Cucsa.249870 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.249870
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	GDP-mannose transporter, putative
Location	scaffold02219 : 13708 .. 17296 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTAAAATTGAGTAAAAGAGAAAACGAGGAAGGAACGATTTCTCATTCGAACTCCTCTCGCAATGGAGACCTTGCAGAATCCAAACGCAAACACCAATTCCAATCCAAATACCATATCTTCCCCAATTCGTGTGTTATGGCCTACCATCGATGGCTCTCTGGGTTTGTCGGAGGAAGAATCGGTGAGCTATGCTCGTAGGTTCTACAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTTCGATCCCGCTCGTTTCCTCGCATCCGACCCTGTGAGTTTTCCTCTCTTAACTTCTACTTTCAATTATTTCTGAAATTTTCACACTCATTGCTGTTCAAAGAAAAATATGATTAGGATCCTATTGTTGGATTTATCATACCTCAATATTCATGAGCATCAACAATTATATTTTAACTTCATTTTGCTTCACTGGTTATGTTTTAATGTGTGGTAGGCAATAACTCAAATTATTTTGTACAGAAATACATGACGCTATTGTAATGTAGATATTTGTGTTAGAAAACCCGACGCCCATCGGTCAATCCTTGTTCATCTGTTGTTTTTTCCGTAGGCTTGGTTTGTAAATACTAAGCCTGTTTGTTTGTGCAAATATCCTACCTTTTTAATTATTCCTTCTCATTGTTGTTTGCTTGGTCGTGGCGACTACATTATTGTTTTGAGTTTGATAGCTTTTATAATAATACTTTAAGGATGATACCTTGGTACTTCTCATAATTTGATGAATTAAATGGATAGAAGATCAGTAATCGTGTTCAAATTCAATAAATTGAGCCTTAAGAATTTGTTGTTCTTTTCCTTATGCTTGGTCGGTAGATACTAGAAGTTCTAACCTGTTTATTTGTGCAAATACCCTGACTGTTTTATGTTCTACAAAGGACAGACATATATAGATTGGGTACATCAAATGGGGATTGGAGGAATTTGAACCTTTGATCCCAAGTAAGGTAGCACACTCTAATTACTATTGGTCTAGGCTCACTTTAGTCAAAGTGCTAATGCTTTTGAAGGAAGGTAAAATTTATTGGCTCTTACGCTCCAAGTATCACATTTGTAAATAAGCTTTTGATTGTTTGTTGAAGTTGTAGTTCAATTGAGCTTTATTATGCATATCCCGTCTTCTTATGATTCTTTTTGTGAAAATTTTGGTCAAGATTCTTGCATGTTGTCTGCCAAGTATGCAGCAATTTAAACTTTTGGCCTCAGATTATTTGTCATAGTAGTTGGTCCTTTCAACTTCATTTGGCATATCCTCTTTTTGGGAATTATGCGTGTGAACTTTGTTATGCATTTATTTTATGCACCTCGAGCTGTGTATACACGTCTATATGTACAAATTTAATCATAAACCAACTAGGAAAATTAGGATGGTTATGTATATAAGAAGGTTGGGTCTTGTGTGTTTGCATGCATATGGACGAGAAATGCTCAAAGGGGGACATTCCATGGTTGTTTACTATACATTGAATGCATTATCTCTATCTTTACGTATCTTCTTCGTCGTATGAGTATTGATTGTTTGGAGTGGAGATACTCTCCAAAACCCGTGGTTCAAGCCCACGGAAAATAGGAGTGGCTTGGTTTTGTGTGTTGTTGCTAATTTAGTTAATAAGGGTGGCCTATCTTGAATTGCATGCGTATATATCAATGAATTTGATTCAAAAATGAAGGTTGGTCGGTTGTCTTTTTTTGATAAGTGTATAATAGGGGTGATTAAACTTAGTTATTATGTACTTGTTCTTACCATTCAATTGAAACATCCATGCTAGCTACACAGAACCTTGTTAGTAATAATTAATAAGTAAAATTGTTTTATAGTTTTATTTATAGTTTACTTTAACAACGACTACTATAATTTTAATATAACAATGAATTTATTTGAGATGAATAGTGTGTATGCTTCAAAGCTTTTCAGTCGGTCATTCTGATAAGATCAATAATTCTGAGGATACTCCTTTTCCAAGACCATTAATCATTGGTAACACAAATAGAATTCTATATTTATTTGCAAAAAAATCGTAGAAGTTCCACATGTTTTATAAAGATGAGTTGTTTCTTTGGGTTTGTTTATTATGAAAAGTTTGACACTAGATAAAATCCAGAATTTTGTATCATCTCTCTCTGAATGGCTATCCCATGAAATTTTTAGGATGAGATCGCGTCCATAGTATCAATGAGGAGACGGTACTGAGGACTCGTTCGTTCAAATGCTATAATAGGTTACAACTTCTGAAGGAAGTCAGTCAACATATTTTCAGTCATAACTTCTCGATCTTTAGTCAAGAGTACCGAAGAATTAATGAGGGTATAACTGGGCCCAGGAGTGAAGTTGAGGACTTACGAGTTTCTGTCTTCCTACCTTTTATGGATGGTGTTCCTTACATACAGATATTATGATTGATTCTCATCTTTTATTCAAATAACTTATGGTCTTTTCATTTTTTTTGTAATCTCCTTGATTTTTTTGGGAGATGGTCAGATATCTTGTCAAGTTCCCATAACTTTAGGCTATCATAATTCTTTCCTGGAAATTTTGGGTATGTATTTCTGTTTATAGTTATTCCTAGAACCAGGTGTGGTAGAATATTAATTTTTATTTAATAGACATTTACTTGAGCTGTTTTTCACATTAACTACTTTTAGGGTCAGTCCAATTACCTAACAATTTGAAATTGTTGTTTCTTTAGATATTGTTGGCTCAGCTATCGGCTTTGGTGTTTTCATGGCCATTATTTCGTCTTGGGCATTAACATTTTCCATTGGAGGAGAACGCCTGTTTGGACCTGTTTGGGATAAACTAGTGATGTACAATCTTGCTGACAAAGTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCCTCCCTTCGGCAACCAACTTCAACCTTCTTCTATATTTCAAAATTTGTAACTCTTGACGGTCATTGTTTTCTTGAAAGATCAAAGTTGAAGCTTTTGGTTTCCCTTCTTCAAGTGCTCCAATTGTCGAACATGAACATTTGCATTACCCATGTTGATTCATGTTAATAGTTGATGCACAAGTTTGAACCGGGTCTCCCTTCAACTGCGAACTAAGATTTGTGGATAAAAATCTAAACCGGTTCTCTTGAATTCTTCTTTGCTTTCTTTTTGTCCCACTTTCAATACTATAAGTCGTGCTCTTTTCTGGTTCCCCTACTTCAGAACATCCATTTTGAAGGTGGAATACATCTGGAAGCAAGTTAGAAACTCCCTTAAAATTCTTAGGGGATGGTAGTGTACAGTGATCAACAATCCCCAAAAGAAAGGTATGATTATTGTATACTGTAGCACTCCTTGTTATGGATATATTAGGATAACTAGTACGGTTGGTAAAAGCGTATTTTAGTAAATATAGTTTTCTTTAGAACTTTTAGTTATAAATTAGAGGGAGTGTGGTTGAGAGAATTTTTCTGTGGGATTTTCTATCGAGAGGGCTATTAGGGAGAGGCTGGCTCTCTTGAAAGGCTAGATTATCTTGTTACTCTTCCTATTGATATTACAACAAATTTTCATATATTTC

