTTGTTTAACAATTTGAAATTGTTGTTTCTTTAGATATTGTTGGCTCAGCTATCGGCTTTGGTGTTTCCATGGCCATTATCTCGTCTTGGGCATTGACATTTTCCATCGGAGGAGAACGCCTGTTTGGACCTGTTTGGGATAAACTAGTGATGTACAATCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCCTCTCTTCGGCAACCAACTTCAACCTTCTTGTATATATCAAAATCTGTAACTCTCTACTGTCATTGTTTTCTTGAAAGATCAAAGTTGAAGCTTTTGGTTTCCCTTCTTCAAGTGTTCCAATTGTCGAACATGAACCTTTGCATTACCCATGTTGATTCTTGTTAATAGTTGATTCACAAGTTTGAATCGGGTCTCCCTTCAACGGCGGACTAAGATTTGTGGATAAAATTCTAAACCGGTTCTCTTGAATTCTTCTTTGCTTTCTTTTTGTCCCACTTTCAATACTATAAGCCGTGCTCTTTTCTGGTTCCCCTACATCAAAACATCCATTTTGAAGGTTGAAAACATCTTGAAGCAAGTTAGAAACTCCCTTAAAATTCTTAAGGGACAGTGTACAGTGATCAACAATCCCCAAAAGAAAGGTATGATTGTATACTGTTACACTTCTTGTTATGG

mRNA sequence

AGAAAAAGGGAGAAGGAACAGTTTAGCTTTAAGGATTCTGTTTCTCAAAGTCATTCGAACTCCTCTTGCAATGGAGACCTCGCATAATCCAAACGCAAACACCAATTCCAATCCTAATACCATAACGTCGCCAATTCCTGTGTTATGGCCGACCATTGATGGCTCTCTGGGTTTGTCGGAGGAAGAATCGGTGAGCTATGCCCGTAGGTTCTACAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTTCGCTCCCGCTCGTTTCCTCGCATCCGACCCTATATTGTTGGCTCAGCTATCGGCTTTGGTGTTTCCATGGCCATTATCTCGTCTTGGGCATTGACATTTTCCATCGGAGGAGAACGCCTGTTTGGACCTGTTTGGGATAAACTAGTGATGTACAATCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCCTCTCTTCGGCAACCAACTTCAACCTTCTTGTATATATCAAAATCTGTAACTCTCTACTGTCATTGTTTTCTTGAAAGATCAAAGTTGAAGCTTTTGGTTTCCCTTCTTCAAGTGTTCCAATTGTCGAACATGAACCTTTGCATTACCCATGTTGATTCTTGTTAATAGTTGATTCACAAGTTTGAATCGGGTCTCCCTTCAACGGCGGACTAAGATTTGTGGATAAAATTCTAAACCGGTTCTCTTGAATTCTTCTTTGCTTTCTTTTTGTCCCACTTTCAATACTATAAGCCGTGCTCTTTTCTGGTTCCCCTACATCAAAACATCCATTTTGAAGGTTGAAAACATCTTGAAGCAAGTTAGAAACTCCCTTAAAATTCTTAAGGGACAGTGTACAGTGATCAACAATCCCCAAAAGAAAGGTATGATTGTATACTGTTACACTTCTTGTTATGG

Coding sequence (CDS)

ATGGAGACCTCGCATAATCCAAACGCAAACACCAATTCCAATCCTAATACCATAACGTCGCCAATTCCTGTGTTATGGCCGACCATTGATGGCTCTCTGGGTTTGTCGGAGGAAGAATCGGTGAGCTATGCCCGTAGGTTCTACAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTTCGCTCCCGCTCGTTTCCTCGCATCCGACCCTATATTGTTGGCTCAGCTATCGGCTTTGGTGTTTCCATGGCCATTATCTCGTCTTGGGCATTGACATTTTCCATCGGAGGAGAACGCCTGTTTGGACCTGTTTGGGATAAACTAGTGATGTACAATCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAG

Homology

[Close]

BLAST of MELO3C023238 vs. Swiss-Prot
Match: PEN2_ARATH (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.7e-42
Identity = 93/158 (58.86%), Postives = 107/158 (67.72%), Query Frame = 1


Query: 4   SHNPNANTNSNP-NTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVN 63
           + NPN N N NP +TI S   V WPTIDG LGL+EE SV YARRFYKFGFALLP+LW VN
Sbjct: 16  NRNPNPNPNPNPLSTIISSAQV-WPTIDGPLGLTEEASVDYARRFYKFGFALLPWLWFVN 75

Query: 64  CFYFWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVSM 123
           CFYFWPVLR SR+FP+IR                              +V SAIGF V  
Sbjct: 76  CFYFWPVLRHSRAFPQIRNY----------------------------VVRSAIGFSVFT 135

