CmaCh20G010610 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G010610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Probable gamma-secretase subunit PEN-2
Location	Cma_Chr20 : 7999324 .. 8003743 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGCCTAAAACTTCGGTTGGTCTTTGTGTTCAGAGTCATTGAAACTTGATTGCAATGGAGAACTCGCAGAATTCGAACAGCAATCTAAACCCTAATCCGATTCGCATCCAGAATCTTGTATCGTCGCCGATTGCTGTGTTATGGCCGACAATTGATGGCTCACTCGGGCTGTCGGAGGAAGAATCGGTGAGCTATGCCCGCAGATTCTATAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCAGTTCTTCGCTCTCGCTCATTTCCTCGCATTCGTCCCTGTGAGTTTGCCTCTCTCTGTTTAACTTCGATGCACGCGTCTCTACTTTCAGTCATTTTCTTAATTTACACTTAACCGGGGATCTTCATAGTAAGAGCATTCATTCTTCGAATTCAGATGTATTTTGTAGCCCTAAACAAGGAAAGCTAGTGCTGGATATCATGTCCTGTAAGATAGGACTTGAAAGATTGTCCCAGGTCAATATGAATATAAAAAATGAACTTAAAATAATCCTCAGAATCCGTGGTTGAGGATTGTTGAGAGGGAGTCTTACATTGGCTAGTTTAAGGAATGATCATGAGTTTATAAGTAAGGAATACATCTTCATTGGTATGAGACCTTTTGGGGAAGCCCAAAAGAAAACCATTAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTGGAGATTCGTGATTCCTAACATCAGTGAGGGAACTAAACTAGCTTACTTGGTGTCTAGCCTTAGAACCAGCTATTGATCTATATGAACGGTAAGAAACTAGCCGCTTGAAAAGGGACATTGGACTACTATGAATAACAGAGACTTTCTTTTATCCTTTATCCCTTGTCTAGAAAGGTTATTGGCTCGAAGAAAGAAGCACTCGAACGTGATTCACTTCTAACATTTTTCCCTTACCGGTAAGTAAACACAATGGTGTAAAGGGATTACCCCGGAAGGAGAACATGAATAAGACCCTATTGTTGGATTTATCTTACCTCAATATTCTAATGATGGTAGCATTACGGGTTATTGGTTGTTGTTCTGGTTTTTGAGTTATATTTTAACGCGATTCTGTTTCACTAGTTATGCTTCAATGTTTGGAAGCCCAAGAATGAAACTATTTTGTGGAGAAATGCATGATGCCGTTGTGATGTAGATATTTGTATTACAAAACTGAGTGCCCATCGATTTATCCTTGTCCATGCGTTGTTCTTTTTCATAGGCTTGGTCAGTGGATGCAAGGAGTTCTAAGCTGTTTATTTGTGCCATTTTGATAATTCCCCTTCTTTCTCTTTGTAGTTTGCTTCATTATATTGGGACATGGTGATTCATGTTATACATTATTGTCTTGAGTTTATAGCTTTTGCAATAATACTTTAAGCAATGATACATTGATACTCTTCATAATTTACTGGAAAAAAGTGGATAAAAAAGATTGGCAATCGTGTTCTAGTTCACTAAATTGAGCCTTAAGAATTTGGAGGTACTCTCTGGTTTCCTAATGTCAGCCTTCCATTGAAGTGACAAAGATTTGCATTTTTTTTTTTTTATGACAAAGATTCATTGATACTCTTCATAATTTACTGGAAAAAAGTGGATAAAAAAGATTAGTAATCGTGTTCTAGTTCGCTAAATTGAGCCTTATGAATTTGGAGGTACTCTCTGGTTTCCTAATGTCAGCCTTCCATTGAAGTGACAAGGATTTGCATTTTTTTATGCTTATAATTAGCACCTCATGTCCTACAGAGTACAAACACTTTTGAAGGAAATTAAAAATGCTTGGCTCTTGCGCTATACAACATTTGTAAATAAGCCTTTGATTGCTTGTCAAAGTTGCAATTCATTTGAGCTTCATTATGCATATCTTTTTTCTTTCTTTAATTAAAAAATGTAGTCAAGATTTTTGGTTCTTGCTTCCAAGTGTACAACAATTTAATGTTTTGGCCTCAGATTATTTGTCATGGTCGCAGTTCATATCAACTCATTTGGCACATCTTTTTTTCTTTTTTTGAGAAAAACTGTGTATGAACTTCCTTATGCATCCATCTGGTCTACCTAGGGGCATGTGTACACTGGTTTACTAGGGTATGTACGAGTTTAATCATAAACCAGCAAGGAAAATTAGGGTGGATTCTTTTGATGGTTTTCTCGGTTTCGAATCATTAAGAAGGGTGGTTTTTGTGTATCCGCACTCGTGTGGATGAGAAACCCTTCTAAAGGGGCCAATTTATGGTGGTTTATTCTGCCTTTTCACGTATCTCCTTGATGGTAAGATTGTTTGGTGGTACTCTACAAGGCCCTTGGTTCATAATTAAGGAAATAAGGGTGCCTTTTTGTGTGTGTGTGTGTGTGTGTGTATGTGATAAGGGTAGTCTGGAGTGTAGGCGTATATTTGTATGAATAAATAAACTAACTATGGGAGCAAGGTTGGTTTTGTGTGCGTGTTGCAAAGTTGGTTTTTTGTCCGTGTATAATAGGGGTGGGTTCTTTTTTGAGATACTCTCCTAGGCCTGGGTTCAACCCACGAGCTTGAGAACTTAATAACCGGTGTTTTTTTTTTTTTTTGAGATACTCTCCGAGGCTTTGGGTTGAACACTCAGGCTCGAAAACTTAACGACCTATACACCTGGACTCTTTGGGATTAGTGGAGTGGGTCATGAATATGATACAAGAACCACCCAAACCCTGCCCCCCAAAGAAAAACTTGATTTCATTGTTTTCCTTTTCCGTCTATTTCATTACACTTATGATTCAAGGCACGAGCCTCAGTGATTAAAACCTTAAAAGCGATAATGTATTTGTTCTTAACTGTAGTTAAAATTATCTAATTCAATTTTAATTTTTATATTCATATTTGTATGTCCATGCTAGCTTACACACGCCTCAACTAATTTCAATTTAGGAAGGAAAATTGTTTCATAGTGGAATTTATAGTTGTACTGCTACAATGATACTATAATTGTAATACAATAATGAATCTATTTGAGATCAATGCTCTCTATACTGGAAGGCTTCTTCATTAAGTCACTCTGATACTGGAGTTTGCAAGATAAAATTTCTATTGCAAGACTGTTTATATCATTGATAAGATAGATTGAAGACCATATTTTTTTGCAACAAATTGTAGAAGTTGAACATGTCTAAGAAAGCTGAGTTCTTATTTTGGTTTGTTTACTATGAAAAGTATGACATTCTTGATAATGTTTATAATTTTGTATCGTCTCTCTAGGTATTTGAAATGGTTAGGATAGGATCAAAGCCATATGACAATCCACTTAACTTTAGCATGAGGATATGGTACAGTATTCTGGATCTTTTCAACCTATAGTGGTGCTTTCTGGCCAGCACTCAGGATTCCCTCATTCAAATTCTAAGAATAGGTCACGGCTTCAAAAGGAATTTGGTTAACATAGTTTCAATCACAAATTTTGGATCTCTAGTTAGAGTTCCTAGGAACTATTGAGGGTATAACTAGGCCTAGGAGTGAAATTGAGGACTTTGTAGTTTCACTAGCTTTCTAGATGGTGTTCCTTGCATAAGAATATTTACAATTAATTCTCATCTTTTCTAAATATACATAGCTGAGCTTTTATTTTTTTATCTTATATCTTTCGTCAAAATTTTCCTTACTTCGGCTATTACGAGTTTTTGTTATGAATTTTAACAAGGTATATTTTTAGTTACTCCTAGATCCACATTATGGTAGCGTATTCTTTTTTTTTTATATATATAATCTTAATAGAAATTTACTTTTATTATTTTTCCCATTATCTCGGTTTGGTACTTGATAAAGTTATCTAACGATTTGAAATTACTCTTCCTTTAGATATTGTTGGCTCAGCTATTGGTTTTGCTGTTTTCATGGCCATTATCTCGTCTTGGGCCTTGACATTTGCCATTGGAGGAGAACGCCTCTTTGGACCTGTTTGGGATAAACTAGTGATGTACAACCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCATTCCTTCAGCAACCAACTTCGAACTTGTTCTTGTATATTTTAAGATGTGTAACTCTCTACTGTCATTCTTTTCTTGAAATATCAAAGTTGAAGCTTTTAGTTTCACTTCTCTAAGTGCTTCAAGTGTCAAACATAAACATAGAAGGGATCTTATATCGAACATAATTGAAATGAACAATATCAGGTTAAACAAACCCATGGTTTAAAGAACACTTGAACTTTAACAAACCCATGGTCAAATGCACACGTTTTGAAACGGTTCTCCCTGCAGCTGCGTCGACAGAGTTCTGTGGATTGAATTCTAAACTGGTTATCTGAAATTCTCCTTTGCTTCCCTTTTCTCCCACTTTCAATACTATAAGCTGTGCTCTGTTTTCTGATTCCCTAC

