Cp4.1LG10g11710 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g11710
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNuclear transcription factor Y subunit
LocationCp4.1LG10 : 8668910 .. 8672945 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTATTTTTACCTAAACTTTCAATAATAGACCTAAAAAAAAAGATTAAATGGGGGAGCAAGATTAAGACGTCTCCTTCACTATTAATCCCTTTCTCTTTCACATATGGTACAATTTCAATCTCTGTTTCTCTCCCAAGAAAATTTTCTTTCCTTGAAATCTAGAATTTTCTCACCTCCCAAACACTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATAAACAATATCATTTTCCTTGGAATTCCAGAATTTTCTCACCTCCCAAACACTCCTCTCTCTCTACACTGTGAGTTCTTTCTCTCTATTTCTCTCTTTTAAGTGTATTTGGTAAATGGGTATCAGTTTGGTTTACAAAATTCACTTTCTTTTTCATAATCTCTTCATTTTCTTGGCTTCCAAACACTGATCTTATCATTTATTGCTTTGCTTTGATTTGATTTGCTTGCTTGCTTTTGATTCTTATTTGGTTTGTAGTTCTAGAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAATTGTATGTATGTATGTGTGCATGCATGGATTAATATGGATCTATATATAATCCAATGTTTTTGCTATAAATAATATTATCATTTGAGAAAAATAAATTAGAACCTTACACTTATGCATCAATTAATTAAAAATCGTTAATTTTGGTTTGGGTACTCTTAAAAAGTTTAAAATGGTCACGTTCATTAATTTCGAGGATCAAAATAAGCTAACAGTCAAAAGTATGATACCGAGTAGTATTTAAACGGTTATTTTTTTCCATTTTTTTAAAATTTTTTTGACGTTTTTTGTTTTTTTTTTTTGTTTTTTCATTTGGTTCTTTAGAGAAGACTACAAATGATGAGCTCTAAAACAAATTACAGAAACCGTCTAGAAAGTTACAATCCTCAACTTTCGTGGGGGCTAGGTGCTCCCACGATACTCGACATCTCAAAGGAAGACAAAGTAAACATCTCAAAGGAAGACAAAGTAAATTGGGCTTGGCCCAACGGGTTGGTTGACATTGGGCCACAGCCCAATAGAAGCACCAAGGAAGTGCAAGAAACTATGGCTCCACCTCCATGTAAGGTTTAAATACATGTTTTACTTGATGATTCCATCAAGTTTATATTGTTTTTCTTTAAAGTTTTGTTCGTGATATTTTACAAAATTCAATCTTGTTATTTTTCTTTATAGTTAATACCAATGAAAATGAGTATTAGAAATGGAGATTTGAGACCTTACCTATCACCTAATGTTATAATAGAGATGTTCGTTTAACCCGACTCGTAAGACTGAGGCTCTGTGGGAACTTGACTCGAACAGGGGCGGAGAATCTTTCTTTGAATTGGGAATGAAAGAGGGATTAAGAACATAATTTTCCACCCTTAGCTAAACAGGGTCGAGATGGGGATTACATTATTTGTCCCTGACCTCGGCCTCAACCCCGCCTCCATCCTTGCCCGATCCTGCATCCTCTCACTTTCATTATAGATATATGAATTGTTTATCATCACGATAGATGTCAAATGGAAATACAGTGATGTATGCAACTGAAACATTTTAACAGAACGGTAGACTTGAACCTTTTATATATATTTACTTAGTATATTATATTATATTTTTCCCTTATAAAATATTTTTGATTAAATGAAAATTATTGGTTAAAAGTTTACTTCAAAGGAGTATTTTTTAAAATATATATGCAAATGAGATAAATTTCTCGCAAAAATCTGATCCTCAAGAAATCTTCGTTACAATCTCTACAAAAATAAATAGAGAAATTTATAGAAACAAAGAATGAAATAAGAAGTAGAGACAGAGACAGAGACGAGCTTTCCTTTCCTGTTTGGGTGAAATCTCTATATTATGAAAATGATAAGTTTTGATATGAGCAGATGGAGAATTGGTAGTAGCATGTCAGAGTAAAGATGCATCCATTGTTCTTCCATTGATGAATAATGAACACTATGAGGCTTCTACTCATGAGGTTGTTACCCTTTCAATGGTCCTCTCTATCTCTAAAAATAAAAAACTAATGGTTTCCATTTATAGCAGACAACAGCTACATCCTACCAATACAAAGACGTTTACTATGGACAACTGATGCCTCCATTTGGATTCCAAACATTGGTACGAGTATCTAATAATGTTTTCGTTTTCTCTTCGTTCCTATATTGAGAAAATTCGATTATTTACGTGTATATAAACTGTGAGTCAATAACCTTGACTTGTACATGATTTTTCAGTCTTTACTCGGATTATTAATCGTGGAGTATTGATAGCAGATATTATTAATCGTAAAACATTTCTATGAGAAATTATTAACATATATAAGCGAAGAATTGTTAGTGTAATTGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGTATAAGAGCTTACAAAAGTTCTCATGCCAATGAAGAGAGTATTCCTTCGTTATAAACCCTTATAAATCTATGACCATTCCCTAAATTAGCGCCATGTGGGACTTTCATCATCCAACACCTCCCCTTGAACAATGTGGACGCCTCCACTTAATTGAGGCTCGACTCCTTTTTCTTTTGGAGTCTTAGTCATTTTTTTACTATGCCTTTGAGGAGGCTCGACTTCTTTTCTTTTAGAGTCTTTTGTTCGGCATTTGAGGATTTACCAATCATTTATCAATCTATTGGCACGACTAAGTTTAGGGCATGACTCTGATACCATGTAGAAATCACGACTCTCCACAATGGTATGATATTGTCCACTTCGAGTATAAGCTCTCATGGCTTTGCTTTGAGCTTCCCAAAAGGCCTCATACCAATGGGGGAGAGTATTCCTTCATTATAAATCCATGACCATTCCCTAAATTAGCCGATGTGAGACTTTCATCATCCAACACCTCCCCTCGAACAATTCCCCTCGAACAATGTGGACGCCTCCCTTTAATCGAGGCTCGACTTCTTTTTCTTTTACAGTCTTAGTCATTTTTTTACTATGCCTTTGAGGAGGTTATTCGAGAGCTCCATAAGCCTCAGGGGAGACTTATAGTATATACTTTGTTCGAGGGGGAGAATTGTTGAGGATTATTGGGAGTGAGTCTCACGGGTTAATTTAGTGGTAGATCATGGGTTTATAAGTGAGGCTTTTTGGGAAGCCCAAAGCAAAAACCATAAGAACTTATGCTCAAAGTAGACAATATCATATCATTGTGGAGAGTCGTGTTCGTCTAACCGTTTTCCCCCTTTAGATAGCCATAGGATGATGGAAGGTCAAAACCAACCTAAACCACTTATTTTACGACCCATGATCCATTTCGTAGCTGAATTTGATATTTTGATGCTATGAAAGCCTAAAGGTTGGTTGTTACACAGCATAATTCAGAATATACCAGAATGACTTTGCCTCTAGCGATGGCCGAAGAACCTGTTTACGTGAATGCCAAACAGTACCATGGAATACTACGTCGACGACAATCCCGAGCCAAGGCCGAGGTCTTAAACAAGATATCTAGATCACAAAAAAAGGTAATCAAACAACCAACTCACAGCTTCCCAATTATATATATAAATCTCGAACTTATCTTTTGTTGTGTAACTAATACGTGCGAGTATCGCAGCCCTATCTTCACGAGTCGAGACACCTACACGCCATGAGAAGGGAAAGGGGCTGCAGAGGCCGTTTCGTGAGCAAGAAGAAGATGGCAGAACCTATAGCTTCAATGGCTGATGATGGCAAAGGCAGCAACATGTCCAGCAATTGCTATCAAGGTTCCGAACTACATCTATCTGCATATATATGATCGTCTAAGAGGTTAAGGGTTCGAAAACAGCTTCTCCCATTTCTTTCGGTACTTCGGAAGATGAACTCGGAATATACGCGTTAGTACCAGTCTACCTTAATAATTAGCCTATACTTTTTTCTTTAAAGTCGGAAGTTCAAATGTGTAAATGTTGATAGAAATGTGGAGGTTTTAAAAGTTTATGAATATATCAAATATTAGAAAAAGTATAGAAATCAAGAACTTATAATGATTGAA

