ClCG02G000500 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G000500
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Gamma-secretase subunit PEN-2
Location	CG_Chr02 : 530787 .. 534664 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATAGAGTCATTGAAACTCGTTTTGGTTTTGCAATGGAGAGCTCGCAGAATCCAAACACAAACACCAATTCTAACCCTAATCCCAATCGAAACCAGAATCCCGTATCCTCGCCGATTGCTGTGTTATGGCCTACCATTGATGGCTCACTAGGGTTGTCGGAGGAAGAGTCGGTGAGCTATGCCCGCAGGTTCTATAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTCCGCTCTGGCTCATTTCCTCGCATCCGACCCTGTGAGTTTGCCTCCCTCTCTTTAACTTCGATGCACGCATCTCTACTTTCAACTATTTCCTTATAGGTGATCTTTATAGGATGATAAACCGGAAATTTACATAGTTATTGCTGTTCAAAGGAGAATATGATTCCGACCCTATTCTTGGGTTTATCTTACTTCAATATTCTAATGATGGTAGGATCAAGGTTCATTGGTTGTTGTTGTCCTGGTTTTTTCACTAGTTATGTTTTAATGCGTGGAAAGCCAAAATTGAAATTATTTTGTACAGATATTCCTGATGCCGTTGTAATGTAGATATTTGTATTAAAAAAACTGAGCGCCCATCCATTTTTCCTTGTCCATTTGTTGTTCTTTCTCTTAGGCGTCATCTGTAGATACTAGGAGTTCTAACCTGTTTATTTGTGCAAATATCCTGACCTTTGTAATAATTCCCCTTTCTTCTCTTTGCTGTTTGCTCCATCATATTGGGACATGGCGATTACATTATTGTCTTGAGTTTGATGTGGCGATTACATTGTTGTCTTGAGTTTGATATGGCGATTTCATTGTTGTCTTGAGTTGGATAGCTTTCATAATAATGACTTAAGCAATGATACATTGATACTCCTCGTAATTTGATGAATAAAATGGATAAAACTATCAGTAATCGTGTTCAAATTCATTAAATTGAGCCTTAAGAATTTGATAATCTTTCTCTTAGGACCAACTAAGAGTTCTAACCTGTTTGTTTGTGCAAATACCCTGACCGTTTTGCGTTCTACAAAGTACAAACATATTTTTTTTGGGTACATCAAATGGGGATAGGGGGAAATGGGAATTTGAACCTCTTTCCTCAAGAGAGGTAGGTAGTACATGCTAATCACTACTAAGCTAGGCTCACTTTGGTCAAAGTACTAATGCTTGTGAAGGAACCTAAAAATTCTTGGCTATTATGCTCCAATTATACAACATTTGTAAATAAGCCTCCAATTGCTTGTCAAAGTTGCATTTCCATTGAGCTTTATTATGCATATCCTGTTTTCTTTTTTATAATTCTTTTTGTAAAAAGAATGTGGTCAAGATTCTTGGTTCTTGCCTTCCAAGTATGCAACAATTTAGAATTTTGGCTTCAAATTATTTGTCATGGTTGTTTATTTCAACTTCATTTAGCATATCCTATTTTTGGGAATTATGCGGATGAACATCATTATGCATCTATCTGGTCTACCTAGGGCTGTGTGTACACGTGTATATGTACAAATTTAACTATGAACCAACTAGAAAAATTTGGATGGTTATGTATGTAAGAAGGGTGGGTTTTGTCTGTTTGCATGCATGTGGGTGAGAAGCCCTCAGAAGAGGCTAATCCATGGTGGTTTATTATACGTTGAATGCATCATCTCTTCTTTCATGTATCTCCTTCGTGGTAAGGGCATTGATTGTTTGAAGATACTCTCCAAGGCCCTGGGTTCAAGCCCCCTAAGAAAATAAAAGTGGCTTTTTGTGTGATTGTGTGTTGTATGTAATATAACTAATAAGGGTGGTCTACTTTGGAGTGCATGAGTATATATGTATCAATTTAGGGGGTGTTTGGCCCACCAACTACATAAATTGGTGTTAAACAACTCAACTTCAATAGTAAATACTATTAAAGTTTGCACATTTATCGAGGAACTTCATCTTCTCCTCTTTCTCTGTTTTGAACCTTTATCAAGGAACTCCATCTCACAACTTTGCACCCCAAATATAGACTTTCTAACTTCAACATATTAACTCTAGACTTCATAACTCAAGTCAGTGCCCTAAACACCCCCTTAATTCTAAACTAATTAGGGGAGTGAGGTTGGTTGTGTGTTTGAGTGTAGCAAGGGTGGTTTTTTTGTGTGTGTATAATAGGGTGCATTCTTTTTTGAGATACTCTCGCAAGCCTTGGGTTCAACCTATGAGCTTGAAAACTTAATAACCTATAGTAAGGGTTCTTTCTTTTTGTTCCTTTTATTTTTTATTTTTTATTAGGGAGATATTCTCCAAGGGTTTAGGTTACTTTTAGTTTAAATGATCTAATTCAATTTAATTTTGATATTTATATTTGTACATCCATGCTAGCTTATGCACGCCTCAACTAGTTACAATTGTGAAAGAAAAATGCTTTATAGTGGAATTTATAGTTTTACTGCAACCGTGAAAACTATACTTGTAATATAACAATGAATTTATTTGAGATCAATACTCTATATACTTGAAAGCCTTTCCATTGAGTCACTCTGATATTGGAGTTTTCAAGATAAAAAATTTTGGAGGATACTTCTCTTGCAAGACCGTTTATATCAGTGGTAACACAGATTGAAGTCTATATTTATTTGTATTTGCAACAAATTGTAGAAGTTCATCATGCCTAAGAAAGTTGAGTTGTTTCTTTGGGTTTATTTACTATGAAGTTTGACACTCTAGATAAAGTTCAGAATTTTGTATCATCTCTCTGGAAGGGTGTCCTAGGTAATTGAAATGTTTTGGATAGGATCAAAGCCATATGACGATCCACTGAACTTTAGCATGAGGATATGGTACAACATTCTGGATCTTTTCAACCTAATGTGGTGCTTTCCGGCCAGCACTCAGGACTCCCCTGTTCAATTTCTAATAATAGGTTACAGCTTCCAAAGGAAGTCAGTCACCATATTTTCAGTCATAAATTTTTTATCTTTAGTCAAAAGTACATAAGAATTATTGAGGGTATAACTAGGCCTAGGAGTGAAATCGAGTACTTAACAGTTTTCCTGGCTTTTCTGGATGGTGTTCCTTGCATATAGAGATTTATAATTGATTCTCATCTTCTATTCAAATAAATTGGTGATCCTTTTATTTTTTTGGTAATCTCCTTGGCCTTTTGGGGAGGGTCAGATATCTTGTCTTTCATCAAAGCTTCAATAACTCTAGGCTGGCTATCATGATTTTTCTTTATGAATTTTGTCAAGGTAGTTTCTATAGTTATTCCTAGAACCACATTATGGTGAGTATTCATTTTTATTTAATAGAAATTTGCTTCTACTATTTTTCCCCTTGACTACTTTTGGTGCTCAGTAAAACTACCTAACGGTTTGAAATTGTTGTTCCTTTAGATATTGTTGGCTCAGCTATTGGTTTTGGTGTTTTCATGGCAATTATCTCGTCTTGGGCATTGACATTTTCCATTGGAGGTGAACGCCTGTTTGGACCTGTTTGGGATAAACTCGTGATGTACAACCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCCTCCCTTCATCAACCAACTTCGACCCTGTTTTTGTATATTTCAAAATGTGTAACTCACTACTGTCGTTCTTTTCTTGAAAGATCAAATTTGAAGCTTTTGGTTTCACTTCTCCAAGTGCTTCAAGTGTCAAACATAAACATATAGGACCTCATTTCAGAGCTTTTCACCCTTCTGAAGGGATCTCAAATTAAACATAATTGAAATGTAAATATCAAGTTAAACAAACACATTCTTTAAAAAACACTTGAATTTGCATTGCCATGCTTATGCTGGTTAATAGTCGTTGCACAAGTTTTGAAGCGGTTCACCCTTCA

