Cucsa.374630 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.374630
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nuclear transcription factor Y subunit
Location	scaffold03735 : 2520 .. 5119 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGGTGTAGGACCAACACTACCATATAAGAGTAGAGATGTATCCACTGTTCTTCCATTCATGAATAATGAACACTACCATGCTTCTACTTCTCAATCAGAGCTTCTTACCCTTTCAATGGTTCTTTCTCTCTCTAGGTCTCTATTTTTTTCTCTCTCTCTCCTTCATATTGAAACTGATCATTTCTATTTTTTAACAGACAGCCAATACGTCCTATGCATACCACGACCCGTCCTATGGAGGACTGCTGTCTCCATTTGGATTTCAAACAATGGTATGTGGACAAGTTATTTCAAAAAGTCTCATTCCATAATGTTCTCGTTTTTTATTAACGTATGTTTTCTAATTTTTAATTTTTTAATGTAAGAAAACAGTGAAACATGCATGTTTAGTATCCTTCAGCCTTAAGAATAAGAGCTTATTTATTAACTATTTGGTAGTTTTTAGATTTTAATTTTGGAAATTTAAGGTTTTAGTTTCATAATCATTTGGTTAACCATAACCCTACTTTCCTACTTTCAAACTATTAATTTATTTATTTTGTTGTACATATATACACACACATATGCTGTCAAAATTGTATTCAAATAACCAAGTTTTGAAAACACACATCCCATTTGGTAGCCACATGAGTTTTTATTTTAGTTTTTAAAAAACAATTAAGTATTAAATATCATTTCCATTCTTCTTCTTCTTCTTTTTTTTTTTGCTGCCTACGGATCTTTTCAAACACCAAATTAAATTATGAAAACTAAAACTAGTAGTCTTACAAAAATTTGTCTTAAAAATTCAACTCTTTTACTTATAATTAACAATCAGCTAAATTGACTTAATTTTAAAAAAGAAAAAAAATTTGTAATCAAATGTAGTTAAATAAACTATTTTTATAAAAAATAACAAATTTGATCAAATATTTACAACATATAGTAAAATTTTAGATCCTACCAATAATAGACACCAATAGAAGTTTATCACTTACTATATTCATAGAATCTAAAATTTTCTATAGTTTGTAAATATTTTAATTTATTTTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTAAATAGACCATTTGAAATAAGTTATATTGTTGGAGAACAAAGACGTACAATTTTTAAAATTCAAACCATACAAGTAAACCAATGACGAACATATTTGAATTAACGACTATAATAATTAAGTGTACTATTAAATAATTAAGTGTACTATTAATAATAGTTCATATACTGCATCCATTTTTGGGTACCATGTCTCGCATTTAATTTCCTATATCGAAAAATTTGTTTCTATAAAAACCACTTTCGAGTTTGTTAGGCTCAAGGAGTTGAGCTGAAGGAGTGACCTGTTCTCCTTGTTTTGTTTAAGCCCTACATGAAAAAAAAAACATTCTTTTTCAACTTTGTATAATTGGAGTCTCATAGCTTTATTCCTACATAAAGCCGTCCACAATTTAACTAAAAAGGTTGATTTTTACTTAGGATTGTATAGAGTTAAGTTTTAGCTAAAAATAATGTTGATTGTTACTCAGCATAATTCAGACTATAGTAGAATGGCTTTGCCTTTAGCGATGGCAGAAGAACCTGTTTACGTGAATGCCAAGCAGTACCATGGAATTCTACGTCGACGACAATCCCGAGCCAAGGCCGAAGTCGAAAATAAAATATCCAGATCACAAAGAAAGGTAGACAAACGTAACCAACTATCTATATACAACATAAACATAAATCTCTAACTTTTTAGTTTAAGCTTTTTTCTTCGATAACCAACATGTGTGTGGATCGCAGCCATATCTTCATGAATCGAGACACCTGCACGCCATGAGAAGGGAAAGGGGATGCGGAGGGCGTTTCTTGAGCAAAAACAAGAAGGCAGAAGCTTCGTCTTTGTTGGATGATGATGATGGGGAAGGCAGCAACATTAGTTTAGGCTCTGAATCAATGTGCAATGGCAGCAAGTGTTATCAAGGATCCCAACTACATTTATCTGCATATATATGA