mRNA sequence

ATTTTGCCTAAAACTTCGGTTGGTCTTTGTGTTCAGAGTCATTGAAACTTGATTGCAATGGAGAACTCGCAGAATTCGAACAGCAATCTAAACCCTAATCCGATTCGCATCCAGAATCTTGTATCGTCGCCGATTGCTGTGTTATGGCCGACAATTGATGGCTCACTCGGGCTGTCGGAGGAAGAATCGGTGAGCTATGCCCGCAGATTCTATAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCAGTTCTTCGCTCTCGCTCATTTCCTCGCATTCGTCCCTATATTGTTGGCTCAGCTATTGGTTTTGCTGTTTTCATGGCCATTATCTCGTCTTGGGCCTTGACATTTGCCATTGGAGGAGAACGCCTCTTTGGACCTGTTTGGGATAAACTAGTGATGTACAACCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCATTCCTTCAGCAACCAACTTCGAACTTGTTCTTGTATATTTTAAGATGTGTAACTCTCTACTGTCATTCTTTTCTTGAAATATCAAAGTTGAAGCTTTTAGTTTCACTTCTCTAAGTGCTTCAAGTGTCAAACATAAACATAGAAGGGATCTTATATCGAACATAATTGAAATGAACAATATCAGGTTAAACAAACCCATGGTTTAAAGAACACTTGAACTTTAACAAACCCATGGTCAAATGCACACGTTTTGAAACGGTTCTCCCTGCAGCTGCGTCGACAGAGTTCTGTGGATTGAATTCTAAACTGGTTATCTGAAATTCTCCTTTGCTTCCCTTTTCTCCCACTTTCAATACTATAAGCTGTGCTCTGTTTTCTGATTCCCTAC

Coding sequence (CDS)

ATGGAGAACTCGCAGAATTCGAACAGCAATCTAAACCCTAATCCGATTCGCATCCAGAATCTTGTATCGTCGCCGATTGCTGTGTTATGGCCGACAATTGATGGCTCACTCGGGCTGTCGGAGGAAGAATCGGTGAGCTATGCCCGCAGATTCTATAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCAGTTCTTCGCTCTCGCTCATTTCCTCGCATTCGTCCCTATATTGTTGGCTCAGCTATTGGTTTTGCTGTTTTCATGGCCATTATCTCGTCTTGGGCCTTGACATTTGCCATTGGAGGAGAACGCCTCTTTGGACCTGTTTGGGATAAACTAGTGATGTACAACCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAG

Protein sequence

MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRSRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS

Homology

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BLAST of CmaCh20G010610 vs. Swiss-Prot
Match: PEN2_ARATH (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 9.9e-49
Identity = 93/132 (70.45%), Postives = 114/132 (86.36%), Query Frame = 1


Query: 5   QNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 64
           +N N N NPNP  +  ++SS  A +WPTIDG LGL+EE SV YARRFYKFGFALLP+LW 
Sbjct: 15  RNRNPNPNPNPNPLSTIISS--AQVWPTIDGPLGLTEEASVDYARRFYKFGFALLPWLWF 74

Query: 65  VNCFYFWPVLR-SRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLV 124
           VNCFYFWPVLR SR+FP+IR Y+V SAIGF+VF A++S+WALTF+IGGE+LFGP++DKLV
Sbjct: 75  VNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGEQLFGPLYDKLV 134

Query: 125 MYNLADKLGLTG 136
           MYN+AD+LGL+G
Sbjct: 135 MYNVADRLGLSG 144

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BLAST of CmaCh20G010610 vs. Swiss-Prot
Match: PEN2_BOVIN (Gamma-secretase subunit PEN-2 OS=Bos taurus GN=PSENEN PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.5e-08
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 39  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSRSFPRIRPYIVGSAIG 98
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P    +S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFIVPAYTEQS--QIKGYVWRSAVG 65

Query: 99  FAVFMAIISSWALTFAIGGERLFGPVWDKLVMY 126
           F +++ ++S+W   F     +++ P W  L  Y
Sbjct: 66  FFLWVIVLSTWITIF-----QIYRPRWGALGDY 91

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BLAST of CmaCh20G010610 vs. Swiss-Prot
Match: PEN2_HUMAN (Gamma-secretase subunit PEN-2 OS=Homo sapiens GN=PSENEN PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-08
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 39  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSRSFPRIRPYIVGSAIG 98
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P    +S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQS--QIKGYVWRSAVG 65

Query: 99  FAVFMAIISSWALTFAIGGERLFGPVWDKLVMY 126
           F  ++ +++SW   F     +++ P W  L  Y
Sbjct: 66  FLFWVIVLTSWITIF-----QIYRPRWGALGDY 91

[Close]

BLAST of CmaCh20G010610 vs. Swiss-Prot
Match: PEN2_MOUSE (Gamma-secretase subunit PEN-2 OS=Mus musculus GN=Psenen PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 39  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSRSFPRIRPYIVGSAIG 98
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P    +S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLAPAYTEQS--QIKGYVWRSAVG 65

Query: 99  FAVFMAIISSWALTFAIGGERLFGPVWDKLVMY 126
           F  ++ I+++W   F     +++ P W  L  Y
Sbjct: 66  FLFWVIILATWITIF-----QIYRPRWGALGDY 91

[Close]

BLAST of CmaCh20G010610 vs. Swiss-Prot
Match: PEN2_RAT (Gamma-secretase subunit PEN-2 OS=Rattus norvegicus GN=Psenen PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 39  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLRSRSFPRIRPYIVGSAIG 98
           +S EE ++  R++Y  GFA LPFLW VN F+F+      P    +S  +I+ Y+  SA+G
Sbjct: 6   VSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFKEAFFAPAYTEQS--QIKGYVWRSAVG 65

Query: 99  FAVFMAIISSWALTFAIGGERLFGPVWDKLVMY 126
           F  ++ ++++W   F     +++ P W  L  Y
Sbjct: 66  FLFWVIVLTTWITIF-----QIYRPRWGALGDY 91

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BLAST of CmaCh20G010610 vs. TrEMBL
Match: A0A0A0LK38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302290 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.4e-63
Identity = 121/137 (88.32%), Postives = 125/137 (91.24%), Query Frame = 1