Query: 124 AIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTG 160
           A++S+WALTFSIGGE+LFGP++DKLVMYN+AD+LGL+G
Sbjct: 136 ALLSAWALTFSIGGEQLFGPLYDKLVMYNVADRLGLSG 144

[Close]

BLAST of MELO3C023238 vs. TrEMBL
Match: A0A0A0LK38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302290 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.8e-63
Identity = 126/161 (78.26%), Postives = 128/161 (79.50%), Query Frame = 1


Query: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           MET  NPNANTNSNPNTI+SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120
           VNCFYFWPVLRSRSFPRIRP                             IVGSAIGFGV 
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPY----------------------------IVGSAIGFGVF 120

Query: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           MAIISSWALTFSIGGERLFGPVWDKLVMYNLADK+GLTGWS
Sbjct: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKVGLTGWS 133

[Close]

BLAST of MELO3C023238 vs. TrEMBL
Match: A0A0B0P0S7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_09592 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.1e-48
Identity = 102/158 (64.56%), Postives = 118/158 (74.68%), Query Frame = 1


Query: 6   NPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFY 65
           NPN+N  +N N+I S  PV WPTIDG LGLSEEES+SYARRFYKFG+ALLPFLWAVNCFY
Sbjct: 19  NPNSNYTNNSNSILSSTPV-WPTIDGPLGLSEEESLSYARRFYKFGYALLPFLWAVNCFY 78

Query: 66  FWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIID-IVGSAIGFGVSMAI 125
           FWPVLR SRSFPR+RP  + +               P S P  ++ +V SAIGF V   I
Sbjct: 79  FWPVLRHSRSFPRLRPCDRRLL-------------APKSAPCALEYVVSSAIGFSVFSVI 138

Query: 126 ISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           +SSWALTF+IGGE LFG  WD+LVMYN+AD+LGLTGWS
Sbjct: 139 LSSWALTFAIGGEHLFGSTWDQLVMYNVADRLGLTGWS 162

[Close]

BLAST of MELO3C023238 vs. TrEMBL
Match: A0A0B2PPM2_GLYSO (Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_011887 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.0e-47
Identity = 102/157 (64.97%), Postives = 111/157 (70.70%), Query Frame = 1


Query: 6   NPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFY 65
           NPN N N N N++ S +PV WPTIDG LGLSEEESV YARRFYKFGFALLP LWAVNCFY
Sbjct: 10  NPNPNPNRN-NSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFALLPLLWAVNCFY 69

Query: 66  FWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVSMAII 125
           FWP LR S SFPRIRP                             +VGSAIGF V   ++
Sbjct: 70  FWPALRHSHSFPRIRPY----------------------------VVGSAIGFAVFATLL 129

Query: 126 SSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           SSWALTF+IGGERLFGPVWD+LVMYNLAD+LGLTGWS
Sbjct: 130 SSWALTFAIGGERLFGPVWDQLVMYNLADRLGLTGWS 136

[Close]

BLAST of MELO3C023238 vs. TrEMBL
Match: I1KBJ6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.0e-47
Identity = 102/157 (64.97%), Postives = 111/157 (70.70%), Query Frame = 1


Query: 6   NPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFY 65
           NPN N N N N++ S +PV WPTIDG LGLSEEESV YARRFYKFGFALLP LWAVNCFY
Sbjct: 10  NPNPNPNRN-NSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFALLPLLWAVNCFY 69

Query: 66  FWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVSMAII 125
           FWP LR S SFPRIRP                             +VGSAIGF V   ++
Sbjct: 70  FWPALRHSHSFPRIRPY----------------------------VVGSAIGFAVFATLL 129

Query: 126 SSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           SSWALTF+IGGERLFGPVWD+LVMYNLAD+LGLTGWS
Sbjct: 130 SSWALTFAIGGERLFGPVWDQLVMYNLADRLGLTGWS 136

[Close]

BLAST of MELO3C023238 vs. TrEMBL
Match: I1JY18_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G212600 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.6e-47
Identity = 102/160 (63.75%), Postives = 112/160 (70.00%), Query Frame = 1


Query: 6   NPNANTNSNP---NTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVN 65
           NPN N N NP   N++ S +P LWPTIDG LGLSEEESV YARRFY FGFALLP LWAVN
Sbjct: 19  NPNPNPNPNPHRNNSVASSMP-LWPTIDGPLGLSEEESVGYARRFYTFGFALLPLLWAVN 78

Query: 66  CFYFWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVSM 125
           CFYFWPVLR S SFPRIRP                             +VGSAIGF V  
Sbjct: 79  CFYFWPVLRHSHSFPRIRPY----------------------------VVGSAIGFAVCA 138