mRNA sequence

TCAGGTGTAGGACCAACACTACCATATAAGAGTAGAGATGTATCCACTGTTCTTCCATTCATGAATAATGAACACTACCATGCTTCTACTTCTCAATCAGAGCTTCTTACCCTTTCAATGACAGCCAATACGTCCTATGCATACCACGACCCGTCCTATGGAGGACTGCTGTCTCCATTTGGATTTCAAACAATGCATAATTCAGACTATAGTAGAATGGCTTTGCCTTTAGCGATGGCAGAAGAACCTGTTTACGTGAATGCCAAGCAGTACCATGGAATTCTACGTCGACGACAATCCCGAGCCAAGGCCGAAGTCGAAAATAAAATATCCAGATCACAAAGAAAGCCATATCTTCATGAATCGAGACACCTGCACGCCATGAGAAGGGAAAGGGGATGCGGAGGGCGTTTCTTGAGCAAAAACAAGAAGGCAGAAGCTTCGTCTTTGTTGGATGATGATGATGGGGAAGGCAGCAACATTAGTTTAGGCTCTGAATCAATGTGCAATGGCAGCAAGTGTTATCAAGGATCCCAACTACATTTATCTGCATATATATGA

Coding sequence (CDS)

ATGAATAATGAACACTACCATGCTTCTACTTCTCAATCAGAGCTTCTTACCCTTTCAATGACAGCCAATACGTCCTATGCATACCACGACCCGTCCTATGGAGGACTGCTGTCTCCATTTGGATTTCAAACAATGCATAATTCAGACTATAGTAGAATGGCTTTGCCTTTAGCGATGGCAGAAGAACCTGTTTACGTGAATGCCAAGCAGTACCATGGAATTCTACGTCGACGACAATCCCGAGCCAAGGCCGAAGTCGAAAATAAAATATCCAGATCACAAAGAAAGCCATATCTTCATGAATCGAGACACCTGCACGCCATGAGAAGGGAAAGGGGATGCGGAGGGCGTTTCTTGAGCAAAAACAAGAAGGCAGAAGCTTCGTCTTTGTTGGATGATGATGATGGGGAAGGCAGCAACATTAGTTTAGGCTCTGAATCAATGTGCAATGGCAGCAAGTGTTATCAAGGATCCCAACTACATTTATCTGCATATATATGA

Protein sequence

MNNEHYHASTSQSELLTLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKNKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI*

Homology

[Close]

BLAST of Cucsa.374630 vs. Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-27
Identity = 70/131 (53.44%), Postives = 85/131 (64.89%), Query Frame = 1


Query: 28  YHDPSYGGLLSPFGFQTMHNSDY-----SRMALPLAMAEEPVYVNAKQYHGILRRRQSRA 87
           Y DP YGGL+  +G Q +    Y      R ALPL MA+EPVYVNAKQY GILRRR++RA
Sbjct: 133 YQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARA 192

Query: 88  KAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKNKKAEASSLLDDDDGEGSNIS 147
           KAE+E K+ R  RKPYLHESRH HAMRR R  GGRF +K  + EA      +D  G +  
Sbjct: 193 KAELERKVIR-DRKPYLHESRHKHAMRRARASGGRF-AKKSEVEAG-----EDAGGRDRE 252

Query: 148 LGSESMCNGSK 154
            GS +  +GS+
Sbjct: 253 RGSATNSSGSE 256

[Close]

BLAST of Cucsa.374630 vs. Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.8e-27
Identity = 78/179 (43.58%), Postives = 99/179 (55.31%), Query Frame = 1


Query: 2   NNEHYHASTSQS----ELLTLSMTANTSYAYHDPSYGGLLS-----PFGFQTMHNSDYSR 61
           N E  H   +Q     +L+  ++   +S  Y DP Y G++      P GF       +SR
Sbjct: 97  NQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSR 156