mRNA sequence

GAAGTAAAATTGAGTAAAAGAGAAAACGAGGAAGGAACGATTTCTCATTCGAACTCCTCTCGCAATGGAGACCTTGCAGAATCCAAACGCAAACACCAATTCCAATCCAAATACCATATCTTCCCCAATTCGTGTGTTATGGCCTACCATCGATGGCTCTCTGGGTTTGTCGGAGGAAGAATCGGTGAGCTATGCTCGTAGGTTCTACAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTTCGATCCCGCTCGTTTCCTCGCATCCGACCCTATATTGTTGGCTCAGCTATCGGCTTTGGTGTTTTCATGGCCATTATTTCGTCTTGGGCATTAACATTTTCCATTGGAGGAGAACGCCTGTTTGGACCTGTTTGGGATAAACTAGTGATGTACAATCTTGCTGACAAAGTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCCTCCCTTCGGCAACCAACTTCAACCTTCTTCTATATTTCAAAATTTGTAACTCTTGACGGTCATTGTTTTCTTGAAAGATCAAAGTTGAAGCTTTTGGTTTCCCTTCTTCAAGTGCTCCAATTGTCGAACATGAACATTTGCATTACCCATGTTGATTCATGTTAATAGTTGATGCACAAGTTTGAACCGGGTCTCCCTTCAACTGCGAACTAAGATTTGTGGATAAAAATCTAAACCGGTTCTCTTGAATTCTTCTTTGCTTTCTTTTTGTCCCACTTTCAATACTATAAGTCGTGCTCTTTTCTGGTTCCCCTACTTCAGAACATCCATTTTGAAGGTGGAATACATCTGGAAGCAAGTTAGAAACTCCCTTAAAATTCTTAGGGGATGGTAGTGTACAGTGATCAACAATCCCCAAAAGAAAGGTATGATTATTGTATACTGTAGCACTCCTTGTTATggatatattaggataactagtacggttggtaaaagcgtattttagtaaatatagttttctttagaacttttagttataaattagagggagtgtggttgagagaatttttctgtgggattttctatcgagagggctattagggagaggctggctctcttgaaaggctagattatcttgttactcttcctattgatattacaacaaattttcatatatttc

Coding sequence (CDS)

ATGGAGACCTTGCAGAATCCAAACGCAAACACCAATTCCAATCCAAATACCATATCTTCCCCAATTCGTGTGTTATGGCCTACCATCGATGGCTCTCTGGGTTTGTCGGAGGAAGAATCGGTGAGCTATGCTCGTAGGTTCTACAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTTCGATCCCGCTCGTTTCCTCGCATCCGACCCTATATTGTTGGCTCAGCTATCGGCTTTGGTGTTTTCATGGCCATTATTTCGTCTTGGGCATTAACATTTTCCATTGGAGGAGAACGCCTGTTTGGACCTGTTTGGGATAAACTAGTGATGTACAATCTTGCTGACAAAGTAGGATTAACAGGTTGGAGCTAG

Protein sequence

METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRSRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVMYNLADKVGLTGWS*

Homology

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BLAST of Cucsa.249870 vs. Swiss-Prot
Match: PEN2_ARATH (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.6e-48
Identity = 92/134 (68.66%), Postives = 113/134 (84.33%), Query Frame = 1


Query: 1   METLQNPNANTNSNPNTISSPIRV--LWPTIDGSLGLSEEESVSYARRFYKFGFALLPFL 60
           +  ++N N N N NPN +S+ I    +WPTIDG LGL+EE SV YARRFYKFGFALLP+L
Sbjct: 11  LNPIRNRNPNPNPNPNPLSTIISSAQVWPTIDGPLGLTEEASVDYARRFYKFGFALLPWL 70

Query: 61  WAVNCFYFWPVLR-SRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDK 120
           W VNCFYFWPVLR SR+FP+IR Y+V SAIGF VF A++S+WALTFSIGGE+LFGP++DK
Sbjct: 71  WFVNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGEQLFGPLYDK 130

Query: 121 LVMYNLADKVGLTG 132
           LVMYN+AD++GL+G
Sbjct: 131 LVMYNVADRLGLSG 144

[Close]

BLAST of Cucsa.249870 vs. Swiss-Prot
Match: PEN2_BOVIN (Gamma-secretase subunit PEN-2 OS=Bos taurus GN=PSENEN PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-08
Identity = 33/93 (35.48%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 35  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSRSFPRIRPYIVGSAIG 94
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P    +S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFIVPAYTEQS--QIKGYVWRSAVG 65