Query: 1   MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME  QN N+N N NP    N +SSPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLP
Sbjct: 1   METLQNPNANTNSNP----NTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60

Query: 61  FLWAVNCFYFWPVLRSRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWD 120
           FLWAVNCFYFWPVLRSRSFPRIRPYIVGSAIGF VFMAIISSWALTF+IGGERLFGPVWD
Sbjct: 61  FLWAVNCFYFWPVLRSRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWD 120

Query: 121 KLVMYNLADKLGLTGWS 138
           KLVMYNLADK+GLTGWS
Sbjct: 121 KLVMYNLADKVGLTGWS 133

[Close]

BLAST of CmaCh20G010610 vs. TrEMBL
Match: A0A0B2PPM2_GLYSO (Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_011887 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-54
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 1


Query: 1   MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME SQ ++ N NPNP R  N V+S + V WPTIDG LGLSEEESV YARRFYKFGFALLP
Sbjct: 1   MEASQGNHPNPNPNPNR-NNSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFALLP 60

Query: 61  FLWAVNCFYFWPVLR-SRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVW 120
            LWAVNCFYFWP LR S SFPRIRPY+VGSAIGFAVF  ++SSWALTFAIGGERLFGPVW
Sbjct: 61  LLWAVNCFYFWPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGPVW 120

Query: 121 DKLVMYNLADKLGLTGWS 138
           D+LVMYNLAD+LGLTGWS
Sbjct: 121 DQLVMYNLADRLGLTGWS 136

[Close]

BLAST of CmaCh20G010610 vs. TrEMBL
Match: I1KBJ6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-54
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 1


Query: 1   MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME SQ ++ N NPNP R  N V+S + V WPTIDG LGLSEEESV YARRFYKFGFALLP
Sbjct: 1   MEASQGNHPNPNPNPNR-NNSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFALLP 60

Query: 61  FLWAVNCFYFWPVLR-SRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVW 120
            LWAVNCFYFWP LR S SFPRIRPY+VGSAIGFAVF  ++SSWALTFAIGGERLFGPVW
Sbjct: 61  LLWAVNCFYFWPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGPVW 120

Query: 121 DKLVMYNLADKLGLTGWS 138
           D+LVMYNLAD+LGLTGWS
Sbjct: 121 DQLVMYNLADRLGLTGWS 136

[Close]

BLAST of CmaCh20G010610 vs. TrEMBL
Match: A0A151SSX1_CAJCA (Putative gamma-secretase subunit PEN-2 OS=Cajanus cajan GN=KK1_004232 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.6e-53
Identity = 108/138 (78.26%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 1   MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME S+++N N  PNPIR     S P   LWPTIDG LGLSEEESVSYARRFY FGFALLP
Sbjct: 1   MEASESNNPN--PNPIRNSLASSVP---LWPTIDGPLGLSEEESVSYARRFYNFGFALLP 60

Query: 61  FLWAVNCFYFWPVLR-SRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVW 120
            LWAVNCFYFWPVLR S SFPRIRPY++GSA+GFAVF  ++SSWALTFAIGGERLFGPVW
Sbjct: 61  LLWAVNCFYFWPVLRHSHSFPRIRPYVLGSAVGFAVFATLLSSWALTFAIGGERLFGPVW 120

Query: 121 DKLVMYNLADKLGLTGWS 138
           D+LVMYNLAD+LGLTGWS
Sbjct: 121 DQLVMYNLADRLGLTGWS 133

[Close]

BLAST of CmaCh20G010610 vs. TrEMBL
Match: A0A0B2RGU5_GLYSO (Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_012798 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.7e-53
Identity = 106/135 (78.52%), Postives = 116/135 (85.93%), Query Frame = 1


Query: 4   SQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLW 63
           SQ++N N NPNP R  ++ SS    LWPTIDG LGLSEEESV YARRFY FGFALLP LW
Sbjct: 5   SQSNNPNPNPNPHRNNSVASS--MPLWPTIDGPLGLSEEESVGYARRFYTFGFALLPLLW 64