Query: 62  MALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRER 121
           M LP  MA+EPV+VNAKQY  ILRRRQ+RAKAE+E K+ +S RKPYLHESRH HAMRR R
Sbjct: 157 MPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKS-RKPYLHESRHQHAMRRPR 216

Query: 122 GCGGRFLSK------NKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAY 166
           G GGRF  K       +KAE  S         S+ S   E+     +  QG ++  SAY
Sbjct: 217 GTGGRFAKKTNTEASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGDYRTPQGDEMQSSAY 274

[Close]

BLAST of Cucsa.374630 vs. Swiss-Prot
Match: NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-26
Identity = 73/157 (46.50%), Postives = 90/157 (57.32%), Query Frame = 1


Query: 2   NNEHYHASTSQSELLTLSMTANTSYAYHDPSYGGLLSP--FGFQTMH----NSDYSRMAL 61
           N E    S   S+  T +  A   Y Y DP Y  + +P    +  +H          + L
Sbjct: 34  NYESIVTSLVYSDPGTTNSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPL 93

Query: 62  PLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCG 121
           P    EEPV+VNAKQYHGILRRRQSRA+ E +NK+ +S RKPYLHESRHLHA+RR RGCG
Sbjct: 94  PSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKS-RKPYLHESRHLHAIRRPRGCG 153

Query: 122 GRFLSKNKKAEASSLLDDDDGEGSNISLGSESMCNGS 153
           GRFL+  K+ E     D    E SN+S G  +M   S
Sbjct: 154 GRFLNAKKEDEHHE--DSSHEEKSNLSAGKSAMAASS 187

[Close]

BLAST of Cucsa.374630 vs. Swiss-Prot
Match: NFYA8_ARATH (Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-23
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 1


Query: 22  ANTSYAYHDPSYGGLLSPFGF---QTMHNSDYSRMALPLAMAE-EPVYVNAKQYHGILRR 81
           AN S+ Y DP +GGL+ P  +    T+ N   +R+ LP  + E EPV+VNAKQ+H I+RR
Sbjct: 129 ANFSFHYADPHFGGLM-PAAYLPQATIWNPQMTRVPLPFDLIENEPVFVNAKQFHAIMRR 188

Query: 82  RQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKNKKAEASSLLDD 134
           RQ RAK E +NK+ ++ RKPYLHESRH+HA++R RG GGRFL+  K  E++    D
Sbjct: 189 RQQRAKLEAQNKLIKA-RKPYLHESRHVHALKRPRGSGGRFLNTKKLQESTDPKQD 242

[Close]

BLAST of Cucsa.374630 vs. Swiss-Prot
Match: NFYA3_ARATH (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 1


Query: 22  ANTSYAYHDPSYGGLLS-------PFGFQTMHNSDYSRMALPLAMAE-EPVYVNAKQYHG 81
           AN S+ Y DP YGGLL+       P     M +    R+ LP  + E +PV+VNAKQYH 
Sbjct: 131 ANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHA 190

Query: 82  ILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKNKKAEAS 129
           I+RRRQ RAK E +NK+ R+ RKPYLHESRH+HA++R RG GGRFL+  K  + S
Sbjct: 191 IMRRRQQRAKLEAQNKLIRA-RKPYLHESRHVHALKRPRGSGGRFLNTKKLLQES 244

[Close]

BLAST of Cucsa.374630 vs. TrEMBL
Match: A0A0A0KWA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G159320 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 5.7e-90
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 1


Query: 1   MNNEHYHASTSQSELLTLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMA 60
           MNNEHYHASTSQSELL+LSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMA
Sbjct: 179 MNNEHYHASTSQSELLSLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMA 238

Query: 61  EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 120
           EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS
Sbjct: 239 EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 298

Query: 121 KNKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 167
           KNKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI
Sbjct: 299 KNKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 344

[Close]

