MELO3C023161 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023161
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Nuclear transcription factor Y subunit A-9
Location	chr8 : 15985264 .. 15985735 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAAGCTAGAATGGCTTTGCCTTTAGCAATGGCGGAAGAACCTGTTTACGTGAATGCGAAGCAGTACCATGGAATTCTACGTCGACGACAATCTCGAGCCAAGGCGGAAGTCGAAAATAGAATATCCAGATCACAAAGAAAGGTAGCCAAACGTAATAAGCTATTCTATATACAATATACATAAATCTCTAACTTGTTAGCTTAAGCATTTTTTTTCTTCGGTAATTAACCAACATGTGTGTGGATCGCAGCCATATCTTCACGAATCCAGACACCTGCACGCCATGAGAAGGGAAAGGGGATGCGGAGGGCGTTTCTTGAGCAAAAAGAAGAAGGTAGAAGCTTCGACTTCGTTGGATGATGATGATGATGGGGAAGGCAGCAACATTAGTTTAGGCTCTGAATCAATGTGCAATGGCAGCAACTGTTATCAAGGGTCCCAACTACATTTATCTGCATATATATGA

mRNA sequence

ATGGCACAAGCTAGAATGGCTTTGCCTTTAGCAATGGCGGAAGAACCTGTTTACGTGAATGCGAAGCAGTACCATGGAATTCTACGTCGACGACAATCTCGAGCCAAGGCGGAAGTCGAAAATAGAATATCCAGATCACAAAGAAAGCCATATCTTCACGAATCCAGACACCTGCACGCCATGAGAAGGGAAAGGGGATGCGGAGGGCGTTTCTTGAGCAAAAAGAAGAAGGTAGAAGCTTCGACTTCGTTGGATGATGATGATGATGGGGAAGGCAGCAACATTAGTTTAGGCTCTGAATCAATGTGCAATGGCAGCAACTGTTATCAAGGGTCCCAACTACATTTATCTGCATATATATGA

Coding sequence (CDS)

ATGGCACAAGCTAGAATGGCTTTGCCTTTAGCAATGGCGGAAGAACCTGTTTACGTGAATGCGAAGCAGTACCATGGAATTCTACGTCGACGACAATCTCGAGCCAAGGCGGAAGTCGAAAATAGAATATCCAGATCACAAAGAAAGCCATATCTTCACGAATCCAGACACCTGCACGCCATGAGAAGGGAAAGGGGATGCGGAGGGCGTTTCTTGAGCAAAAAGAAGAAGGTAGAAGCTTCGACTTCGTTGGATGATGATGATGATGGGGAAGGCAGCAACATTAGTTTAGGCTCTGAATCAATGTGCAATGGCAGCAACTGTTATCAAGGGTCCCAACTACATTTATCTGCATATATATGA

Protein sequence

MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMRRERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGSNCYQGSQLHLSAYI*

Homology

[Close]

BLAST of MELO3C023161 vs. Swiss-Prot
Match: NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-25
Identity = 61/104 (58.65%), Postives = 72/104 (69.23%), Query Frame = 1


Query: 3   QARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMR 62
           Q  + LP    EEPV+VNAKQYHGILRRRQSRA+ E +N++ +S RKPYLHESRHLHA+R
Sbjct: 88  QQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKS-RKPYLHESRHLHAIR 147

Query: 63  RERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGS 107
           R RGCGGRFL+ KK+ E     +D    E SN+S G  +M   S
Sbjct: 148 RPRGCGGRFLNAKKEDEHH---EDSSHEEKSNLSAGKSAMAASS 187

[Close]

BLAST of MELO3C023161 vs. Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-24
Identity = 65/108 (60.19%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 1   MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA 60
           M + R ALPL MA+EPVYVNAKQY GILRRR++RAKAE+E ++ R  RKPYLHESRH HA
Sbjct: 158 MPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIR-DRKPYLHESRHKHA 217