mRNA sequence

AGTATTTTTACCTAAACTTTCAATAATAGACCTAAAAAAAAAGATTAAATGGGGGAGCAAGATTAAGACGTCTCCTTCACTATTAATCCCTTTCTCTTTCACATATGGTACAATTTCAATCTCTGTTTCTCTCCCAAGAAAATTTTCTTTCCTTGAAATCTAGAATTTTCTCACCTCCCAAACACTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATAAACAATATCATTTTCCTTGGAATTCCAGAATTTTCTCACCTCCCAAACACTCCTCTCTCTCTACACTAAACCGTCTAGAAAGTTACAATCCTCAACTTTCGTGGGGGCTAGGTGCTCCCACGATACTCGACATCTCAAAGGAAGACAAAGTAAACATCTCAAAGGAAGACAAAGTAAATTGGGCTTGGCCCAACGGGTTGGTTGACATTGGGCCACAGCCCAATAGAAGCACCAAGGAAGTGCAAGAAACTATGGCTCCACCTCCATATGGAGAATTGGTAGTAGCATGTCAGAGTAAAGATGCATCCATTGTTCTTCCATTGATGAATAATGAACACTATGAGGCTTCTACTCATGAGACAACAGCTACATCCTACCAATACAAAGACGTTTACTATGGACAACTGATGCCTCCATTTGGATTCCAAACATTGCATAATTCAGAATATACCAGAATGACTTTGCCTCTAGCGATGGCCGAAGAACCTGTTTACGTGAATGCCAAACAGTACCATGGAATACTACGTCGACGACAATCCCGAGCCAAGGCCGAGGTCTTAAACAAGATATCTAGATCACAAAAAAAGCCCTATCTTCACGAGTCGAGACACCTACACGCCATGAGAAGGGAAAGGGGCTGCAGAGGCCGTTTCGTGAGCAAGAAGAAGATGGCAGAACCTATAGCTTCAATGGCTGATGATGGCAAAGGCAGCAACATGTCCAGCAATTGCTATCAAGGTTCCGAACTACATCTATCTGCATATATATGATCGTCTAAGAGGTTAAGGGTTCGAAAACAGCTTCTCCCATTTCTTTCGGTACTTCGGAAGATGAACTCGGAATATACGCGTTAGTACCAGTCTACCTTAATAATTAGCCTATACTTTTTTCTTTAAAGTCGGAAGTTCAAATGTGTAAATGTTGATAGAAATGTGGAGGTTTTAAAAGTTTATGAATATATCAAATATTAGAAAAAGTATAGAAATCAAGAACTTATAATGATTGAA

Coding sequence (CDS)