BLAST of Cucsa.374630 vs. TrEMBL
Match: A0A0B0PEQ5_GOSAR (Nuclear transcription factor Y subunit A-1-like protein OS=Gossypium arboreum GN=F383_01510 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.9e-33
Identity = 82/155 (52.90%), Postives = 105/155 (67.74%), Query Frame = 1


Query: 6   YHASTSQSELLTLSMTANTSYAYHDPSYGGLLSPFGFQTM-----HNSDYSRMALPLAMA 65
           +H   SQ EL+  S+   TSY Y DP YGG+L+ +G Q M     +   ++RM LPL M 
Sbjct: 96  HHEPNSQMELVGHSIVL-TSYPYSDPQYGGMLTSYGPQMMVSPHLYGMHHARMPLPLQME 155

Query: 66  EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 125
           EEPVYVNAKQYHGILRRRQ RAKAE+E K  +  RKPYLHESRHLHAMRR RGCGGRFL+
Sbjct: 156 EEPVYVNAKQYHGILRRRQIRAKAELEKKAIK-VRKPYLHESRHLHAMRRARGCGGRFLN 215

Query: 126 KNKKAEASSLLDDDDGEGSNISLGSE-SMCNGSKC 155
             K+ +  +      G  S+ ++ ++ S+ +GS+C
Sbjct: 216 TKKQGDDVTSPTSQKGMNSDENISTKSSILSGSEC 248

[Close]

BLAST of Cucsa.374630 vs. TrEMBL
Match: A0A0D2PDJ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G172100 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.9e-33
Identity = 82/155 (52.90%), Postives = 105/155 (67.74%), Query Frame = 1


Query: 6   YHASTSQSELLTLSMTANTSYAYHDPSYGGLLSPFGFQTM-----HNSDYSRMALPLAMA 65
           +H   SQ EL+  S+   TSY Y DP YGG+L+ +G Q M     +   ++RM LPL M 
Sbjct: 96  HHEPNSQMELVGHSIVL-TSYPYSDPQYGGMLTSYGPQMMVSPHLYGMHHARMPLPLQME 155

Query: 66  EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 125
           EEPVYVNAKQYHGILRRRQ RAKAE+E K  +  RKPYLHESRHLHAMRR RGCGGRFL+
Sbjct: 156 EEPVYVNAKQYHGILRRRQIRAKAELEKKAIKI-RKPYLHESRHLHAMRRARGCGGRFLN 215

Query: 126 KNKKAEASSLLDDDDGEGSNISLGSE-SMCNGSKC 155
             K+ +  +      G  S+ ++ ++ S+ +GS+C
Sbjct: 216 TKKQGDDVTSPTSQKGMNSDENISTKSSILSGSEC 248

[Close]

BLAST of Cucsa.374630 vs. TrEMBL
Match: A0A0D6QYF4_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.3e-32
Identity = 78/139 (56.12%), Postives = 95/139 (68.35%), Query Frame = 1


Query: 22  ANTSYAYHDPSYGGLLSPFGFQTMHNS-----DYSRMALPLAMAEEPVYVNAKQYHGILR 81
           A  SY Y DP +GG L+ +G Q + +S       +RM LPL   EEPVYVNAKQYHGILR
Sbjct: 134 ARASYPYTDPYFGGFLAAYGAQAVIHSHMLGVQQARMPLPLETEEEPVYVNAKQYHGILR 193

Query: 82  RRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKNKKAEASSLLDDDDG 141
           RRQ RAKAE+ENK+ +S RKPYLHESRHLHAMRR RGCGGRFL+  K  E  S ++ D+G
Sbjct: 194 RRQLRAKAELENKVVKS-RKPYLHESRHLHAMRRARGCGGRFLNTKKPEE--SKVNADNG 253

Query: 142 EGSNISLGSESMCNGSKCY 156
            GS   +      +GS+ +
Sbjct: 254 YGSQGPVAQTGSSSGSEAF 269

[Close]