Query: 126 AIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
            ++SSW+LTF+IGGERLFGPVWD+LVMYNLAD+LGLTGWS
Sbjct: 139 TLLSSWSLTFAIGGERLFGPVWDQLVMYNLADRLGLTGWS 149

[Close]

BLAST of MELO3C023238 vs. TAIR10
Match: AT5G09310.1 (AT5G09310.1 Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379))

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-43
Identity = 93/158 (58.86%), Postives = 107/158 (67.72%), Query Frame = 1


Query: 4   SHNPNANTNSNP-NTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVN 63
           + NPN N N NP +TI S   V WPTIDG LGL+EE SV YARRFYKFGFALLP+LW VN
Sbjct: 16  NRNPNPNPNPNPLSTIISSAQV-WPTIDGPLGLTEEASVDYARRFYKFGFALLPWLWFVN 75

Query: 64  CFYFWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVSM 123
           CFYFWPVLR SR+FP+IR                              +V SAIGF V  
Sbjct: 76  CFYFWPVLRHSRAFPQIRNY----------------------------VVRSAIGFSVFT 135

Query: 124 AIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTG 160
           A++S+WALTFSIGGE+LFGP++DKLVMYN+AD+LGL+G
Sbjct: 136 ALLSAWALTFSIGGEQLFGPLYDKLVMYNVADRLGLSG 144

[Close]

BLAST of MELO3C023238 vs. NCBI nr
Match: gi|659121942|ref|XP_008460893.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo])

HSP 1 Score: 333.6 bits (854), Expect = 2.0e-88
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120
           VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120

Query: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS
Sbjct: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 161

[Close]

BLAST of MELO3C023238 vs. NCBI nr
Match: gi|778670219|ref|XP_011649406.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 8.3e-63
Identity = 126/161 (78.26%), Postives = 128/161 (79.50%), Query Frame = 1


Query: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           MET  NPNANTNSNPNTI+SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120
           VNCFYFWPVLRSRSFPRIRP                             IVGSAIGFGV 
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPY----------------------------IVGSAIGFGVF 120

Query: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           MAIISSWALTFSIGGERLFGPVWDKLVMYNLADK+GLTGWS
Sbjct: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKVGLTGWS 133

[Close]

BLAST of MELO3C023238 vs. NCBI nr
Match: gi|828315352|ref|XP_012571901.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cicer arietinum])

HSP 1 Score: 199.5 bits (506), Expect = 4.4e-48
Identity = 103/159 (64.78%), Postives = 114/159 (71.70%), Query Frame = 1


Query: 4   SHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNC 63
           ++NPN N NSNP  + S +P LWPTIDG LGLSEEESV YARRFYKFGFALLP LWAVNC
Sbjct: 8   TNNPNLNLNSNP--LASSVP-LWPTIDGPLGLSEEESVKYARRFYKFGFALLPLLWAVNC 67

Query: 64  FYFWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVSMA 123
           FYFWPV+R SRSFP IRP                             +VGSAIGF +S A
Sbjct: 68  FYFWPVIRHSRSFPTIRPY----------------------------VVGSAIGFTISAA 127

Query: 124 IISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           ++ SWALTFSIGGERLFGPVWD+LVMYNLAD+ GLTGWS
Sbjct: 128 LLCSWALTFSIGGERLFGPVWDQLVMYNLADRFGLTGWS 135

[Close]

BLAST of MELO3C023238 vs. NCBI nr
Match: gi|728840845|gb|KHG20288.1| (hypothetical protein F383_09592 [Gossypium arboreum])

HSP 1 Score: 199.5 bits (506), Expect = 4.4e-48
Identity = 102/158 (64.56%), Postives = 118/158 (74.68%), Query Frame = 1


Query: 6   NPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFY 65
           NPN+N  +N N+I S  PV WPTIDG LGLSEEES+SYARRFYKFG+ALLPFLWAVNCFY
Sbjct: 19  NPNSNYTNNSNSILSSTPV-WPTIDGPLGLSEEESLSYARRFYKFGYALLPFLWAVNCFY 78

Query: 66  FWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIID-IVGSAIGFGVSMAI 125
           FWPVLR SRSFPR+RP  + +               P S P  ++ +V SAIGF V   I
Sbjct: 79  FWPVLRHSRSFPRLRPCDRRLL-------------APKSAPCALEYVVSSAIGFSVFSVI 138

Query: 126 ISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           +SSWALTF+IGGE LFG  WD+LVMYN+AD+LGLTGWS
Sbjct: 139 LSSWALTFAIGGEHLFGSTWDQLVMYNVADRLGLTGWS 162

[Close]

BLAST of MELO3C023238 vs. NCBI nr
Match: gi|955324463|ref|XP_014631956.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Glycine max])