Query: 61  MRRERGCGGRFLSKKKKVEASTSLDDDDDGEGS-NISLGSESMCNGSN 108
           MRR R  GGRF +KK +VEA       D   GS   S GSE +   SN
Sbjct: 218 MRRARASGGRF-AKKSEVEAGEDAGGRDRERGSATNSSGSEQVETDSN 263

[Close]

BLAST of MELO3C023161 vs. Swiss-Prot
Match: NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.3e-23
Identity = 59/106 (55.66%), Postives = 71/106 (66.98%), Query Frame = 1


Query: 1   MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA 60
           M Q  + L     EEPV+VNAKQYHGILRRRQSRAK E  NR  ++ +KPY+HESRHLHA
Sbjct: 84  MQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKA-KKPYMHESRHLHA 143

Query: 61  MRRERGCGGRFLSKKKK----VEASTSLDDDDDGEGSNISLGSESM 103
           +RR RGCGGRFL+ KK+     E   +  D++  E S+ SL SE +
Sbjct: 144 IRRPRGCGGRFLNAKKENGDHKEEEEATSDENTSEASS-SLRSEKL 187

[Close]

BLAST of MELO3C023161 vs. Swiss-Prot
Match: NFYA5_ARATH (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.3e-23
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 1


Query: 1   MAQARMALPLAMAE-EPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLH 60
           +  +R+ LP  + E EP++VNAKQYH ILRRR+ RAK E +N++ +  RKPYLHESRHLH
Sbjct: 163 LVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKC-RKPYLHESRHLH 222

Query: 61  AMRRERGCGGRFLSKKKKVEASTSLDDDDDGEGSNIS---------LGSESM--CNGSNC 120
           A++R RG GGRFL+ KK  E+S SL       G N S         +GS S+   + SNC
Sbjct: 223 ALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGSSSISPSSNSNC 282

[Close]

BLAST of MELO3C023161 vs. Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.2e-23
Identity = 63/125 (50.40%), Postives = 75/125 (60.00%), Query Frame = 1


Query: 1   MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA 60
           M  +RM LP  MA+EPV+VNAKQY  ILRRRQ+RAKAE+E ++ +S RKPYLHESRH HA
Sbjct: 152 MPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKS-RKPYLHESRHQHA 211

Query: 61  MRRERGCGGRFLSK------KKKVEASTSLDDDDDGEGSNISLGSESMCNGSNCYQGSQL 120
           MRR RG GGRF  K      K+K E  ++         SN   G E+        QG ++
Sbjct: 212 MRRPRGTGGRFAKKTNTEASKRKAEEKSNGHVTQSPSSSNSDQG-EAWNGDYRTPQGDEM 271

[Close]

BLAST of MELO3C023161 vs. TrEMBL
Match: A0A0A0KWA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G159320 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-54
Identity = 110/117 (94.02%), Postives = 112/117 (95.73%), Query Frame = 1


Query: 4   ARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMRR 63
           +RMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVEN+ISRSQRKPYLHESRHLHAMRR
Sbjct: 229 SRMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRR 288

Query: 64  ERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGSNCYQGSQLHLSAYI 121
           ERGCGGRFLSK KK EAS SL DDDDGEGSNISLGSESMCNGS CYQGSQLHLSAYI
Sbjct: 289 ERGCGGRFLSKNKKAEAS-SLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 344

[Close]

BLAST of MELO3C023161 vs. TrEMBL
Match: A0A0D6QYF4_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = 1


Query: 3   QARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMR 62
           QARM LPL   EEPVYVNAKQYHGILRRRQ RAKAE+EN++ +S RKPYLHESRHLHAMR
Sbjct: 167 QARMPLPLETEEEPVYVNAKQYHGILRRRQLRAKAELENKVVKS-RKPYLHESRHLHAMR 226

Query: 63  RERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSES 102
           R RGCGGRFL+ KK  E+  + D+    +G     GS S
Sbjct: 227 RARGCGGRFLNTKKPEESKVNADNGYGSQGPVAQTGSSS 264