mRNA sequence

GTATAGAGTCATTGAAACTCGTTTTGGTTTTGCAATGGAGAGCTCGCAGAATCCAAACACAAACACCAATTCTAACCCTAATCCCAATCGAAACCAGAATCCCGTATCCTCGCCGATTGCTGTGTTATGGCCTACCATTGATGGCTCACTAGGGTTGTCGGAGGAAGAGTCGGTGAGCTATGCCCGCAGGTTCTATAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTCCGCTCTGGCTCATTTCCTCGCATCCGACCCTATATTGTTGGCTCAGCTATTGGTTTTGGTGTTTTCATGGCAATTATCTCGTCTTGGGCATTGACATTTTCCATTGGAGGTGAACGCCTGTTTGGACCTGTTTGGGATAAACTCGTGATGTACAACCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCCTCCCTTCATCAACCAACTTCGACCCTGTTTTTGTATATTTCAAAATGTGTAACTCACTACTGTCGTTCTTTTCTTGAAAGATCAAATTTGAAGCTTTTGGTTTCACTTCTCCAAGTGCTTCAAGTGTCAAACATAAACATATAGGACCTCATTTCAGAGCTTTTCACCCTTCTGAAGGGATCTCAAATTAAACATAATTGAAATGTAAATATCAAGTTAAACAAACACATTCTTTAAAAAACACTTGAATTTGCATTGCCATGCTTATGCTGGTTAATAGTCGTTGCACAAGTTTTGAAGCGGTTCACCCTTCA

Coding sequence (CDS)

ATGGAGAGCTCGCAGAATCCAAACACAAACACCAATTCTAACCCTAATCCCAATCGAAACCAGAATCCCGTATCCTCGCCGATTGCTGTGTTATGGCCTACCATTGATGGCTCACTAGGGTTGTCGGAGGAAGAGTCGGTGAGCTATGCCCGCAGGTTCTATAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTCCGCTCTGGCTCATTTCCTCGCATCCGACCCTATATTGTTGGCTCAGCTATTGGTTTTGGTGTTTTCATGGCAATTATCTCGTCTTGGGCATTGACATTTTCCATTGGAGGTGAACGCCTGTTTGGACCTGTTTGGGATAAACTCGTGATGTACAACCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAG

Protein sequence

MESSQNPNTNTNSNPNPNRNQNPVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRSGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS

Homology

[Close]

BLAST of ClCG02G000500 vs. Swiss-Prot
Match: PEN2_ARATH (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.4e-50
Identity = 98/139 (70.50%), Postives = 115/139 (82.73%), Query Frame = 1


Query: 4   SQNPNTNT--NSNPNPNRNQNPVSSPI--AVLWPTIDGSLGLSEEESVSYARRFYKFGFA 63
           S +P+ N   N NPNPN N NP+S+ I  A +WPTIDG LGL+EE SV YARRFYKFGFA
Sbjct: 6   SDDPSLNPIRNRNPNPNPNPNPLSTIISSAQVWPTIDGPLGLTEEASVDYARRFYKFGFA 65

Query: 64  LLPFLWAVNCFYFWPVLR-SGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFG 123
           LLP+LW VNCFYFWPVLR S +FP+IR Y+V SAIGF VF A++S+WALTFSIGGE+LFG
Sbjct: 66  LLPWLWFVNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGEQLFG 125

Query: 124 PVWDKLVMYNLADKLGLTG 138
           P++DKLVMYN+AD+LGL+G
Sbjct: 126 PLYDKLVMYNVADRLGLSG 144

[Close]