ATGGTACAATTTCAATCTCTGTTTCTCTCCCAAGAAAATTTTCTTTCCTTGAAATCTAGAATTTTCTCACCTCCCAAACACTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATAAACAATATCATTTTCCTTGGAATTCCAGAATTTTCTCACCTCCCAAACACTCCTCTCTCTCTACACTAAACCGTCTAGAAAGTTACAATCCTCAACTTTCGTGGGGGCTAGGTGCTCCCACGATACTCGACATCTCAAAGGAAGACAAAGTAAACATCTCAAAGGAAGACAAAGTAAATTGGGCTTGGCCCAACGGGTTGGTTGACATTGGGCCACAGCCCAATAGAAGCACCAAGGAAGTGCAAGAAACTATGGCTCCACCTCCATATGGAGAATTGGTAGTAGCATGTCAGAGTAAAGATGCATCCATTGTTCTTCCATTGATGAATAATGAACACTATGAGGCTTCTACTCATGAGACAACAGCTACATCCTACCAATACAAAGACGTTTACTATGGACAACTGATGCCTCCATTTGGATTCCAAACATTGCATAATTCAGAATATACCAGAATGACTTTGCCTCTAGCGATGGCCGAAGAACCTGTTTACGTGAATGCCAAACAGTACCATGGAATACTACGTCGACGACAATCCCGAGCCAAGGCCGAGGTCTTAAACAAGATATCTAGATCACAAAAAAAGCCCTATCTTCACGAGTCGAGACACCTACACGCCATGAGAAGGGAAAGGGGCTGCAGAGGCCGTTTCGTGAGCAAGAAGAAGATGGCAGAACCTATAGCTTCAATGGCTGATGATGGCAAAGGCAGCAACATGTCCAGCAATTGCTATCAAGGTTCCGAACTACATCTATCTGCATATATATGA

Protein sequence

MVQFQSLFLSQENFLSLKSRIFSPPKHSSLSLSLSLSLSYKQYHFPWNSRIFSPPKHSSLSTLNRLESYNPQLSWGLGAPTILDISKEDKVNISKEDKVNWAWPNGLVDIGPQPNRSTKEVQETMAPPPYGELVVACQSKDASIVLPLMNNEHYEASTHETTATSYQYKDVYYGQLMPPFGFQTLHNSEYTRMTLPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKMAEPIASMADDGKGSNMSSNCYQGSELHLSAYI
Homology
[Close]
BLAST of Cp4.1LG10g11710 vs. Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-23
Identity = 87/214 (40.65%), Postives = 108/214 (50.47%), Query Frame = 1 

Query: 105 NGLVDIGPQPNRSTKEVQETMAPPPYGELVVACQ-SKDASIVLPLMNNEHYEASTHETT- 164
           NG      + N   KE Q T +P   G+     Q S    I  P     H +   H    
Sbjct: 65  NGSKSPSNRDNTVNKESQVTTSPQSAGDYSDKNQESLHHGITQP---PPHPQLVGHTVGW 124

Query: 165 ATSYQYKDVYYGQLMP-----PFGFQTLHNSEYTRMTLPLAMAEEPVYVNAKQYHGILRR 224
           A+S  Y+D YY  +M      P GF       ++RM LP  MA+EPV+VNAKQY  ILRR
Sbjct: 125 ASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRR 184

Query: 225 RQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSK------KKMAE----- 284
           RQ+RAKAE+  K+ +S +KPYLHESRH HAMRR RG  GRF  K      K+ AE     
Sbjct: 185 RQARAKAELEKKLIKS-RKPYLHESRHQHAMRRPRGTGGRFAKKTNTEASKRKAEEKSNG 244

Query: 285 -----PIASMADDGKGSNMSSNCYQGSELHLSAY 296
                P +S +D G+  N      QG E+  SAY
Sbjct: 245 HVTQSPSSSNSDQGEAWNGDYRTPQGDEMQSSAY 274

[Close]
BLAST of Cp4.1LG10g11710 vs. Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-21
Identity = 69/137 (50.36%), Postives = 82/137 (59.85%), Query Frame = 1 

Query: 159 HETTATSYQYKDVYYGQLMPPFGFQTLHNSEYT-----RMTLPLAMAEEPVYVNAKQYHG 218
           H        Y+D YYG LM  +G Q L    Y      R  LPL MA+EPVYVNAKQY G
Sbjct: 124 HYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEG 183

Query: 219 ILRRRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKM-AEPIASMA 278
           ILRRR++RAKAE+  K+ R  +KPYLHESRH HAMRR R   GRF  K ++ A   A   
Sbjct: 184 ILRRRKARAKAELERKVIRD-RKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAGGR 243

Query: 279 DDGKGSNMSSNCYQGSE 290
           D  +GS  +S+   GSE
Sbjct: 244 DRERGSATNSS---GSE 256

[Close]
BLAST of Cp4.1LG10g11710 vs. Swiss-Prot
Match: NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21
Identity = 67/162 (41.36%), Postives = 93/162 (57.41%), Query Frame = 1 

Query: 138 QSKDASIVLPLMNNEHYEA-----------STHETTATSYQYKDVYYGQLM--PPFGFQT 197
           + +D+    P+ +  +YE+           +T+      Y Y D YY  +   PP  +  
Sbjct: 19  EQRDSHFQPPIPSARNYESIVTSLVYSDPGTTNSMAPGQYPYPDPYYRSIFAPPPQPYTG 78

Query: 198 LH----NSEYTRMTLPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVLNKISRSQKKPYLH 257
           +H      +   + LP    EEPV+VNAKQYHGILRRRQSRA+ E  NK+ +S +KPYLH
Sbjct: 79  VHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKS-RKPYLH 138

Query: 258 ESRHLHAMRRERGCRGRFVSKKKMAEPIASMADDGKGSNMSS 283
           ESRHLHA+RR RGC GRF++ KK  E     + + K SN+S+
Sbjct: 139 ESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEK-SNLSA 178