[Close]

BLAST of MELO3C023161 vs. TrEMBL
Match: A0A0C9RI17_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_19004_1876 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-27
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = 1


Query: 3   QARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMR 62
           QARM LPL   EEPVYVNAKQYHGILRRRQ RAKAE+EN++ +S RKPYLHESRHLHAMR
Sbjct: 170 QARMPLPLETEEEPVYVNAKQYHGILRRRQLRAKAELENKVVKS-RKPYLHESRHLHAMR 229

Query: 63  RERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSES 102
           R RGCGGRFL+ KK  E+  + D+    +G     GS S
Sbjct: 230 RARGCGGRFLNTKKPEESKVNTDNGYGSQGLVAQTGSSS 267

[Close]

BLAST of MELO3C023161 vs. TrEMBL
Match: A0A061EY16_THECC (Nuclear factor Y, putative OS=Theobroma cacao GN=TCM_024732 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-27
Identity = 68/105 (64.76%), Postives = 79/105 (75.24%), Query Frame = 1


Query: 4   ARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMRR 63
           ARMALPL MAEEPVYVNAKQYHGILRRRQSRAKAE+E ++ +  RKPYLHESRHLHAMRR
Sbjct: 164 ARMALPLEMAEEPVYVNAKQYHGILRRRQSRAKAELEKKLIK-VRKPYLHESRHLHAMRR 223

Query: 64  ERGCGGRFLSKKK-KVEASTSLDDDDDGEGSNISLGSESMCNGSN 108
            RGCGGRFL+ KK   +AS +  D      SN+S    +  +G +
Sbjct: 224 ARGCGGRFLNTKKLDSDASNATPDKGSDTSSNLSSHPTNSLSGKS 267

[Close]

BLAST of MELO3C023161 vs. TrEMBL
Match: Q9M607_VITRI (Transcription factor OS=Vitis riparia GN=Rev136-2 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-26
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 4   ARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMRR 63
           ARMALP+ MAEEPVYVNAKQYHGILRRRQSRAKAE+E ++ +  RKPYLHESRH HAMRR
Sbjct: 35  ARMALPIEMAEEPVYVNAKQYHGILRRRQSRAKAELEKKLIK-VRKPYLHESRHQHAMRR 94

Query: 64  ERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGS 100
            RGCGGRFL+  KK++++ S D  D G   +++L +
Sbjct: 95  ARGCGGRFLN-TKKLDSNASYDMPDKGSDPDVNLST 128

[Close]

BLAST of MELO3C023161 vs. TAIR10
Match: AT1G30500.2 (AT1G30500.2 nuclear factor Y, subunit A7)

HSP 1 Score: 116.7 bits (291), Expect = 9.9e-27
Identity = 61/104 (58.65%), Postives = 72/104 (69.23%), Query Frame = 1


Query: 3   QARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMR 62
           Q  + LP    EEPV+VNAKQYHGILRRRQSRA+ E +N++ +S RKPYLHESRHLHA+R
Sbjct: 88  QQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKS-RKPYLHESRHLHAIR 147

Query: 63  RERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGS 107
           R RGCGGRFL+ KK+ E     +D    E SN+S G  +M   S
Sbjct: 148 RPRGCGGRFLNAKKEDEHH---EDSSHEEKSNLSAGKSAMAASS 187

[Close]

BLAST of MELO3C023161 vs. TAIR10
Match: AT5G12840.1 (AT5G12840.1 nuclear factor Y, subunit A1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25
Identity = 65/108 (60.19%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 1   MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA 60
           M + R ALPL MA+EPVYVNAKQY GILRRR++RAKAE+E ++ R  RKPYLHESRH HA
Sbjct: 158 MPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIR-DRKPYLHESRHKHA 217