Query: 95  FGVFMAIISSWALTFSIGGERLFGPVWDKLVMY 122
           F +++ ++S+W   F I     + P W  L  Y
Sbjct: 66  FFLWVIVLSTWITIFQI-----YRPRWGALGDY 91

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BLAST of Cucsa.249870 vs. Swiss-Prot
Match: PEN2_HUMAN (Gamma-secretase subunit PEN-2 OS=Homo sapiens GN=PSENEN PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.3e-08
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 35  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSRSFPRIRPYIVGSAIG 94
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P    +S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQS--QIKGYVWRSAVG 65

Query: 95  FGVFMAIISSWALTFSIGGERLFGPVWDKLVMY 122
           F  ++ +++SW   F I     + P W  L  Y
Sbjct: 66  FLFWVIVLTSWITIFQI-----YRPRWGALGDY 91

[Close]

BLAST of Cucsa.249870 vs. Swiss-Prot
Match: PEN2_MOUSE (Gamma-secretase subunit PEN-2 OS=Mus musculus GN=Psenen PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 35  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSRSFPRIRPYIVGSAIG 94
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P    +S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLAPAYTEQS--QIKGYVWRSAVG 65

Query: 95  FGVFMAIISSWALTFSIGGERLFGPVWDKLVMY 122
           F  ++ I+++W   F I     + P W  L  Y
Sbjct: 66  FLFWVIILATWITIFQI-----YRPRWGALGDY 91

[Close]

BLAST of Cucsa.249870 vs. Swiss-Prot
Match: PEN2_RAT (Gamma-secretase subunit PEN-2 OS=Rattus norvegicus GN=Psenen PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-07
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 35  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSRSFPRIRPYIVGSAIG 94
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P    +S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFKEAFFAPAYTEQS--QIKGYVWRSAVG 65

Query: 95  FGVFMAIISSWALTFSIGGERLFGPVWDKLVMY 122
           F  ++ ++++W   F I     + P W  L  Y
Sbjct: 66  FLFWVIVLTTWITIFQI-----YRPRWGALGDY 91

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BLAST of Cucsa.249870 vs. TrEMBL
Match: A0A0A0LK38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302290 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.5e-72
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVM 120
           VNCFYFWPVLRSRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVM
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVM 120

Query: 121 YNLADKVGLTGWS 134
           YNLADKVGLTGWS
Sbjct: 121 YNLADKVGLTGWS 133

[Close]

BLAST of Cucsa.249870 vs. TrEMBL
Match: A0A0B2PPM2_GLYSO (Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_011887 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.0e-52
Identity = 102/129 (79.07%), Postives = 113/129 (87.60%), Query Frame = 1


Query: 6   NPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFY 65
           NPN N N N N+++S + V WPTIDG LGLSEEESV YARRFYKFGFALLP LWAVNCFY
Sbjct: 10  NPNPNPNRN-NSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFALLPLLWAVNCFY 69

Query: 66  FWPVLR-SRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVMYNLA 125
           FWP LR S SFPRIRPY+VGSAIGF VF  ++SSWALTF+IGGERLFGPVWD+LVMYNLA
Sbjct: 70  FWPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGPVWDQLVMYNLA 129

Query: 126 DKVGLTGWS 134
           D++GLTGWS
Sbjct: 130 DRLGLTGWS 136

[Close]

BLAST of Cucsa.249870 vs. TrEMBL
Match: I1KBJ6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.0e-52
Identity = 102/129 (79.07%), Postives = 113/129 (87.60%), Query Frame = 1


Query: 6   NPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFY 65
           NPN N N N N+++S + V WPTIDG LGLSEEESV YARRFYKFGFALLP LWAVNCFY
Sbjct: 10  NPNPNPNRN-NSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFALLPLLWAVNCFY 69

Query: 66  FWPVLR-SRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVMYNLA 125
           FWP LR S SFPRIRPY+VGSAIGF VF  ++SSWALTF+IGGERLFGPVWD+LVMYNLA
Sbjct: 70  FWPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGPVWDQLVMYNLA 129

Query: 126 DKVGLTGWS 134
           D++GLTGWS
Sbjct: 130 DRLGLTGWS 136

[Close]

BLAST of Cucsa.249870 vs. TrEMBL
Match: G7JBL2_MEDTR (GDP-mannose transporter, putative OS=Medicago truncatula GN=MTR_3g096320 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-52
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 1


Query: 1   METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           ME+ Q+   N N NPN ++  + V WPTIDG LGLSEEESV YARRFYKFGFALLP LWA
Sbjct: 1   MESSQSHTNNPNPNPNPLALSVPV-WPTIDGPLGLSEEESVKYARRFYKFGFALLPLLWA 60

Query: 61  VNCFYFWPVLR-SRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLV 120
           VNCFYFWPV+R S SFPRIRPY+VGSA+GF VF  ++ SWALTFSIGGERLFGPVWD+LV
Sbjct: 61  VNCFYFWPVIRHSHSFPRIRPYVVGSAVGFTVFATLLCSWALTFSIGGERLFGPVWDQLV 120

Query: 121 MYNLADKVGLTGWS 134
           MYNLAD+ GLTGWS
Sbjct: 121 MYNLADRFGLTGWS 133

[Close]

BLAST of Cucsa.249870 vs. TrEMBL
Match: A0A061DKH3_THECC (GDP-mannose transporter, putative OS=Theobroma cacao GN=TCM_001495 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.9e-52
Identity = 99/129 (76.74%), Postives = 116/129 (89.92%), Query Frame = 1


Query: 6   NPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFY 65
           NPN +  +N N+I S   V WPTIDG LGLSEEES+SYARRFYKFG+ALLP+LWAVNCFY
Sbjct: 15  NPNNDFTNNGNSILSSTPV-WPTIDGPLGLSEEESLSYARRFYKFGYALLPWLWAVNCFY 74

Query: 66  FWPVLR-SRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVMYNLA 125
           FWPVLR SRSFPRIRPY++GSA+GF VF A++SSWALTF+IGGERLFGP+WD+LVMYN+A
Sbjct: 75  FWPVLRHSRSFPRIRPYVLGSAVGFAVFSALLSSWALTFAIGGERLFGPIWDQLVMYNVA 134

Query: 126 DKVGLTGWS 134
           D++GLTGWS
Sbjct: 135 DQLGLTGWS 142

[Close]

BLAST of Cucsa.249870 vs. TAIR10
Match: AT5G09310.1 (AT5G09310.1 Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379))

HSP 1 Score: 193.4 bits (490), Expect = 9.3e-50
Identity = 92/134 (68.66%), Postives = 113/134 (84.33%), Query Frame = 1


Query: 1   METLQNPNANTNSNPNTISSPIRV--LWPTIDGSLGLSEEESVSYARRFYKFGFALLPFL 60
           +  ++N N N N NPN +S+ I    +WPTIDG LGL+EE SV YARRFYKFGFALLP+L
Sbjct: 11  LNPIRNRNPNPNPNPNPLSTIISSAQVWPTIDGPLGLTEEASVDYARRFYKFGFALLPWL 70

Query: 61  WAVNCFYFWPVLR-SRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDK 120
           W VNCFYFWPVLR SR+FP+IR Y+V SAIGF VF A++S+WALTFSIGGE+LFGP++DK
Sbjct: 71  WFVNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGEQLFGPLYDK 130

Query: 121 LVMYNLADKVGLTG 132
           LVMYN+AD++GL+G
Sbjct: 131 LVMYNVADRLGLSG 144

[Close]

BLAST of Cucsa.249870 vs. NCBI nr
Match: gi|778670219|ref|XP_011649406.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 3.6e-72
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVM 120
           VNCFYFWPVLRSRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVM
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVM 120

Query: 121 YNLADKVGLTGWS 134
           YNLADKVGLTGWS
Sbjct: 121 YNLADKVGLTGWS 133

[Close]

BLAST of Cucsa.249870 vs. NCBI nr
Match: gi|659121942|ref|XP_008460893.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 6.9e-63
Identity = 126/161 (78.26%), Postives = 128/161 (79.50%), Query Frame = 1