Query: 64  AVNCFYFWPVLR-SRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKL 123
           AVNCFYFWPVLR S SFPRIRPY+VGSAIGFAV   ++SSW+LTFAIGGERLFGPVWD+L
Sbjct: 65  AVNCFYFWPVLRHSHSFPRIRPYVVGSAIGFAVCATLLSSWSLTFAIGGERLFGPVWDQL 124

Query: 124 VMYNLADKLGLTGWS 138
           VMYNLAD+LGLTGWS
Sbjct: 125 VMYNLADRLGLTGWS 137

[Close]

BLAST of CmaCh20G010610 vs. TAIR10
Match: AT5G09310.1 (AT5G09310.1 Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379))

HSP 1 Score: 194.1 bits (492), Expect = 5.6e-50
Identity = 93/132 (70.45%), Postives = 114/132 (86.36%), Query Frame = 1


Query: 5   QNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 64
           +N N N NPNP  +  ++SS  A +WPTIDG LGL+EE SV YARRFYKFGFALLP+LW 
Sbjct: 15  RNRNPNPNPNPNPLSTIISS--AQVWPTIDGPLGLTEEASVDYARRFYKFGFALLPWLWF 74

Query: 65  VNCFYFWPVLR-SRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLV 124
           VNCFYFWPVLR SR+FP+IR Y+V SAIGF+VF A++S+WALTF+IGGE+LFGP++DKLV
Sbjct: 75  VNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGEQLFGPLYDKLV 134

Query: 125 MYNLADKLGLTG 136
           MYN+AD+LGL+G
Sbjct: 135 MYNVADRLGLSG 144

[Close]

BLAST of CmaCh20G010610 vs. NCBI nr
Match: gi|778670219|ref|XP_011649406.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 9.2e-63
Identity = 121/137 (88.32%), Postives = 125/137 (91.24%), Query Frame = 1


Query: 1   MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME  QN N+N N NP    N +SSPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLP
Sbjct: 1   METLQNPNANTNSNP----NTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60

Query: 61  FLWAVNCFYFWPVLRSRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWD 120
           FLWAVNCFYFWPVLRSRSFPRIRPYIVGSAIGF VFMAIISSWALTF+IGGERLFGPVWD
Sbjct: 61  FLWAVNCFYFWPVLRSRSFPRIRPYIVGSAIGFGVFMAIISSWALTFSIGGERLFGPVWD 120

Query: 121 KLVMYNLADKLGLTGWS 138
           KLVMYNLADK+GLTGWS
Sbjct: 121 KLVMYNLADKVGLTGWS 133

[Close]

BLAST of CmaCh20G010610 vs. NCBI nr
Match: gi|659121942|ref|XP_008460893.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 2.2e-56
Identity = 119/165 (72.12%), Postives = 123/165 (74.55%), Query Frame = 1


Query: 1   MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME S N N+N N NP    N ++SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLP
Sbjct: 1   METSHNPNANTNSNP----NTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60

Query: 61  FLWAVNCFYFWPVLRSRSFPRIRPY----------------------------IVGSAIG 120
           FLWAVNCFYFWPVLRSRSFPRIRP                             IVGSAIG
Sbjct: 61  FLWAVNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIG 120

Query: 121 FAVFMAIISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS 138
           F V MAIISSWALTF+IGGERLFGPVWDKLVMYNLADKLGLTGWS
Sbjct: 121 FGVSMAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 161

[Close]

BLAST of CmaCh20G010610 vs. NCBI nr
Match: gi|955324463|ref|XP_014631956.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Glycine max])

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-54
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 1


Query: 1   MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME SQ ++ N NPNP R  N V+S + V WPTIDG LGLSEEESV YARRFYKFGFALLP
Sbjct: 1   MEASQGNHPNPNPNPNR-NNSVASSVPV-WPTIDGPLGLSEEESVGYARRFYKFGFALLP 60