Query: 61  MRRERGCGGRFLSKKKKVEASTSLDDDDDGEGS-NISLGSESMCNGSN 108
           MRR R  GGRF +KK +VEA       D   GS   S GSE +   SN
Sbjct: 218 MRRARASGGRF-AKKSEVEAGEDAGGRDRERGSATNSSGSEQVETDSN 263

[Close]

BLAST of MELO3C023161 vs. TAIR10
Match: AT2G34720.1 (AT2G34720.1 nuclear factor Y, subunit A4)

HSP 1 Score: 108.2 bits (269), Expect = 3.5e-24
Identity = 59/106 (55.66%), Postives = 71/106 (66.98%), Query Frame = 1


Query: 1   MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA 60
           M Q  + L     EEPV+VNAKQYHGILRRRQSRAK E  NR  ++ +KPY+HESRHLHA
Sbjct: 84  MQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKA-KKPYMHESRHLHA 143

Query: 61  MRRERGCGGRFLSKKKK----VEASTSLDDDDDGEGSNISLGSESM 103
           +RR RGCGGRFL+ KK+     E   +  D++  E S+ SL SE +
Sbjct: 144 IRRPRGCGGRFLNAKKENGDHKEEEEATSDENTSEASS-SLRSEKL 187

[Close]

BLAST of MELO3C023161 vs. TAIR10
Match: AT1G54160.1 (AT1G54160.1 nuclear factor Y, subunit A5)

HSP 1 Score: 108.2 bits (269), Expect = 3.5e-24
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 1


Query: 1   MAQARMALPLAMAE-EPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLH 60
           +  +R+ LP  + E EP++VNAKQYH ILRRR+ RAK E +N++ +  RKPYLHESRHLH
Sbjct: 163 LVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKC-RKPYLHESRHLH 222

Query: 61  AMRRERGCGGRFLSKKKKVEASTSLDDDDDGEGSNIS---------LGSESM--CNGSNC 120
           A++R RG GGRFL+ KK  E+S SL       G N S         +GS S+   + SNC
Sbjct: 223 ALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGSSSISPSSNSNC 282

[Close]

BLAST of MELO3C023161 vs. TAIR10
Match: AT3G20910.1 (AT3G20910.1 nuclear factor Y, subunit A9)

HSP 1 Score: 107.8 bits (268), Expect = 4.6e-24
Identity = 63/125 (50.40%), Postives = 75/125 (60.00%), Query Frame = 1


Query: 1   MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA 60
           M  +RM LP  MA+EPV+VNAKQY  ILRRRQ+RAKAE+E ++ +S RKPYLHESRH HA
Sbjct: 152 MPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKS-RKPYLHESRHQHA 211

Query: 61  MRRERGCGGRFLSK------KKKVEASTSLDDDDDGEGSNISLGSESMCNGSNCYQGSQL 120
           MRR RG GGRF  K      K+K E  ++         SN   G E+        QG ++
Sbjct: 212 MRRPRGTGGRFAKKTNTEASKRKAEEKSNGHVTQSPSSSNSDQG-EAWNGDYRTPQGDEM 271

[Close]

BLAST of MELO3C023161 vs. NCBI nr
Match: gi|659121698|ref|XP_008460780.1| (PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 2.0e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA 60
           MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA
Sbjct: 146 MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA 205

Query: 61  MRRERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGSNCYQGSQLHLSAYI 120
           MRRERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGSNCYQGSQLHLSAYI
Sbjct: 206 MRRERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGSNCYQGSQLHLSAYI 265

[Close]

BLAST of MELO3C023161 vs. NCBI nr
Match: gi|449465501|ref|XP_004150466.1| (PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 3.1e-54
Identity = 110/117 (94.02%), Postives = 112/117 (95.73%), Query Frame = 1


Query: 4   ARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMRR 63
           +RMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVEN+ISRSQRKPYLHESRHLHAMRR
Sbjct: 149 SRMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRR 208