BLAST of Cucsa.374630 vs. TrEMBL
Match: A0A061EY16_THECC (Nuclear factor Y, putative OS=Theobroma cacao GN=TCM_024732 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.3e-32
Identity = 82/145 (56.55%), Postives = 100/145 (68.97%), Query Frame = 1


Query: 6   YHASTSQSELLTLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDY-----SRMALPLAMA 65
           Y A  ++ EL+  S+ A  SY Y DP YGG + P+G Q++ +        +RMALPL MA
Sbjct: 115 YIAPRTRLELVGHSI-ACPSYPYADPYYGGAMPPYGPQSLVHPHCLGVHPARMALPLEMA 174

Query: 66  EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 125
           EEPVYVNAKQYHGILRRRQSRAKAE+E K+ +  RKPYLHESRHLHAMRR RGCGGRFL+
Sbjct: 175 EEPVYVNAKQYHGILRRRQSRAKAELEKKLIK-VRKPYLHESRHLHAMRRARGCGGRFLN 234

Query: 126 KNKKAEASSLLDDDDGEGSNISLGS 146
             K    +S    D G  ++ +L S
Sbjct: 235 TKKLDSDASNATPDKGSDTSSNLSS 257

[Close]

BLAST of Cucsa.374630 vs. TAIR10
Match: AT5G12840.1 (AT5G12840.1 nuclear factor Y, subunit A1)

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-28
Identity = 70/131 (53.44%), Postives = 85/131 (64.89%), Query Frame = 1


Query: 28  YHDPSYGGLLSPFGFQTMHNSDY-----SRMALPLAMAEEPVYVNAKQYHGILRRRQSRA 87
           Y DP YGGL+  +G Q +    Y      R ALPL MA+EPVYVNAKQY GILRRR++RA
Sbjct: 133 YQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARA 192

Query: 88  KAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKNKKAEASSLLDDDDGEGSNIS 147
           KAE+E K+ R  RKPYLHESRH HAMRR R  GGRF +K  + EA      +D  G +  
Sbjct: 193 KAELERKVIR-DRKPYLHESRHKHAMRRARASGGRF-AKKSEVEAG-----EDAGGRDRE 252

Query: 148 LGSESMCNGSK 154
            GS +  +GS+
Sbjct: 253 RGSATNSSGSE 256

[Close]

BLAST of Cucsa.374630 vs. TAIR10
Match: AT3G20910.1 (AT3G20910.1 nuclear factor Y, subunit A9)

HSP 1 Score: 122.1 bits (305), Expect = 3.3e-28
Identity = 78/179 (43.58%), Postives = 99/179 (55.31%), Query Frame = 1


Query: 2   NNEHYHASTSQS----ELLTLSMTANTSYAYHDPSYGGLLS-----PFGFQTMHNSDYSR 61
           N E  H   +Q     +L+  ++   +S  Y DP Y G++      P GF       +SR
Sbjct: 97  NQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSR 156

Query: 62  MALPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRER 121
           M LP  MA+EPV+VNAKQY  ILRRRQ+RAKAE+E K+ +S RKPYLHESRH HAMRR R
Sbjct: 157 MPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKS-RKPYLHESRHQHAMRRPR 216

Query: 122 GCGGRFLSK------NKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAY 166
           G GGRF  K       +KAE  S         S+ S   E+     +  QG ++  SAY
Sbjct: 217 GTGGRFAKKTNTEASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGDYRTPQGDEMQSSAY 274

[Close]

BLAST of Cucsa.374630 vs. TAIR10
Match: AT1G30500.2 (AT1G30500.2 nuclear factor Y, subunit A7)

HSP 1 Score: 120.6 bits (301), Expect = 9.5e-28
Identity = 73/157 (46.50%), Postives = 90/157 (57.32%), Query Frame = 1


Query: 2   NNEHYHASTSQSELLTLSMTANTSYAYHDPSYGGLLSP--FGFQTMH----NSDYSRMAL 61
           N E    S   S+  T +  A   Y Y DP Y  + +P    +  +H          + L
Sbjct: 34  NYESIVTSLVYSDPGTTNSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPL 93