[Close]
BLAST of Cp4.1LG10g11710 vs. Swiss-Prot
Match: NFYA8_ARATH (Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-20
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 1 

Query: 165 SYQYKDVYYGQLMPPFGFQ--TLHNSEYTRMTLPLAMAE-EPVYVNAKQYHGILRRRQSR 224
           S+ Y D ++G LMP       T+ N + TR+ LP  + E EPV+VNAKQ+H I+RRRQ R
Sbjct: 132 SFHYADPHFGGLMPAAYLPQATIWNPQMTRVPLPFDLIENEPVFVNAKQFHAIMRRRQQR 191

Query: 225 AKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKMAE 267
           AK E  NK+ ++ +KPYLHESRH+HA++R RG  GRF++ KK+ E
Sbjct: 192 AKLEAQNKLIKA-RKPYLHESRHVHALKRPRGSGGRFLNTKKLQE 235

[Close]
BLAST of Cp4.1LG10g11710 vs. Swiss-Prot
Match: NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-18
Identity = 56/107 (52.34%), Postives = 67/107 (62.62%), Query Frame = 1 

Query: 166 YQYKDVYYGQLM--------PPFGFQT-LHNSEYTRMTLPLAMAEEPVYVNAKQYHGILR 225
           Y Y D YY  +         P  G Q  L   +   + L     EEPV+VNAKQYHGILR
Sbjct: 53  YPYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILR 112

Query: 226 RRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKK 264
           RRQSRAK E  N+  ++ KKPY+HESRHLHA+RR RGC GRF++ KK
Sbjct: 113 RRQSRAKLEARNRAIKA-KKPYMHESRHLHAIRRPRGCGGRFLNAKK 158

[Close]
BLAST of Cp4.1LG10g11710 vs. TrEMBL
Match: A0A0A0KWA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G159320 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.9e-64
Identity = 141/224 (62.95%), Postives = 160/224 (71.43%), Query Frame = 1 

Query: 95  KEDKVNWAWPNGLVDIGPQPNRSTKEVQETMAPP----PYGELVVACQSKDASIVLPLMN 154
           KE+K NWAWP  LVD  P+   STKE+  T++      PY       +S+D S VLP MN
Sbjct: 128 KEEKRNWAWPKPLVDSQPEHKTSTKELHITLSGVGPTLPY-------KSRDVSTVLPFMN 187

Query: 155 NEHYEASTHE--------TTATSYQYKDVYYGQLMPPFGFQTLHNSEYTRMTLPLAMAEE 214
           NEHY AST +        T  TSY Y D  YG L+ PFGFQT+HNS+Y+RM LPLAMAEE
Sbjct: 188 NEHYHASTSQSELLSLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMAEE 247

Query: 215 PVYVNAKQYHGILRRRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKK 274
           PVYVNAKQYHGILRRRQSRAKAEV NKISRSQ+KPYLHESRHLHAMRRERGC GRF+SK 
Sbjct: 248 PVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKN 307

Query: 275 KMAEPIASM-ADDGKGSNMS---------SNCYQGSELHLSAYI 297
           K AE  + +  DDG+GSN+S         S CYQGS+LHLSAYI
Sbjct: 308 KKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 344

[Close]
BLAST of Cp4.1LG10g11710 vs. TrEMBL
Match: A0A061EY16_THECC (Nuclear factor Y, putative OS=Theobroma cacao GN=TCM_024732 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 79/130 (60.77%), Postives = 91/130 (70.00%), Query Frame = 1 

Query: 159 HETTATSYQYKDVYYGQLMPPFGFQTLHNSEY-----TRMTLPLAMAEEPVYVNAKQYHG 218
           H     SY Y D YYG  MPP+G Q+L +         RM LPL MAEEPVYVNAKQYHG
Sbjct: 127 HSIACPSYPYADPYYGGAMPPYGPQSLVHPHCLGVHPARMALPLEMAEEPVYVNAKQYHG 186

Query: 219 ILRRRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKMAEPIASMAD 278
           ILRRRQSRAKAE+  K+ +  +KPYLHESRHLHAMRR RGC GRF++ KK+ +  AS A 
Sbjct: 187 ILRRRQSRAKAELEKKLIKV-RKPYLHESRHLHAMRRARGCGGRFLNTKKL-DSDASNAT 246

Query: 279 DGKGSNMSSN 284
             KGS+ SSN
Sbjct: 247 PDKGSDTSSN 254

[Close]
BLAST of Cp4.1LG10g11710 vs. TrEMBL
Match: A0A0D2Q705_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G151800 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.0e-28
Identity = 88/183 (48.09%), Postives = 108/183 (59.02%), Query Frame = 1 

Query: 117 STKEVQETMAPPPYGELVVACQSKDA------SIVLPLMNN-----EHYEASTHETTATS 176
           S+KE+  T+ P P G+    C  +         I+ P M          E   H     S
Sbjct: 78  SSKEMPLTIFPHPDGK----CGDEQPYLQHAIPIIRPTMGEYVPPEPQLELVGHSIACPS 137

Query: 177 YQYKDVYYGQLMPPFGFQTLHNSEY-----TRMTLPLAMAEEPVYVNAKQYHGILRRRQS 236
           Y Y D YYG ++PP+  Q+L +S        RM LPL MAEEPVYVNAKQYHGILRRRQS
Sbjct: 138 YPYTDPYYGGVVPPYVPQSLVHSHSLGVHPARMALPLEMAEEPVYVNAKQYHGILRRRQS 197