BLAST of ClCG02G000500 vs. Swiss-Prot
Match: PEN2_BOVIN (Gamma-secretase subunit PEN-2 OS=Bos taurus GN=PSENEN PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.6e-08
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 41  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSGSFPRIRPYIVGSAIG 100
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P     S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFIVPAYTEQS--QIKGYVWRSAVG 65

Query: 101 FGVFMAIISSWALTFSIGGERLFGPVWDKLVMY 128
           F +++ ++S+W   F I     + P W  L  Y
Sbjct: 66  FFLWVIVLSTWITIFQI-----YRPRWGALGDY 91

[Close]

BLAST of ClCG02G000500 vs. Swiss-Prot
Match: PEN2_HUMAN (Gamma-secretase subunit PEN-2 OS=Homo sapiens GN=PSENEN PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 41  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSGSFPRIRPYIVGSAIG 100
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P     S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQS--QIKGYVWRSAVG 65

Query: 101 FGVFMAIISSWALTFSIGGERLFGPVWDKLVMY 128
           F  ++ +++SW   F I     + P W  L  Y
Sbjct: 66  FLFWVIVLTSWITIFQI-----YRPRWGALGDY 91

[Close]

BLAST of ClCG02G000500 vs. Swiss-Prot
Match: PEN2_MOUSE (Gamma-secretase subunit PEN-2 OS=Mus musculus GN=Psenen PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 41  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSGSFPRIRPYIVGSAIG 100
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P     S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLAPAYTEQS--QIKGYVWRSAVG 65

Query: 101 FGVFMAIISSWALTFSIGGERLFGPVWDKLVMY 128
           F  ++ I+++W   F I     + P W  L  Y
Sbjct: 66  FLFWVIILATWITIFQI-----YRPRWGALGDY 91

[Close]

BLAST of ClCG02G000500 vs. Swiss-Prot
Match: PEN2_RAT (Gamma-secretase subunit PEN-2 OS=Rattus norvegicus GN=Psenen PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-07
Identity = 32/93 (34.41%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 41  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSGSFPRIRPYIVGSAIG 100
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P     S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFKEAFFAPAYTEQS--QIKGYVWRSAVG 65

Query: 101 FGVFMAIISSWALTFSIGGERLFGPVWDKLVMY 128
           F  ++ ++++W   F I     + P W  L  Y
Sbjct: 66  FLFWVIVLTTWITIFQI-----YRPRWGALGDY 91

[Close]

BLAST of ClCG02G000500 vs. TrEMBL
Match: A0A0A0LK38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302290 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.8e-66
Identity = 125/139 (89.93%), Postives = 128/139 (92.09%), Query Frame = 1


Query: 1   MESSQNPNTNTNSNPNPNRNQNPVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFAL 60
           ME+ QNPN NTNSNPN       +SSPI VLWPTIDGSLGLSEEESVSYARRFYKFGFAL
Sbjct: 1   METLQNPNANTNSNPNT------ISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFAL 60

Query: 61  LPFLWAVNCFYFWPVLRSGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPV 120
           LPFLWAVNCFYFWPVLRS SFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPV
Sbjct: 61  LPFLWAVNCFYFWPVLRSRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPV 120

Query: 121 WDKLVMYNLADKLGLTGWS 140
           WDKLVMYNLADK+GLTGWS
Sbjct: 121 WDKLVMYNLADKVGLTGWS 133

[Close]

BLAST of ClCG02G000500 vs. TrEMBL
Match: A0A0B2PPM2_GLYSO (Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_011887 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.9e-55
Identity = 110/140 (78.57%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 1   MESSQNPNTNTNSNPNPNRNQNPVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFAL 60
           ME+SQ    + N NPNPNRN N V+S + V WPTIDG LGLSEEESV YARRFYKFGFAL
Sbjct: 1   MEASQG--NHPNPNPNPNRN-NSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFAL 60