Query: 64  ERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGSNCYQGSQLHLSAYI 121
           ERGCGGRFLSK KK EAS SL DDDDGEGSNISLGSESMCNGS CYQGSQLHLSAYI
Sbjct: 209 ERGCGGRFLSKNKKAEAS-SLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 264

[Close]

BLAST of MELO3C023161 vs. NCBI nr
Match: gi|700198675|gb|KGN53833.1| (hypothetical protein Csa_4G159320 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 3.1e-54
Identity = 110/117 (94.02%), Postives = 112/117 (95.73%), Query Frame = 1


Query: 4   ARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMRR 63
           +RMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVEN+ISRSQRKPYLHESRHLHAMRR
Sbjct: 229 SRMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRR 288

Query: 64  ERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGSNCYQGSQLHLSAYI 121
           ERGCGGRFLSK KK EAS SL DDDDGEGSNISLGSESMCNGS CYQGSQLHLSAYI
Sbjct: 289 ERGCGGRFLSKNKKAEAS-SLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 344

[Close]

BLAST of MELO3C023161 vs. NCBI nr
Match: gi|672109573|ref|XP_008790783.1| (PREDICTED: nuclear transcription factor Y subunit A-1 isoform X1 [Phoenix dactylifera])

HSP 1 Score: 132.1 bits (331), Expect = 6.5e-28
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1


Query: 1   MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA 60
           M   RM LPL MAEEPVYVNAKQYHGILRRRQSRAKAE+E ++ +  RKPYLHESRHLHA
Sbjct: 159 MPYTRMPLPLEMAEEPVYVNAKQYHGILRRRQSRAKAELEKKVIK-VRKPYLHESRHLHA 218

Query: 61  MRRERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGSN 108
           MRR RGCGGRFL+  KK EAS S+ + ++G  +  SL ++S  + ++
Sbjct: 219 MRRARGCGGRFLN-TKKAEASASIANPENGGNAGASLPTQSASSSAS 263

[Close]

BLAST of MELO3C023161 vs. NCBI nr
Match: gi|672109578|ref|XP_008790800.1| (PREDICTED: nuclear transcription factor Y subunit A-1 isoform X2 [Phoenix dactylifera])

HSP 1 Score: 132.1 bits (331), Expect = 6.5e-28
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1


Query: 1   MAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHA 60
           M   RM LPL MAEEPVYVNAKQYHGILRRRQSRAKAE+E ++ +  RKPYLHESRHLHA
Sbjct: 159 MPYTRMPLPLEMAEEPVYVNAKQYHGILRRRQSRAKAELEKKVIK-VRKPYLHESRHLHA 218

Query: 61  MRRERGCGGRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGSN 108
           MRR RGCGGRFL+  KK EAS S+ + ++G  +  SL ++S  + ++
Sbjct: 219 MRRARGCGGRFLN-TKKAEASASIANPENGGNAGASLPTQSASSSAS 263

The following BLAST results are available for this feature:

BLAST of MELO3C023161 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYA7_ARATH	1.8e-25	58.65	Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2...	[more]
NFYA1_ARATH	2.0e-24	60.19	Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2...	[more]
NFYA4_ARATH	6.3e-23	55.66	Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2...	[more]
NFYA5_ARATH	6.3e-23	47.01	Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2...	[more]
NFYA9_ARATH	8.2e-23	50.40	Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2...	[more]

BLAST of MELO3C023161 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWA0_CUCSA	2.2e-54	94.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G159320 PE=4 SV=1	[more]
A0A0D6QYF4_ARACU	1.3e-27	66.67	Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1	[more]
A0A0C9RI17_9SPER	1.7e-27	66.67	TSA: Wollemia nobilis Ref_Wollemi_Transcript_19004_1876 transcribed RNA sequence...	[more]
A0A061EY16_THECC	3.8e-27	64.76	Nuclear factor Y, putative OS=Theobroma cacao GN=TCM_024732 PE=4 SV=1	[more]
Q9M607_VITRI	1.1e-26	66.67	Transcription factor OS=Vitis riparia GN=Rev136-2 PE=2 SV=1	[more]