Query: 237 RAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKMAEPIASMADDGKGSNM 284
           RAKAE+  K+ +  +KPYLHESRHLHAMRR RGC GRF++ KK+ +  AS A   K S+ 
Sbjct: 198 RAKAELEKKLIKV-RKPYLHESRHLHAMRRARGCGGRFLNTKKL-DSDASKATPNKSSDT 254

[Close]
BLAST of Cp4.1LG10g11710 vs. TrEMBL
Match: A0A0R0H9H0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G236800 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.2e-27
Identity = 84/202 (41.58%), Postives = 111/202 (54.95%), Query Frame = 1 

Query: 88  EDKVNISKEDKVNWAWPNGLVDIGPQPNRSTKEVQETMAPPPYGELVVACQSKDASIVLP 147
           E+    S +D++N +  NG+          T +         Y  +  A  S   ++   
Sbjct: 37  ENASKSSSDDQLNGSIVNGIT------RSETNDKSGGGVAKEYQNIKHAMLSTPFTMEKH 96

Query: 148 LMNNEHYEASTHETTATSYQYKDVYYGQLMPPFGFQT-LHNSEYTRMTLPLAMAEEPVYV 207
           L  N   E   H    TS  Y D  YGQ++  +G Q  L+   + RM LPL M EEPVYV
Sbjct: 97  LAPNPQMELVGHSVVLTS-PYSDAQYGQILTTYGQQVMLYGMHHARMPLPLEMEEEPVYV 156

Query: 208 NAKQYHGILRRRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKMAE 267
           NAKQYHGILRRRQSRAKAE+  K+ ++ +KPYLHESRHLHAMRR RG  GRF++ KK+  
Sbjct: 157 NAKQYHGILRRRQSRAKAEIEKKVIKN-RKPYLHESRHLHAMRRARGNGGRFLNTKKLEN 216

Query: 268 PIASMADDGKGSNMSSNCYQGS 289
             ++   D KG+N  +N    S
Sbjct: 217 NNSNSTSD-KGNNTRANASTNS 229

[Close]
BLAST of Cp4.1LG10g11710 vs. TrEMBL
Match: A0A151TPS3_CAJCA (Nuclear transcription factor Y subunit A-1 OS=Cajanus cajan GN=KK1_022693 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.2e-27
Identity = 77/144 (53.47%), Postives = 94/144 (65.28%), Query Frame = 1 

Query: 148 LMNNEHYEASTHETTATSYQYKDVYYGQLMPPFGFQTLHNSE-----YTRMTLPLAMAEE 207
           L  N H E   H    TS  Y D  YGQ+ P +G QT+ N +     + RM LPL M EE
Sbjct: 112 LAPNPHMELVGHSVVLTS-PYSDAQYGQIFPTYGQQTMINPQLYGMHHARMPLPLEMEEE 171

Query: 208 PVYVNAKQYHGILRRRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKK 267
           PVYVNAKQYHGILRRRQSRAKAE+  K+ ++ +KPYLHESRHLHAMRR RG  GRF++ K
Sbjct: 172 PVYVNAKQYHGILRRRQSRAKAELEKKVVKN-RKPYLHESRHLHAMRRARGNGGRFLNTK 231

Query: 268 KMA-EPIASMADDGK--GSNMSSN 284
           K+      + +D+G   G+N S N
Sbjct: 232 KLENNDCIATSDEGNDIGANSSMN 253

[Close]
BLAST of Cp4.1LG10g11710 vs. TAIR10
Match: AT3G20910.1 (AT3G20910.1 nuclear factor Y, subunit A9)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-24
Identity = 87/214 (40.65%), Postives = 108/214 (50.47%), Query Frame = 1 

Query: 105 NGLVDIGPQPNRSTKEVQETMAPPPYGELVVACQ-SKDASIVLPLMNNEHYEASTHETT- 164
           NG      + N   KE Q T +P   G+     Q S    I  P     H +   H    
Sbjct: 65  NGSKSPSNRDNTVNKESQVTTSPQSAGDYSDKNQESLHHGITQP---PPHPQLVGHTVGW 124

Query: 165 ATSYQYKDVYYGQLMP-----PFGFQTLHNSEYTRMTLPLAMAEEPVYVNAKQYHGILRR 224
           A+S  Y+D YY  +M      P GF       ++RM LP  MA+EPV+VNAKQY  ILRR
Sbjct: 125 ASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRR 184

Query: 225 RQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSK------KKMAE----- 284
           RQ+RAKAE+  K+ +S +KPYLHESRH HAMRR RG  GRF  K      K+ AE     
Sbjct: 185 RQARAKAELEKKLIKS-RKPYLHESRHQHAMRRPRGTGGRFAKKTNTEASKRKAEEKSNG 244

Query: 285 -----PIASMADDGKGSNMSSNCYQGSELHLSAY 296
                P +S +D G+  N      QG E+  SAY
Sbjct: 245 HVTQSPSSSNSDQGEAWNGDYRTPQGDEMQSSAY 274

[Close]
BLAST of Cp4.1LG10g11710 vs. TAIR10
Match: AT5G12840.1 (AT5G12840.1 nuclear factor Y, subunit A1)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-23
Identity = 69/137 (50.36%), Postives = 82/137 (59.85%), Query Frame = 1 

Query: 159 HETTATSYQYKDVYYGQLMPPFGFQTLHNSEYT-----RMTLPLAMAEEPVYVNAKQYHG 218
           H        Y+D YYG LM  +G Q L    Y      R  LPL MA+EPVYVNAKQY G
Sbjct: 124 HYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEG 183