Query: 61  LPFLWAVNCFYFWPVLR-SGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGP 120
           LP LWAVNCFYFWP LR S SFPRIRPY+VGSAIGF VF  ++SSWALTF+IGGERLFGP
Sbjct: 61  LPLLWAVNCFYFWPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGP 120

Query: 121 VWDKLVMYNLADKLGLTGWS 140
           VWD+LVMYNLAD+LGLTGWS
Sbjct: 121 VWDQLVMYNLADRLGLTGWS 136

[Close]

BLAST of ClCG02G000500 vs. TrEMBL
Match: I1KBJ6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.9e-55
Identity = 110/140 (78.57%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 1   MESSQNPNTNTNSNPNPNRNQNPVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFAL 60
           ME+SQ    + N NPNPNRN N V+S + V WPTIDG LGLSEEESV YARRFYKFGFAL
Sbjct: 1   MEASQG--NHPNPNPNPNRN-NSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFAL 60

Query: 61  LPFLWAVNCFYFWPVLR-SGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGP 120
           LP LWAVNCFYFWP LR S SFPRIRPY+VGSAIGF VF  ++SSWALTF+IGGERLFGP
Sbjct: 61  LPLLWAVNCFYFWPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGP 120

Query: 121 VWDKLVMYNLADKLGLTGWS 140
           VWD+LVMYNLAD+LGLTGWS
Sbjct: 121 VWDQLVMYNLADRLGLTGWS 136

[Close]

BLAST of ClCG02G000500 vs. TrEMBL
Match: I1JY18_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G212600 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.8e-55
Identity = 109/144 (75.69%), Postives = 118/144 (81.94%), Query Frame = 1


Query: 4   SQNPNTNTNSNPNPNRNQNP-------VSSPIAVLWPTIDGSLGLSEEESVSYARRFYKF 63
           S NPN N N NPNPN N NP       V+S +  LWPTIDG LGLSEEESV YARRFY F
Sbjct: 7   SNNPNPNPNPNPNPNPNPNPNPHRNNSVASSMP-LWPTIDGPLGLSEEESVGYARRFYTF 66

Query: 64  GFALLPFLWAVNCFYFWPVLR-SGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGER 123
           GFALLP LWAVNCFYFWPVLR S SFPRIRPY+VGSAIGF V   ++SSW+LTF+IGGER
Sbjct: 67  GFALLPLLWAVNCFYFWPVLRHSHSFPRIRPYVVGSAIGFAVCATLLSSWSLTFAIGGER 126

Query: 124 LFGPVWDKLVMYNLADKLGLTGWS 140
           LFGPVWD+LVMYNLAD+LGLTGWS
Sbjct: 127 LFGPVWDQLVMYNLADRLGLTGWS 149

[Close]

BLAST of ClCG02G000500 vs. TrEMBL
Match: A0A0B2RGU5_GLYSO (Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_012798 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 9.4e-54
Identity = 104/137 (75.91%), Postives = 116/137 (84.67%), Query Frame = 1


Query: 4   SQNPNTNTNSNPNPNRNQNPVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPF 63
           +Q+ + N N NPNP+RN +  SS    LWPTIDG LGLSEEESV YARRFY FGFALLP 
Sbjct: 3   AQSQSNNPNPNPNPHRNNSVASS--MPLWPTIDGPLGLSEEESVGYARRFYTFGFALLPL 62

Query: 64  LWAVNCFYFWPVLR-SGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWD 123
           LWAVNCFYFWPVLR S SFPRIRPY+VGSAIGF V   ++SSW+LTF+IGGERLFGPVWD
Sbjct: 63  LWAVNCFYFWPVLRHSHSFPRIRPYVVGSAIGFAVCATLLSSWSLTFAIGGERLFGPVWD 122

Query: 124 KLVMYNLADKLGLTGWS 140
           +LVMYNLAD+LGLTGWS
Sbjct: 123 QLVMYNLADRLGLTGWS 137

[Close]