BLAST of MELO3C023161 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30500.2	9.9e-27	58.65	nuclear factor Y, subunit A7	[more]
AT5G12840.1	1.1e-25	60.19	nuclear factor Y, subunit A1	[more]
AT2G34720.1	3.5e-24	55.66	nuclear factor Y, subunit A4	[more]
AT1G54160.1	3.5e-24	47.01	nuclear factor Y, subunit A5	[more]
AT3G20910.1	4.6e-24	50.40	nuclear factor Y, subunit A9	[more]

BLAST of MELO3C023161 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121698\|ref\|XP_008460780.1\|	2.0e-61	100.00	PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis melo]	[more]
gi\|449465501\|ref\|XP_004150466.1\|	3.1e-54	94.02	PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis sativus]	[more]
gi\|700198675\|gb\|KGN53833.1\|	3.1e-54	94.02	hypothetical protein Csa_4G159320 [Cucumis sativus]	[more]
gi\|672109573\|ref\|XP_008790783.1\|	6.5e-28	63.55	PREDICTED: nuclear transcription factor Y subunit A-1 isoform X1 [Phoenix dactyl...	[more]
gi\|672109578\|ref\|XP_008790800.1\|	6.5e-28	63.55	PREDICTED: nuclear transcription factor Y subunit A-1 isoform X2 [Phoenix dactyl...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001289	NFYA
IPR018362	CCAAT-binding_factor_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0016602	CCAAT-binding factor complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023161T1	MELO3C023161T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001289	Nuclear transcription factor Y subunit A	PRINTS	PR00616	CCAATSUBUNTB	coord: 16..38 score: 1.3E-24coord: 48..71 score: 1.3
IPR001289	Nuclear transcription factor Y subunit A	PANTHER	PTHR12632	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	coord: 1..101 score: 5.3
IPR001289	Nuclear transcription factor Y subunit A	PFAM	PF02045	CBFB_NFYA	coord: 15..71 score: 6.8
IPR001289	Nuclear transcription factor Y subunit A	SMART	SM00521	cbf3	coord: 12..74 score: 2.1
IPR001289	Nuclear transcription factor Y subunit A	PROFILE	PS51152	NFYA_HAP2_2	coord: 13..74 score: 38
IPR018362	CCAAT-binding factor, conserved site	PROSITE	PS00686	NFYA_HAP2_1	coord: 18..38 scor
None	No IPR available	unknown	Coil	Coil	coord: 29..49 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023161	Csa4G159320	Cucumber (Chinese Long) v2	cumeB331
MELO3C023161	Cla000827	Watermelon (97103) v1	mewmB582
MELO3C023161	ClCG04G000250	Watermelon (Charleston Gray)	mewcgB526
MELO3C023161	Cla97C04G068610	Watermelon (97103) v2	mewmbB534
MELO3C023161	CSPI04G10460	Wild cucumber (PI 183967)	cpimeB332
MELO3C023161	Cucsa.374630	Cucumber (Gy14) v1	cgymeB608
MELO3C023161	CmaCh03G000770	Cucurbita maxima (Rimu)	cmameB613
MELO3C023161	CmoCh03G000780	Cucurbita moschata (Rifu)	cmomeB601
MELO3C023161	Lsi01G018770	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C023161	Cp4.1LG10g11710	Cucurbita pepo (Zucchini)	cpemeB072
MELO3C023161	Carg22465	Silver-seed gourd	carmeB0195
MELO3C023161	CsaV3_4G011610	Cucumber (Chinese Long) v3	cucmeB338

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023161	Cucurbita maxima (Rimu)	cmameB810
MELO3C023161	Cucurbita moschata (Rifu)	cmomeB794
MELO3C023161	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C023161	Cucumber (Gy14) v2	cgybmeB287
MELO3C023161	Silver-seed gourd	carmeB0288
MELO3C023161	Wax gourd	mewgoB658