Query: 1   METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           MET  NPNANTNSNPNTI+SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPY----------------------------IVGSAIGFGVF 120
           VNCFYFWPVLRSRSFPRIRP                             IVGSAIGFGV 
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120

Query: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKVGLTGWS 134
           MAIISSWALTFSIGGERLFGPVWDKLVMYNLADK+GLTGWS
Sbjct: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 161

[Close]

BLAST of Cucsa.249870 vs. NCBI nr
Match: gi|1021582755|ref|XP_016180776.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Arachis ipaensis])

HSP 1 Score: 215.7 bits (548), Expect = 4.9e-53
Identity = 102/130 (78.46%), Postives = 115/130 (88.46%), Query Frame = 1


Query: 8   NANTNSNPNTISSPIRV---LWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCF 67
           N+++N NPN   SPIR    +WPTIDG LGLSEEESVSYARRFYKFGFALLP LWAVNCF
Sbjct: 19  NSSSNPNPNPDPSPIRSTGGIWPTIDGPLGLSEEESVSYARRFYKFGFALLPLLWAVNCF 78

Query: 68  YFWPVLR-SRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVMYNL 127
           YFWPVLR SRSFPRIRPYIVGSA+GF VF A++ +WALTFS+GGERLFGPVWD+LVMYNL
Sbjct: 79  YFWPVLRHSRSFPRIRPYIVGSAVGFTVFSALLCTWALTFSLGGERLFGPVWDQLVMYNL 138

Query: 128 ADKVGLTGWS 134
           AD++GLT W+
Sbjct: 139 ADRLGLTAWN 148

[Close]

BLAST of Cucsa.249870 vs. NCBI nr
Match: gi|828315352|ref|XP_012571901.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cicer arietinum])

HSP 1 Score: 214.9 bits (546), Expect = 8.4e-53
Identity = 106/138 (76.81%), Postives = 114/138 (82.61%), Query Frame = 1


Query: 1   METLQ----NPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           M+ LQ    NPN N NSNP   S P   LWPTIDG LGLSEEESV YARRFYKFGFALLP
Sbjct: 1   MDALQSHTNNPNLNLNSNPLASSVP---LWPTIDGPLGLSEEESVKYARRFYKFGFALLP 60

Query: 61  FLWAVNCFYFWPVLR-SRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVW 120
            LWAVNCFYFWPV+R SRSFP IRPY+VGSAIGF +  A++ SWALTFSIGGERLFGPVW
Sbjct: 61  LLWAVNCFYFWPVIRHSRSFPTIRPYVVGSAIGFTISAALLCSWALTFSIGGERLFGPVW 120

Query: 121 DKLVMYNLADKVGLTGWS 134
           D+LVMYNLAD+ GLTGWS
Sbjct: 121 DQLVMYNLADRFGLTGWS 135

[Close]

BLAST of Cucsa.249870 vs. NCBI nr
Match: gi|955324463|ref|XP_014631956.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Glycine max])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 102/129 (79.07%), Postives = 113/129 (87.60%), Query Frame = 1


Query: 6   NPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFY 65
           NPN N N N N+++S + V WPTIDG LGLSEEESV YARRFYKFGFALLP LWAVNCFY
Sbjct: 10  NPNPNPNRN-NSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFALLPLLWAVNCFY 69

Query: 66  FWPVLR-SRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWDKLVMYNLA 125
           FWP LR S SFPRIRPY+VGSAIGF VF  ++SSWALTF+IGGERLFGPVWD+LVMYNLA
Sbjct: 70  FWPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGPVWDQLVMYNLA 129

Query: 126 DKVGLTGWS 134
           D++GLTGWS
Sbjct: 130 DRLGLTGWS 136

The following BLAST results are available for this feature:

BLAST of Cucsa.249870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PEN2_ARATH	1.6e-48	68.66	Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2...	[more]
PEN2_BOVIN	3.7e-08	35.48	Gamma-secretase subunit PEN-2 OS=Bos taurus GN=PSENEN PE=3 SV=1	[more]
PEN2_HUMAN	8.3e-08	35.48	Gamma-secretase subunit PEN-2 OS=Homo sapiens GN=PSENEN PE=1 SV=1	[more]
PEN2_MOUSE	1.4e-07	35.48	Gamma-secretase subunit PEN-2 OS=Mus musculus GN=Psenen PE=1 SV=1	[more]
PEN2_RAT	1.8e-07	34.41	Gamma-secretase subunit PEN-2 OS=Rattus norvegicus GN=Psenen PE=3 SV=1	[more]

BLAST of Cucsa.249870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK38_CUCSA	2.5e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302290 PE=4 SV=1	[more]
A0A0B2PPM2_GLYSO	1.0e-52	79.07	Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_011887 PE=4 SV...	[more]
I1KBJ6_SOYBN	1.0e-52	79.07	Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1	[more]
G7JBL2_MEDTR	1.7e-52	75.37	GDP-mannose transporter, putative OS=Medicago truncatula GN=MTR_3g096320 PE=2 SV...	[more]
A0A061DKH3_THECC	2.9e-52	76.74	GDP-mannose transporter, putative OS=Theobroma cacao GN=TCM_001495 PE=4 SV=1	[more]

BLAST of Cucsa.249870 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09310.1	9.3e-50	68.66	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 sub...	[more]

BLAST of Cucsa.249870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778670219\|ref\|XP_011649406.1\|	3.6e-72	100.00	PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis sativus]	[more]
gi\|659121942\|ref\|XP_008460893.1\|	6.9e-63	78.26	PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo]	[more]
gi\|1021582755\|ref\|XP_016180776.1\|	4.9e-53	78.46	PREDICTED: probable gamma-secretase subunit PEN-2 [Arachis ipaensis]	[more]
gi\|828315352\|ref\|XP_012571901.1\|	8.4e-53	76.81	PREDICTED: probable gamma-secretase subunit PEN-2 [Cicer arietinum]	[more]
gi\|955324463\|ref\|XP_014631956.1\|	1.4e-52	79.07	PREDICTED: probable gamma-secretase subunit PEN-2 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019379	Gamma_Secretase_Asp_P_PEN2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005798	Golgi-associated vesicle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.249870.1	Cucsa.249870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019379	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	PFAM	PF10251	PEN-2	coord: 37..123 score: 1.5
None	No IPR available	PANTHER	PTHR16318	GAMMA-SECRETASE SUBUNIT PEN-2	coord: 1..132 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.249870	Cla007814	Watermelon (97103) v1	cgywmB470
Cucsa.249870	Csa2G302290	Cucumber (Chinese Long) v2	cgycuB358
Cucsa.249870	MELO3C023238	Melon (DHL92) v3.5.1	cgymeB424
Cucsa.249870	ClCG02G000500	Watermelon (Charleston Gray)	cgywcgB440
Cucsa.249870	CSPI02G15770	Wild cucumber (PI 183967)	cgycpiB374
Cucsa.249870	CmaCh20G010610	Cucurbita maxima (Rimu)	cgycmaB0696
Cucsa.249870	CmoCh20G010690	Cucurbita moschata (Rifu)	cgycmoB0696
Cucsa.249870	Lsi10G007320	Bottle gourd (USVL1VR-Ls)	cgylsiB409
Cucsa.249870	MELO3C023238.2	Melon (DHL92) v3.6.1	cgymedB418
Cucsa.249870	CsaV3_2G018330	Cucumber (Chinese Long) v3	cgycucB380
Cucsa.249870	Cla97C02G026740	Watermelon (97103) v2	cgywmbB442
Cucsa.249870	Carg24316	Silver-seed gourd	carcgyB0807

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.249870	Wax gourd	cgywgoB501
Cucsa.249870	Cucurbita maxima (Rimu)	cgycmaB0698
Cucsa.249870	Cucurbita moschata (Rifu)	cgycmoB0698
Cucsa.249870	Cucurbita pepo (Zucchini)	cgycpeB0665
Cucsa.249870	Cucurbita pepo (Zucchini)	cgycpeB0666
Cucsa.249870	Silver-seed gourd	carcgyB1175