BLAST of ClCG02G000500 vs. TAIR10
Match: AT5G09310.1 (AT5G09310.1 Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379))

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-51
Identity = 98/139 (70.50%), Postives = 115/139 (82.73%), Query Frame = 1


Query: 4   SQNPNTNT--NSNPNPNRNQNPVSSPI--AVLWPTIDGSLGLSEEESVSYARRFYKFGFA 63
           S +P+ N   N NPNPN N NP+S+ I  A +WPTIDG LGL+EE SV YARRFYKFGFA
Sbjct: 6   SDDPSLNPIRNRNPNPNPNPNPLSTIISSAQVWPTIDGPLGLTEEASVDYARRFYKFGFA 65

Query: 64  LLPFLWAVNCFYFWPVLR-SGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFG 123
           LLP+LW VNCFYFWPVLR S +FP+IR Y+V SAIGF VF A++S+WALTFSIGGE+LFG
Sbjct: 66  LLPWLWFVNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGEQLFG 125

Query: 124 PVWDKLVMYNLADKLGLTG 138
           P++DKLVMYN+AD+LGL+G
Sbjct: 126 PLYDKLVMYNVADRLGLSG 144

[Close]

BLAST of ClCG02G000500 vs. NCBI nr
Match: gi|659121942|ref|XP_008460893.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-59
Identity = 123/167 (73.65%), Postives = 126/167 (75.45%), Query Frame = 1


Query: 1   MESSQNPNTNTNSNPNPNRNQNPVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFAL 60
           ME+S NPN NTNSNPN       ++SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFAL
Sbjct: 1   METSHNPNANTNSNPNT------ITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFAL 60

Query: 61  LPFLWAVNCFYFWPVLRSGSFPRIRPY----------------------------IVGSA 120
           LPFLWAVNCFYFWPVLRS SFPRIRP                             IVGSA
Sbjct: 61  LPFLWAVNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSA 120

Query: 121 IGFGVFMAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 140
           IGFGV MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS
Sbjct: 121 IGFGVSMAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 161

[Close]

BLAST of ClCG02G000500 vs. NCBI nr
Match: gi|955324463|ref|XP_014631956.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Glycine max])

HSP 1 Score: 222.6 bits (566), Expect = 4.2e-55
Identity = 110/140 (78.57%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 1   MESSQNPNTNTNSNPNPNRNQNPVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFAL 60
           ME+SQ    + N NPNPNRN N V+S + V WPTIDG LGLSEEESV YARRFYKFGFAL
Sbjct: 1   MEASQG--NHPNPNPNPNRN-NSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFAL 60

Query: 61  LPFLWAVNCFYFWPVLR-SGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGP 120
           LP LWAVNCFYFWP LR S SFPRIRPY+VGSAIGF VF  ++SSWALTF+IGGERLFGP
Sbjct: 61  LPLLWAVNCFYFWPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGP 120

Query: 121 VWDKLVMYNLADKLGLTGWS 140
           VWD+LVMYNLAD+LGLTGWS
Sbjct: 121 VWDQLVMYNLADRLGLTGWS 136

[Close]

BLAST of ClCG02G000500 vs. NCBI nr
Match: gi|571451607|ref|XP_006578788.1| (PREDICTED: probable gamma-secretase subunit PEN-2 isoform X1 [Glycine max])

HSP 1 Score: 222.2 bits (565), Expect = 5.5e-55
Identity = 109/144 (75.69%), Postives = 118/144 (81.94%), Query Frame = 1


Query: 4   SQNPNTNTNSNPNPNRNQNP-------VSSPIAVLWPTIDGSLGLSEEESVSYARRFYKF 63
           S NPN N N NPNPN N NP       V+S +  LWPTIDG LGLSEEESV YARRFY F
Sbjct: 7   SNNPNPNPNPNPNPNPNPNPNPHRNNSVASSMP-LWPTIDGPLGLSEEESVGYARRFYTF 66