Query: 62  PLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCG 121
           P    EEPV+VNAKQYHGILRRRQSRA+ E +NK+ +S RKPYLHESRHLHA+RR RGCG
Sbjct: 94  PSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKS-RKPYLHESRHLHAIRRPRGCG 153

Query: 122 GRFLSKNKKAEASSLLDDDDGEGSNISLGSESMCNGS 153
           GRFL+  K+ E     D    E SN+S G  +M   S
Sbjct: 154 GRFLNAKKEDEHHE--DSSHEEKSNLSAGKSAMAASS 187

[Close]

BLAST of Cucsa.374630 vs. TAIR10
Match: AT1G17590.1 (AT1G17590.1 nuclear factor Y, subunit A8)

HSP 1 Score: 111.3 bits (277), Expect = 5.8e-25
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 1


Query: 22  ANTSYAYHDPSYGGLLSPFGF---QTMHNSDYSRMALPLAMAE-EPVYVNAKQYHGILRR 81
           AN S+ Y DP +GGL+ P  +    T+ N   +R+ LP  + E EPV+VNAKQ+H I+RR
Sbjct: 129 ANFSFHYADPHFGGLM-PAAYLPQATIWNPQMTRVPLPFDLIENEPVFVNAKQFHAIMRR 188

Query: 82  RQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKNKKAEASSLLDD 134
           RQ RAK E +NK+ ++ RKPYLHESRH+HA++R RG GGRFL+  K  E++    D
Sbjct: 189 RQQRAKLEAQNKLIKA-RKPYLHESRHVHALKRPRGSGGRFLNTKKLQESTDPKQD 242

[Close]

BLAST of Cucsa.374630 vs. TAIR10
Match: AT1G72830.2 (AT1G72830.2 nuclear factor Y, subunit A3)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-24
Identity = 58/115 (50.43%), Postives = 76/115 (66.09%), Query Frame = 1


Query: 22  ANTSYAYHDPSYGGLLS-------PFGFQTMHNSDYSRMALPLAMAE-EPVYVNAKQYHG 81
           AN S+ Y DP YGGLL+       P     M +    R+ LP  + E +PV+VNAKQYH 
Sbjct: 131 ANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHA 190

Query: 82  ILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKNKKAEAS 129
           I+RRRQ RAK E +NK+ R+++ PYLHESRH+HA++R RG GGRFL+  K  + S
Sbjct: 191 IMRRRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGGRFLNTKKLLQES 245

[Close]

BLAST of Cucsa.374630 vs. NCBI nr
Match: gi|449465501|ref|XP_004150466.1| (PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 8.2e-90
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 1


Query: 1   MNNEHYHASTSQSELLTLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMA 60
           MNNEHYHASTSQSELL+LSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMA
Sbjct: 99  MNNEHYHASTSQSELLSLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMA 158

Query: 61  EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 120
           EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS
Sbjct: 159 EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 218

Query: 121 KNKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 167
           KNKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI
Sbjct: 219 KNKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 264

[Close]

BLAST of Cucsa.374630 vs. NCBI nr
Match: gi|700198675|gb|KGN53833.1| (hypothetical protein Csa_4G159320 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 8.2e-90
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 1


Query: 1   MNNEHYHASTSQSELLTLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMA 60
           MNNEHYHASTSQSELL+LSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMA
Sbjct: 179 MNNEHYHASTSQSELLSLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMA 238

Query: 61  EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 120
           EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS
Sbjct: 239 EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 298

Query: 121 KNKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 167
           KNKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI
Sbjct: 299 KNKKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 344

[Close]

BLAST of Cucsa.374630 vs. NCBI nr
Match: gi|659121698|ref|XP_008460780.1| (PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis melo])

HSP 1 Score: 306.2 bits (783), Expect = 3.5e-80
Identity = 155/172 (90.12%), Postives = 157/172 (91.28%), Query Frame = 1