Query: 61  FLWAVNCFYFWPVLR-SRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVW 120
            LWAVNCFYFWP LR S SFPRIRPY+VGSAIGFAVF  ++SSWALTFAIGGERLFGPVW
Sbjct: 61  LLWAVNCFYFWPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGPVW 120

Query: 121 DKLVMYNLADKLGLTGWS 138
           D+LVMYNLAD+LGLTGWS
Sbjct: 121 DQLVMYNLADRLGLTGWS 136

[Close]

BLAST of CmaCh20G010610 vs. NCBI nr
Match: gi|1012346752|gb|KYP57944.1| (putative gamma-secretase subunit PEN-2 [Cajanus cajan])

HSP 1 Score: 216.9 bits (551), Expect = 2.3e-53
Identity = 108/138 (78.26%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 1   MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME S+++N N  PNPIR     S P   LWPTIDG LGLSEEESVSYARRFY FGFALLP
Sbjct: 1   MEASESNNPN--PNPIRNSLASSVP---LWPTIDGPLGLSEEESVSYARRFYNFGFALLP 60

Query: 61  FLWAVNCFYFWPVLR-SRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVW 120
            LWAVNCFYFWPVLR S SFPRIRPY++GSA+GFAVF  ++SSWALTFAIGGERLFGPVW
Sbjct: 61  LLWAVNCFYFWPVLRHSHSFPRIRPYVLGSAVGFAVFATLLSSWALTFAIGGERLFGPVW 120

Query: 121 DKLVMYNLADKLGLTGWS 138
           D+LVMYNLAD+LGLTGWS
Sbjct: 121 DQLVMYNLADRLGLTGWS 133

[Close]

BLAST of CmaCh20G010610 vs. NCBI nr
Match: gi|955317357|ref|XP_014630358.1| (PREDICTED: probable gamma-secretase subunit PEN-2 isoform X2 [Glycine max])

HSP 1 Score: 216.1 bits (549), Expect = 3.9e-53
Identity = 106/135 (78.52%), Postives = 116/135 (85.93%), Query Frame = 1


Query: 4   SQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLW 63
           SQ++N N NPNP R  ++ SS    LWPTIDG LGLSEEESV YARRFY FGFALLP LW
Sbjct: 5   SQSNNPNPNPNPHRNNSVASS--MPLWPTIDGPLGLSEEESVGYARRFYTFGFALLPLLW 64

Query: 64  AVNCFYFWPVLR-SRSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKL 123
           AVNCFYFWPVLR S SFPRIRPY+VGSAIGFAV   ++SSW+LTFAIGGERLFGPVWD+L
Sbjct: 65  AVNCFYFWPVLRHSHSFPRIRPYVVGSAIGFAVCATLLSSWSLTFAIGGERLFGPVWDQL 124

Query: 124 VMYNLADKLGLTGWS 138
           VMYNLAD+LGLTGWS
Sbjct: 125 VMYNLADRLGLTGWS 137

The following BLAST results are available for this feature:

BLAST of CmaCh20G010610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PEN2_ARATH	9.9e-49	70.45	Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2...	[more]
PEN2_BOVIN	6.5e-08	34.41	Gamma-secretase subunit PEN-2 OS=Bos taurus GN=PSENEN PE=3 SV=1	[more]
PEN2_HUMAN	8.4e-08	34.41	Gamma-secretase subunit PEN-2 OS=Homo sapiens GN=PSENEN PE=1 SV=1	[more]
PEN2_MOUSE	1.4e-07	34.41	Gamma-secretase subunit PEN-2 OS=Mus musculus GN=Psenen PE=1 SV=1	[more]
PEN2_RAT	1.9e-07	33.33	Gamma-secretase subunit PEN-2 OS=Rattus norvegicus GN=Psenen PE=3 SV=1	[more]