Query: 64  GFALLPFLWAVNCFYFWPVLR-SGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGER 123
           GFALLP LWAVNCFYFWPVLR S SFPRIRPY+VGSAIGF V   ++SSW+LTF+IGGER
Sbjct: 67  GFALLPLLWAVNCFYFWPVLRHSHSFPRIRPYVVGSAIGFAVCATLLSSWSLTFAIGGER 126

Query: 124 LFGPVWDKLVMYNLADKLGLTGWS 140
           LFGPVWD+LVMYNLAD+LGLTGWS
Sbjct: 127 LFGPVWDQLVMYNLADRLGLTGWS 149

[Close]

BLAST of ClCG02G000500 vs. NCBI nr
Match: gi|955317357|ref|XP_014630358.1| (PREDICTED: probable gamma-secretase subunit PEN-2 isoform X2 [Glycine max])

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-53
Identity = 104/137 (75.91%), Postives = 116/137 (84.67%), Query Frame = 1


Query: 4   SQNPNTNTNSNPNPNRNQNPVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPF 63
           +Q+ + N N NPNP+RN +  SS    LWPTIDG LGLSEEESV YARRFY FGFALLP 
Sbjct: 3   AQSQSNNPNPNPNPHRNNSVASS--MPLWPTIDGPLGLSEEESVGYARRFYTFGFALLPL 62

Query: 64  LWAVNCFYFWPVLR-SGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWD 123
           LWAVNCFYFWPVLR S SFPRIRPY+VGSAIGF V   ++SSW+LTF+IGGERLFGPVWD
Sbjct: 63  LWAVNCFYFWPVLRHSHSFPRIRPYVVGSAIGFAVCATLLSSWSLTFAIGGERLFGPVWD 122

Query: 124 KLVMYNLADKLGLTGWS 140
           +LVMYNLAD+LGLTGWS
Sbjct: 123 QLVMYNLADRLGLTGWS 137

[Close]

BLAST of ClCG02G000500 vs. NCBI nr
Match: gi|1021582755|ref|XP_016180776.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Arachis ipaensis])

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-53
Identity = 102/131 (77.86%), Postives = 116/131 (88.55%), Query Frame = 1


Query: 10  NTNSNPNPNRNQNPVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNC 69
           N++SNPNPN + +P+ S   + WPTIDG LGLSEEESVSYARRFYKFGFALLP LWAVNC
Sbjct: 19  NSSSNPNPNPDPSPIRSTGGI-WPTIDGPLGLSEEESVSYARRFYKFGFALLPLLWAVNC 78

Query: 70  FYFWPVLR-SGSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVMYN 129
           FYFWPVLR S SFPRIRPYIVGSA+GF VF A++ +WALTFS+GGERLFGPVWD+LVMYN
Sbjct: 79  FYFWPVLRHSRSFPRIRPYIVGSAVGFTVFSALLCTWALTFSLGGERLFGPVWDQLVMYN 138

Query: 130 LADKLGLTGWS 140
           LAD+LGLT W+
Sbjct: 139 LADRLGLTAWN 148

The following BLAST results are available for this feature:

BLAST of ClCG02G000500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PEN2_ARATH	2.4e-50	70.50	Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2...	[more]
PEN2_BOVIN	8.6e-08	35.48	Gamma-secretase subunit PEN-2 OS=Bos taurus GN=PSENEN PE=3 SV=1	[more]
PEN2_HUMAN	1.9e-07	35.48	Gamma-secretase subunit PEN-2 OS=Homo sapiens GN=PSENEN PE=1 SV=1	[more]
PEN2_MOUSE	3.3e-07	35.48	Gamma-secretase subunit PEN-2 OS=Mus musculus GN=Psenen PE=1 SV=1	[more]
PEN2_RAT	4.2e-07	34.41	Gamma-secretase subunit PEN-2 OS=Rattus norvegicus GN=Psenen PE=3 SV=1	[more]