Query: 1   MNNEHYHASTSQSELLTLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRM-----AL 60
           MNNEHYHASTSQ ELLTLSMT +TSY YHDPSYGGL SPF FQTMHNSDYSRM     AL
Sbjct: 94  MNNEHYHASTSQPELLTLSMTTDTSYTYHDPSYGGLPSPFEFQTMHNSDYSRMAQARMAL 153

Query: 61  PLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCG 120
           PLAMAEEPVYVNAKQYHGILRRRQSRAKAEVEN+ISRSQRKPYLHESRHLHAMRRERGCG
Sbjct: 154 PLAMAEEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMRRERGCG 213

Query: 121 GRFLSKNKKAEAS-SLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 167
           GRFLSK KK EAS SL DDDDGEGSNISLGSESMCNGS CYQGSQLHLSAYI
Sbjct: 214 GRFLSKKKKVEASTSLDDDDDGEGSNISLGSESMCNGSNCYQGSQLHLSAYI 265

[Close]

BLAST of Cucsa.374630 vs. NCBI nr
Match: gi|645250566|ref|XP_008231270.1| (PREDICTED: nuclear transcription factor Y subunit A-1-like [Prunus mume])

HSP 1 Score: 150.6 bits (379), Expect = 2.4e-33
Identity = 82/152 (53.95%), Postives = 99/152 (65.13%), Query Frame = 1


Query: 6   YHASTSQSELLTLSMTANTSYAYHDPSYGGLLSPFGFQTM-----HNSDYSRMALPLAMA 65
           +H   SQ EL+       TSY Y DP YGG+L+P+G Q M     +   + RM LPL M 
Sbjct: 113 HHDPNSQMELVL------TSYPYSDPQYGGMLTPYGAQAMLPPHFYGIHHGRMPLPLEME 172

Query: 66  EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 125
           EEPVYVNAKQYHGILRRRQSRAK E+E K+ ++ RKPYLHESRHLHA+RR RGCGGRFL+
Sbjct: 173 EEPVYVNAKQYHGILRRRQSRAKTELEKKLIKA-RKPYLHESRHLHALRRARGCGGRFLN 232

Query: 126 KNKKAEASSLLDDDDGEGSNISLGSESMCNGS 153
             K+        DD+ E S++  G     N S
Sbjct: 233 TKKQ--------DDNDENSSLEKGMNLDANDS 249

[Close]

BLAST of Cucsa.374630 vs. NCBI nr
Match: gi|823151231|ref|XP_012475442.1| (PREDICTED: nuclear transcription factor Y subunit A-4-like [Gossypium raimondii])

HSP 1 Score: 149.1 bits (375), Expect = 7.1e-33
Identity = 82/155 (52.90%), Postives = 105/155 (67.74%), Query Frame = 1


Query: 6   YHASTSQSELLTLSMTANTSYAYHDPSYGGLLSPFGFQTM-----HNSDYSRMALPLAMA 65
           +H   SQ EL+  S+   TSY Y DP YGG+L+ +G Q M     +   ++RM LPL M 
Sbjct: 96  HHEPNSQMELVGHSIVL-TSYPYSDPQYGGMLTSYGPQMMVSPHLYGMHHARMPLPLQME 155

Query: 66  EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLS 125
           EEPVYVNAKQYHGILRRRQ RAKAE+E K  +  RKPYLHESRHLHAMRR RGCGGRFL+
Sbjct: 156 EEPVYVNAKQYHGILRRRQIRAKAELEKKAIKI-RKPYLHESRHLHAMRRARGCGGRFLN 215

Query: 126 KNKKAEASSLLDDDDGEGSNISLGSE-SMCNGSKC 155
             K+ +  +      G  S+ ++ ++ S+ +GS+C
Sbjct: 216 TKKQGDDVTSPTSQKGMNSDENISTKSSILSGSEC 248

The following BLAST results are available for this feature:

BLAST of Cucsa.374630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYA1_ARATH	2.6e-27	53.44	Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2...	[more]
NFYA9_ARATH	5.8e-27	43.58	Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2...	[more]
NFYA7_ARATH	1.7e-26	46.50	Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2...	[more]
NFYA8_ARATH	1.0e-23	50.86	Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2...	[more]
NFYA3_ARATH	5.1e-23	52.17	Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2...	[more]