BLAST of CmaCh20G010610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK38_CUCSA	6.4e-63	88.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302290 PE=4 SV=1	[more]
A0A0B2PPM2_GLYSO	1.1e-54	79.71	Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_011887 PE=4 SV...	[more]
I1KBJ6_SOYBN	1.1e-54	79.71	Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1	[more]
A0A151SSX1_CAJCA	1.6e-53	78.26	Putative gamma-secretase subunit PEN-2 OS=Cajanus cajan GN=KK1_004232 PE=4 SV=1	[more]
A0A0B2RGU5_GLYSO	2.7e-53	78.52	Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_012798 PE=4 SV...	[more]

BLAST of CmaCh20G010610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09310.1	5.6e-50	70.45	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 sub...	[more]

BLAST of CmaCh20G010610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778670219\|ref\|XP_011649406.1\|	9.2e-63	88.32	PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis sativus]	[more]
gi\|659121942\|ref\|XP_008460893.1\|	2.2e-56	72.12	PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo]	[more]
gi\|955324463\|ref\|XP_014631956.1\|	1.6e-54	79.71	PREDICTED: probable gamma-secretase subunit PEN-2 [Glycine max]	[more]
gi\|1012346752\|gb\|KYP57944.1\|	2.3e-53	78.26	putative gamma-secretase subunit PEN-2 [Cajanus cajan]	[more]
gi\|955317357\|ref\|XP_014630358.1\|	3.9e-53	78.52	PREDICTED: probable gamma-secretase subunit PEN-2 isoform X2 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019379	Gamma_Secretase_Asp_P_PEN2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005798	Golgi-associated vesicle
cellular_component	GO:0070765	gamma-secretase complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G010610.1	CmaCh20G010610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019379	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	PFAM	PF10251	PEN-2	coord: 41..127 score: 5.9
None	No IPR available	PANTHER	PTHR16318	GAMMA-SECRETASE SUBUNIT PEN-2	coord: 4..136 score: 1.2
None	No IPR available	PANTHER	PTHR16318:SF0	GAMMA-SECRETASE SUBUNIT PEN-2	coord: 4..136 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G010610	Cucsa.249870	Cucumber (Gy14) v1	cgycmaB0696
CmaCh20G010610	Cla007814	Watermelon (97103) v1	cmawmB532
CmaCh20G010610	Csa2G302290	Cucumber (Chinese Long) v2	cmacuB543
CmaCh20G010610	MELO3C023238	Melon (DHL92) v3.5.1	cmameB491
CmaCh20G010610	ClCG02G000500	Watermelon (Charleston Gray)	cmawcgB482
CmaCh20G010610	CSPI02G15770	Wild cucumber (PI 183967)	cmacpiB548
CmaCh20G010610	CmoCh20G010690	Cucurbita moschata (Rifu)	cmacmoB551
CmaCh20G010610	CmoCh02G006380	Cucurbita moschata (Rifu)	cmacmoB564
CmaCh20G010610	Lsi10G007320	Bottle gourd (USVL1VR-Ls)	cmalsiB508
CmaCh20G010610	MELO3C023238.2	Melon (DHL92) v3.6.1	cmamedB572
CmaCh20G010610	CsaV3_2G018330	Cucumber (Chinese Long) v3	cmacucB0652
CmaCh20G010610	Cla97C02G026740	Watermelon (97103) v2	cmawmbB569
CmaCh20G010610	CsGy2G015760	Cucumber (Gy14) v2	cgybcmaB219
CmaCh20G010610	Carg24316	Silver-seed gourd	carcmaB1004

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G010610	Cucurbita pepo (Zucchini)	cmacpeB565
CmaCh20G010610	Cucurbita pepo (Zucchini)	cmacpeB581
CmaCh20G010610	Silver-seed gourd	carcmaB1464
CmaCh20G010610	Watermelon (97103) v2	cmawmbB561
CmaCh20G010610	Wax gourd	cmawgoB0698
CmaCh20G010610	Wax gourd	cmawgoB0701
CmaCh20G010610	Cucurbita maxima (Rimu)	cmacmaB480
CmaCh20G010610	Cucurbita maxima (Rimu)	cmacmaB484