BLAST of ClCG02G000500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK38_CUCSA	4.8e-66	89.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302290 PE=4 SV=1	[more]
A0A0B2PPM2_GLYSO	2.9e-55	78.57	Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_011887 PE=4 SV...	[more]
I1KBJ6_SOYBN	2.9e-55	78.57	Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1	[more]
I1JY18_SOYBN	3.8e-55	75.69	Uncharacterized protein OS=Glycine max GN=GLYMA_04G212600 PE=4 SV=1	[more]
A0A0B2RGU5_GLYSO	9.4e-54	75.91	Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_012798 PE=4 SV...	[more]

BLAST of ClCG02G000500 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09310.1	1.3e-51	70.50	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 sub...	[more]

BLAST of ClCG02G000500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121942\|ref\|XP_008460893.1\|	1.6e-59	73.65	PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo]	[more]
gi\|955324463\|ref\|XP_014631956.1\|	4.2e-55	78.57	PREDICTED: probable gamma-secretase subunit PEN-2 [Glycine max]	[more]
gi\|571451607\|ref\|XP_006578788.1\|	5.5e-55	75.69	PREDICTED: probable gamma-secretase subunit PEN-2 isoform X1 [Glycine max]	[more]
gi\|955317357\|ref\|XP_014630358.1\|	1.3e-53	75.91	PREDICTED: probable gamma-secretase subunit PEN-2 isoform X2 [Glycine max]	[more]
gi\|1021582755\|ref\|XP_016180776.1\|	1.8e-53	77.86	PREDICTED: probable gamma-secretase subunit PEN-2 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019379	Gamma_Secretase_Asp_P_PEN2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:1990570	GDP-mannose transmembrane transport
cellular_component	GO:0005798	Golgi-associated vesicle
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0070765	gamma-secretase complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005458	GDP-mannose transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G000500.1	ClCG02G000500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019379	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	PFAM	PF10251	PEN-2	coord: 43..129 score: 4.6
None	No IPR available	PANTHER	PTHR16318	GAMMA-SECRETASE SUBUNIT PEN-2	coord: 6..138 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G000500	Csa2G302290	Cucumber (Chinese Long) v2	cuwcgB124
ClCG02G000500	MELO3C023238	Melon (DHL92) v3.5.1	mewcgB091
ClCG02G000500	Cla007814	Watermelon (97103) v1	wcgwmB206
ClCG02G000500	Cla97C02G026740	Watermelon (97103) v2	wcgwmbB138
ClCG02G000500	CSPI02G15770	Wild cucumber (PI 183967)	cpiwcgB130
ClCG02G000500	Cucsa.249870	Cucumber (Gy14) v1	cgywcgB440
ClCG02G000500	CmaCh20G010610	Cucurbita maxima (Rimu)	cmawcgB482
ClCG02G000500	CmoCh20G010690	Cucurbita moschata (Rifu)	cmowcgB480
ClCG02G000500	Lsi10G007320	Bottle gourd (USVL1VR-Ls)	lsiwcgB056
ClCG02G000500	CsGy2G015760	Cucumber (Gy14) v2	cgybwcgB121
ClCG02G000500	MELO3C023238.2	Melon (DHL92) v3.6.1	medwcgB089
ClCG02G000500	Carg24316	Silver-seed gourd	carwcgB0694
ClCG02G000500	CsaV3_2G018330	Cucumber (Chinese Long) v3	cucwcgB139

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G000500	Wax gourd	wcgwgoB303
ClCG02G000500	Cucurbita maxima (Rimu)	cmawcgB544
ClCG02G000500	Cucurbita moschata (Rifu)	cmowcgB540
ClCG02G000500	Cucurbita pepo (Zucchini)	cpewcgB268
ClCG02G000500	Cucurbita pepo (Zucchini)	cpewcgB274
ClCG02G000500	Cucurbita pepo (Zucchini)	cpewcgB647
ClCG02G000500	Silver-seed gourd	carwcgB1030