BLAST of Cucsa.374630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWA0_CUCSA	5.7e-90	99.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G159320 PE=4 SV=1	[more]
A0A0B0PEQ5_GOSAR	4.9e-33	52.90	Nuclear transcription factor Y subunit A-1-like protein OS=Gossypium arboreum GN...	[more]
A0A0D2PDJ8_GOSRA	4.9e-33	52.90	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G172100 PE=4 SV=1	[more]
A0A0D6QYF4_ARACU	9.3e-32	56.12	Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1	[more]
A0A061EY16_THECC	9.3e-32	56.55	Nuclear factor Y, putative OS=Theobroma cacao GN=TCM_024732 PE=4 SV=1	[more]

BLAST of Cucsa.374630 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12840.1	1.5e-28	53.44	nuclear factor Y, subunit A1	[more]
AT3G20910.1	3.3e-28	43.58	nuclear factor Y, subunit A9	[more]
AT1G30500.2	9.5e-28	46.50	nuclear factor Y, subunit A7	[more]
AT1G17590.1	5.8e-25	50.86	nuclear factor Y, subunit A8	[more]
AT1G72830.2	1.3e-24	50.43	nuclear factor Y, subunit A3	[more]

BLAST of Cucsa.374630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465501\|ref\|XP_004150466.1\|	8.2e-90	99.40	PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis sativus]	[more]
gi\|700198675\|gb\|KGN53833.1\|	8.2e-90	99.40	hypothetical protein Csa_4G159320 [Cucumis sativus]	[more]
gi\|659121698\|ref\|XP_008460780.1\|	3.5e-80	90.12	PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis melo]	[more]
gi\|645250566\|ref\|XP_008231270.1\|	2.4e-33	53.95	PREDICTED: nuclear transcription factor Y subunit A-1-like [Prunus mume]	[more]
gi\|823151231\|ref\|XP_012475442.1\|	7.1e-33	52.90	PREDICTED: nuclear transcription factor Y subunit A-4-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001289	NFYA
IPR018362	CCAAT-binding_factor_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0016602	CCAAT-binding factor complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.374630.1	Cucsa.374630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001289	Nuclear transcription factor Y subunit A	PRINTS	PR00616	CCAATSUBUNTB	coord: 63..85 score: 2.2E-24coord: 95..118 score: 2.2
IPR001289	Nuclear transcription factor Y subunit A	PANTHER	PTHR12632	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	coord: 11..147 score: 2.6
IPR001289	Nuclear transcription factor Y subunit A	PFAM	PF02045	CBFB_NFYA	coord: 62..118 score: 1.2
IPR001289	Nuclear transcription factor Y subunit A	SMART	SM00521	cbf3	coord: 59..121 score: 1.0
IPR001289	Nuclear transcription factor Y subunit A	PROFILE	PS51152	NFYA_HAP2_2	coord: 60..121 score: 38
IPR018362	CCAAT-binding factor, conserved site	PROSITE	PS00686	NFYA_HAP2_1	coord: 65..85 scor
None	No IPR available	unknown	Coil	Coil	coord: 76..96 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.374630	Csa4G159320	Cucumber (Chinese Long) v2	cgycuB524
Cucsa.374630	MELO3C023161	Melon (DHL92) v3.5.1	cgymeB608
Cucsa.374630	ClCG04G000250	Watermelon (Charleston Gray)	cgywcgB639
Cucsa.374630	CSPI04G10460	Wild cucumber (PI 183967)	cgycpiB553
Cucsa.374630	Lsi01G018770	Bottle gourd (USVL1VR-Ls)	cgylsiB606
Cucsa.374630	MELO3C023161.2	Melon (DHL92) v3.6.1	cgymedB605
Cucsa.374630	CsaV3_4G011610	Cucumber (Chinese Long) v3	cgycucB568
Cucsa.374630	Cla97C04G068610	Watermelon (97103) v2	cgywmbB643

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None