Query: 219 ILRRRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKM-AEPIASMA 278
           ILRRR++RAKAE+  K+ R  +KPYLHESRH HAMRR R   GRF  K ++ A   A   
Sbjct: 184 ILRRRKARAKAELERKVIRD-RKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAGGR 243

Query: 279 DDGKGSNMSSNCYQGSE 290
           D  +GS  +S+   GSE
Sbjct: 244 DRERGSATNSS---GSE 256

[Close]
BLAST of Cp4.1LG10g11710 vs. TAIR10
Match: AT1G30500.2 (AT1G30500.2 nuclear factor Y, subunit A7)

HSP 1 Score: 105.1 bits (261), Expect = 7.3e-23
Identity = 67/162 (41.36%), Postives = 93/162 (57.41%), Query Frame = 1 

Query: 138 QSKDASIVLPLMNNEHYEA-----------STHETTATSYQYKDVYYGQLM--PPFGFQT 197
           + +D+    P+ +  +YE+           +T+      Y Y D YY  +   PP  +  
Sbjct: 19  EQRDSHFQPPIPSARNYESIVTSLVYSDPGTTNSMAPGQYPYPDPYYRSIFAPPPQPYTG 78

Query: 198 LH----NSEYTRMTLPLAMAEEPVYVNAKQYHGILRRRQSRAKAEVLNKISRSQKKPYLH 257
           +H      +   + LP    EEPV+VNAKQYHGILRRRQSRA+ E  NK+ +S +KPYLH
Sbjct: 79  VHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKS-RKPYLH 138

Query: 258 ESRHLHAMRRERGCRGRFVSKKKMAEPIASMADDGKGSNMSS 283
           ESRHLHA+RR RGC GRF++ KK  E     + + K SN+S+
Sbjct: 139 ESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEK-SNLSA 178

[Close]
BLAST of Cp4.1LG10g11710 vs. TAIR10
Match: AT1G17590.1 (AT1G17590.1 nuclear factor Y, subunit A8)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-21
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 1 

Query: 165 SYQYKDVYYGQLMPPFGFQ--TLHNSEYTRMTLPLAMAE-EPVYVNAKQYHGILRRRQSR 224
           S+ Y D ++G LMP       T+ N + TR+ LP  + E EPV+VNAKQ+H I+RRRQ R
Sbjct: 132 SFHYADPHFGGLMPAAYLPQATIWNPQMTRVPLPFDLIENEPVFVNAKQFHAIMRRRQQR 191

Query: 225 AKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKMAE 267
           AK E  NK+ ++ +KPYLHESRH+HA++R RG  GRF++ KK+ E
Sbjct: 192 AKLEAQNKLIKA-RKPYLHESRHVHALKRPRGSGGRFLNTKKLQE 235

[Close]
BLAST of Cp4.1LG10g11710 vs. TAIR10
Match: AT2G34720.1 (AT2G34720.1 nuclear factor Y, subunit A4)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-19
Identity = 56/107 (52.34%), Postives = 67/107 (62.62%), Query Frame = 1 

Query: 166 YQYKDVYYGQLM--------PPFGFQT-LHNSEYTRMTLPLAMAEEPVYVNAKQYHGILR 225
           Y Y D YY  +         P  G Q  L   +   + L     EEPV+VNAKQYHGILR
Sbjct: 53  YPYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILR 112

Query: 226 RRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKK 264
           RRQSRAK E  N+  ++ KKPY+HESRHLHA+RR RGC GRF++ KK
Sbjct: 113 RRQSRAKLEARNRAIKA-KKPYMHESRHLHAIRRPRGCGGRFLNAKK 158

[Close]
BLAST of Cp4.1LG10g11710 vs. NCBI nr
Match: gi|659121698|ref|XP_008460780.1| (PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis melo])

HSP 1 Score: 261.2 bits (666), Expect = 2.3e-66
Identity = 152/265 (57.36%), Postives = 176/265 (66.42%), Query Frame = 1 

Query: 58  SSLSTLNRLESYNPQLS--WGLGAPTILDISKEDKVNISKEDKVNWAWPNGLVDIGPQPN 117
           S +   NR +  N Q++       P  L        N+SKE+K NWAWP GLVD  P P 
Sbjct: 4   SEIECGNRPDCDNQQITNYTNNSQPCKLHGGNSTTANMSKEEKRNWAWPKGLVDSEPVPR 63

Query: 118 RSTKEVQETMAPPPYGELVVACQSKDASIVLPLMNNEHYEASTHE--------TTATSYQ 177
            S KE++ T++     E  +  +S+D S VLPLMNNEHY AST +        TT TSY 
Sbjct: 64  TSHKEMRITLSGV---ESTLPYKSRDESTVLPLMNNEHYHASTSQPELLTLSMTTDTSYT 123

Query: 178 YKDVYYGQLMPPFGFQTLHNSEYTRM-----TLPLAMAEEPVYVNAKQYHGILRRRQSRA 237
           Y D  YG L  PF FQT+HNS+Y+RM      LPLAMAEEPVYVNAKQYHGILRRRQSRA
Sbjct: 124 YHDPSYGGLPSPFEFQTMHNSDYSRMAQARMALPLAMAEEPVYVNAKQYHGILRRRQSRA 183

Query: 238 KAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKMAEPIASM--ADDGKGSNM 297
           KAEV N+ISRSQ+KPYLHESRHLHAMRRERGC GRF+SKKK  E   S+   DDG+GSN+
Sbjct: 184 KAEVENRISRSQRKPYLHESRHLHAMRRERGCGGRFLSKKKKVEASTSLDDDDDGEGSNI 243

[Close]
BLAST of Cp4.1LG10g11710 vs. NCBI nr
Match: gi|449465501|ref|XP_004150466.1| (PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 2.8e-64
Identity = 141/224 (62.95%), Postives = 160/224 (71.43%), Query Frame = 1 