HSP 1 Score: 196.8 bits (499), Expect = 2.9e-47
Identity = 102/157 (64.97%), Postives = 111/157 (70.70%), Query Frame = 1


Query: 6   NPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFY 65
           NPN N N N N++ S +PV WPTIDG LGLSEEESV YARRFYKFGFALLP LWAVNCFY
Sbjct: 10  NPNPNPNRN-NSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFALLPLLWAVNCFY 69

Query: 66  FWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVSMAII 125
           FWP LR S SFPRIRP                             +VGSAIGF V   ++
Sbjct: 70  FWPALRHSHSFPRIRPY----------------------------VVGSAIGFAVFATLL 129

Query: 126 SSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           SSWALTF+IGGERLFGPVWD+LVMYNLAD+LGLTGWS
Sbjct: 130 SSWALTFAIGGERLFGPVWDQLVMYNLADRLGLTGWS 136

The following BLAST results are available for this feature:

BLAST of MELO3C023238 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PEN2_ARATH	4.7e-42	58.86	Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2...	[more]

BLAST of MELO3C023238 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK38_CUCSA	5.8e-63	78.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302290 PE=4 SV=1	[more]
A0A0B0P0S7_GOSAR	3.1e-48	64.56	Uncharacterized protein OS=Gossypium arboreum GN=F383_09592 PE=4 SV=1	[more]
A0A0B2PPM2_GLYSO	2.0e-47	64.97	Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_011887 PE=4 SV...	[more]
I1KBJ6_SOYBN	2.0e-47	64.97	Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1	[more]
I1JY18_SOYBN	2.6e-47	63.75	Uncharacterized protein OS=Glycine max GN=GLYMA_04G212600 PE=4 SV=1	[more]

BLAST of MELO3C023238 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09310.1	2.7e-43	58.86	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 sub...	[more]

BLAST of MELO3C023238 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121942\|ref\|XP_008460893.1\|	2.0e-88	100.00	PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo]	[more]
gi\|778670219\|ref\|XP_011649406.1\|	8.3e-63	78.26	PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis sativus]	[more]
gi\|828315352\|ref\|XP_012571901.1\|	4.4e-48	64.78	PREDICTED: probable gamma-secretase subunit PEN-2 [Cicer arietinum]	[more]
gi\|728840845\|gb\|KHG20288.1\|	4.4e-48	64.56	hypothetical protein F383_09592 [Gossypium arboreum]	[more]
gi\|955324463\|ref\|XP_014631956.1\|	2.9e-47	64.97	PREDICTED: probable gamma-secretase subunit PEN-2 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019379	Gamma_Secretase_Asp_P_PEN2
IPR019379	Gamma_Secretase_Asp_P_PEN2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:1990570	GDP-mannose transmembrane transport
cellular_component	GO:0005798	Golgi-associated vesicle
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0070765	gamma-secretase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005458	GDP-mannose transmembrane transporter activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54446	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023238T3	MELO3C023238T3	mRNA
MELO3C023238T2	MELO3C023238T2	mRNA
MELO3C023238T1	MELO3C023238T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54446	MU54446	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023238	Csa2G302290	Cucumber (Chinese Long) v2	cumeB100
MELO3C023238	Cla007814	Watermelon (97103) v1	mewmB123
MELO3C023238	ClCG02G000500	Watermelon (Charleston Gray)	mewcgB091
MELO3C023238	Cla97C02G026740	Watermelon (97103) v2	mewmbB093
MELO3C023238	CSPI02G15770	Wild cucumber (PI 183967)	cpimeB100
MELO3C023238	Cucsa.249870	Cucumber (Gy14) v1	cgymeB424
MELO3C023238	CmaCh02G006350	Cucurbita maxima (Rimu)	cmameB550
MELO3C023238	CmaCh20G010610	Cucurbita maxima (Rimu)	cmameB491
MELO3C023238	CmoCh20G010690	Cucurbita moschata (Rifu)	cmomeB486
MELO3C023238	Lsi10G007320	Bottle gourd (USVL1VR-Ls)	lsimeB056
MELO3C023238	CsGy2G015760	Cucumber (Gy14) v2	cgybmeB086
MELO3C023238	Carg24316	Silver-seed gourd	carmeB0713
MELO3C023238	CsaV3_2G018330	Cucumber (Chinese Long) v3	cucmeB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023238	Wax gourd	mewgoB131
MELO3C023238	Cucurbita moschata (Rifu)	cmomeB492
MELO3C023238	Cucurbita moschata (Rifu)	cmomeB540
MELO3C023238	Cucurbita pepo (Zucchini)	cpemeB261
MELO3C023238	Cucurbita pepo (Zucchini)	cpemeB268
MELO3C023238	Cucurbita pepo (Zucchini)	cpemeB657
MELO3C023238	Silver-seed gourd	carmeB1026