Query: 95  KEDKVNWAWPNGLVDIGPQPNRSTKEVQETMAPP----PYGELVVACQSKDASIVLPLMN 154
           KE+K NWAWP  LVD  P+   STKE+  T++      PY       +S+D S VLP MN
Sbjct: 48  KEEKRNWAWPKPLVDSQPEHKTSTKELHITLSGVGPTLPY-------KSRDVSTVLPFMN 107

Query: 155 NEHYEASTHE--------TTATSYQYKDVYYGQLMPPFGFQTLHNSEYTRMTLPLAMAEE 214
           NEHY AST +        T  TSY Y D  YG L+ PFGFQT+HNS+Y+RM LPLAMAEE
Sbjct: 108 NEHYHASTSQSELLSLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMAEE 167

Query: 215 PVYVNAKQYHGILRRRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKK 274
           PVYVNAKQYHGILRRRQSRAKAEV NKISRSQ+KPYLHESRHLHAMRRERGC GRF+SK 
Sbjct: 168 PVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKN 227

Query: 275 KMAEPIASM-ADDGKGSNMS---------SNCYQGSELHLSAYI 297
           K AE  + +  DDG+GSN+S         S CYQGS+LHLSAYI
Sbjct: 228 KKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 264

[Close]
BLAST of Cp4.1LG10g11710 vs. NCBI nr
Match: gi|700198675|gb|KGN53833.1| (hypothetical protein Csa_4G159320 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 2.8e-64
Identity = 141/224 (62.95%), Postives = 160/224 (71.43%), Query Frame = 1 

Query: 95  KEDKVNWAWPNGLVDIGPQPNRSTKEVQETMAPP----PYGELVVACQSKDASIVLPLMN 154
           KE+K NWAWP  LVD  P+   STKE+  T++      PY       +S+D S VLP MN
Sbjct: 128 KEEKRNWAWPKPLVDSQPEHKTSTKELHITLSGVGPTLPY-------KSRDVSTVLPFMN 187

Query: 155 NEHYEASTHE--------TTATSYQYKDVYYGQLMPPFGFQTLHNSEYTRMTLPLAMAEE 214
           NEHY AST +        T  TSY Y D  YG L+ PFGFQT+HNS+Y+RM LPLAMAEE
Sbjct: 188 NEHYHASTSQSELLSLSMTANTSYAYHDPSYGGLLSPFGFQTMHNSDYSRMALPLAMAEE 247

Query: 215 PVYVNAKQYHGILRRRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKK 274
           PVYVNAKQYHGILRRRQSRAKAEV NKISRSQ+KPYLHESRHLHAMRRERGC GRF+SK 
Sbjct: 248 PVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRFLSKN 307

Query: 275 KMAEPIASM-ADDGKGSNMS---------SNCYQGSELHLSAYI 297
           K AE  + +  DDG+GSN+S         S CYQGS+LHLSAYI
Sbjct: 308 KKAEASSLLDDDDGEGSNISLGSESMCNGSKCYQGSQLHLSAYI 344

[Close]
BLAST of Cp4.1LG10g11710 vs. NCBI nr
Match: gi|590636232|ref|XP_007028810.1| (Nuclear factor Y, putative [Theobroma cacao])

HSP 1 Score: 138.7 bits (348), Expect = 1.7e-29
Identity = 79/130 (60.77%), Postives = 91/130 (70.00%), Query Frame = 1 

Query: 159 HETTATSYQYKDVYYGQLMPPFGFQTLHNSEY-----TRMTLPLAMAEEPVYVNAKQYHG 218
           H     SY Y D YYG  MPP+G Q+L +         RM LPL MAEEPVYVNAKQYHG
Sbjct: 127 HSIACPSYPYADPYYGGAMPPYGPQSLVHPHCLGVHPARMALPLEMAEEPVYVNAKQYHG 186

Query: 219 ILRRRQSRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKMAEPIASMAD 278
           ILRRRQSRAKAE+  K+ +  +KPYLHESRHLHAMRR RGC GRF++ KK+ +  AS A 
Sbjct: 187 ILRRRQSRAKAELEKKLIKV-RKPYLHESRHLHAMRRARGCGGRFLNTKKL-DSDASNAT 246

Query: 279 DGKGSNMSSN 284
             KGS+ SSN
Sbjct: 247 PDKGSDTSSN 254

[Close]
BLAST of Cp4.1LG10g11710 vs. NCBI nr
Match: gi|672109578|ref|XP_008790800.1| (PREDICTED: nuclear transcription factor Y subunit A-1 isoform X2 [Phoenix dactylifera])

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 74/124 (59.68%), Postives = 91/124 (73.39%), Query Frame = 1 

Query: 165 SYQYKDVYYGQLMPPFGFQTLHNSE-----YTRMTLPLAMAEEPVYVNAKQYHGILRRRQ 224
           +Y Y D Y+ ++M P+G Q L + +     YTRM LPL MAEEPVYVNAKQYHGILRRRQ
Sbjct: 131 TYSYSDPYFSRIMAPYGTQALVHPQLLGMPYTRMPLPLEMAEEPVYVNAKQYHGILRRRQ 190

Query: 225 SRAKAEVLNKISRSQKKPYLHESRHLHAMRRERGCRGRFVSKKKMAEPIASMADDGKGSN 284
           SRAKAE+  K+ +  +KPYLHESRHLHAMRR RGC GRF++ KK AE  AS+A+   G N
Sbjct: 191 SRAKAELEKKVIKV-RKPYLHESRHLHAMRRARGCGGRFLNTKK-AEASASIANPENGGN 250

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g11710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYA9_ARATH2.4e-2340.65Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2... [more]
NFYA1_ARATH1.0e-2150.36Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2... [more]
NFYA7_ARATH1.3e-2141.36Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2... [more]
NFYA8_ARATH4.2e-2051.43Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2... [more]
NFYA4_ARATH3.0e-1852.34Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2... [more]
BLAST of Cp4.1LG10g11710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWA0_CUCSA1.9e-6462.95Uncharacterized protein OS=Cucumis sativus GN=Csa_4G159320 PE=4 SV=1[more]
A0A061EY16_THECC1.2e-2960.77Nuclear factor Y, putative OS=Theobroma cacao GN=TCM_024732 PE=4 SV=1[more]
A0A0D2Q705_GOSRA5.0e-2848.09Uncharacterized protein OS=Gossypium raimondii GN=B456_002G151800 PE=4 SV=1[more]
A0A0R0H9H0_SOYBN7.2e-2741.58Uncharacterized protein OS=Glycine max GN=GLYMA_12G236800 PE=4 SV=1[more]
A0A151TPS3_CAJCA7.2e-2753.47Nuclear transcription factor Y subunit A-1 OS=Cajanus cajan GN=KK1_022693 PE=4 S... [more]
BLAST of Cp4.1LG10g11710 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G20910.11.3e-2440.65 nuclear factor Y, subunit A9[more]
AT5G12840.15.6e-2350.36 nuclear factor Y, subunit A1[more]
AT1G30500.27.3e-2341.36 nuclear factor Y, subunit A7[more]
AT1G17590.12.4e-2151.43 nuclear factor Y, subunit A8[more]
AT2G34720.11.7e-1952.34 nuclear factor Y, subunit A4[more]
BLAST of Cp4.1LG10g11710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121698|ref|XP_008460780.1|2.3e-6657.36PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis melo][more]
gi|449465501|ref|XP_004150466.1|2.8e-6462.95PREDICTED: nuclear transcription factor Y subunit A-7-like [Cucumis sativus][more]
gi|700198675|gb|KGN53833.1|2.8e-6462.95hypothetical protein Csa_4G159320 [Cucumis sativus][more]
gi|590636232|ref|XP_007028810.1|1.7e-2960.77Nuclear factor Y, putative [Theobroma cacao][more]
gi|672109578|ref|XP_008790800.1|1.4e-2859.68PREDICTED: nuclear transcription factor Y subunit A-1 isoform X2 [Phoenix dactyl... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016602CCAAT-binding factor complex
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR018362CCAAT-binding_factor_CS
IPR001289NFYA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016602 CCAAT-binding factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g11710.1Cp4.1LG10g11710.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001289Nuclear transcription factor Y subunit APRINTSPR00616CCAATSUBUNTBcoord: 203..225
score: 2.2E-22coord: 235..258
score: 2.2
IPR001289Nuclear transcription factor Y subunit APANTHERPTHR12632TRANSCRIPTION FACTOR NF-Y ALPHA-RELATEDcoord: 153..288
score: 9.2
IPR001289Nuclear transcription factor Y subunit APFAMPF02045CBFB_NFYAcoord: 202..258
score: 2.2
IPR001289Nuclear transcription factor Y subunit ASMARTSM00521cbf3coord: 199..261
score: 6.6
IPR001289Nuclear transcription factor Y subunit APROFILEPS51152NFYA_HAP2_2coord: 200..261
score: 35
IPR018362CCAAT-binding factor, conserved sitePROSITEPS00686NFYA_HAP2_1coord: 205..225
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g11710CmaCh03G000770Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g11710CmoCh03G000780Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g11710Cla000827Watermelon (97103) v1cpewmB090
Cp4.1LG10g11710Csa4G159320Cucumber (Chinese Long) v2cpecuB074
Cp4.1LG10g11710MELO3C023161Melon (DHL92) v3.5.1cpemeB072
Cp4.1LG10g11710ClCG04G000250Watermelon (Charleston Gray)cpewcgB079
Cp4.1LG10g11710CSPI04G10460Wild cucumber (PI 183967)cpecpiB069
Cp4.1LG10g11710Lsi01G018770Bottle gourd (USVL1VR-Ls)cpelsiB055
Cp4.1LG10g11710MELO3C023161.2Melon (DHL92) v3.6.1cpemedB085
Cp4.1LG10g11710CsaV3_4G011610Cucumber (Chinese Long) v3cpecucB0079
Cp4.1LG10g11710Carg22465Silver-seed gourdcarcpeB0276
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g11710Silver-seed gourdcarcpeB0398
Cp4.1LG10g11710Cucumber (Chinese Long) v3cpecucB0086
Cp4.1LG10g11710Wax gourdcpewgoB0093
Cp4.1LG10g11710Wax gourdcpewgoB0104
Cp4.1LG10g11710Cucurbita pepo (Zucchini)cpecpeB085
Cp4.1LG10g11710Cucumber (Gy14) v1cgycpeB0451
Cp4.1LG10g11710Cucurbita maxima (Rimu)cmacpeB863
Cp4.1LG10g11710Cucurbita moschata (Rifu)cmocpeB803
Cp4.1LG10g11710Wild cucumber (PI 183967)cpecpiB077
Cp4.1LG10g11710Cucumber (Chinese Long) v2cpecuB080
Cp4.1LG10g11710Melon (DHL92) v3.5.1cpemeB064
Cp4.1LG10g11710Cucumber (Gy14) v2cgybcpeB467
Cp4.1LG10g11710Cucumber (Gy14) v2cgybcpeB475
Cp4.1LG10g11710Melon (DHL92) v3.6.1cpemedB094