MELO3C018806 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018806
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ubiquitin family protein
Location	chr1 : 2927144 .. 2927461 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGTGGTGCAAAATTTGACGGGCTCTTTGTTCTTCGTTGAGGTTGAAGACGATGCCACCGTTTGTGATCTTAGAACTCAAATCACTGCTCACCAACACGATCTTCCTTCTCATCGATTGATCTTCATTCCCGACCACGATACAGAACGTCTCATCTCCCAAACCGATGATGGAATCTCGCTCGTTGATTTTGGCTTACGTGATGGTTCCCACATTTACATCTTTTTCTATCCCCTTGATGACGAAGATGGTGATGATATTGAAGCTCGTCGATTCTTCTTTGCTTCTTCTTCCAATCTTCTTCTCTTCTAA

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACGGGCTCTTTGTTCTTCGTTGAGGTTGAAGACGATGCCACCGTTTGTGATCTTAGAACTCAAATCACTGCTCACCAACACGATCTTCCTTCTCATCGATTGATCTTCATTCCCGACCACGATACAGAACGTCTCATCTCCCAAACCGATGATGGAATCTCGCTCGTTGATTTTGGCTTACGTGATGGTTCCCACATTTACATCTTTTTCTATCCCCTTGATGACGAAGATGGTGATGATATTGAAGCTCGTCGATTCTTCTTTGCTTCTTCTTCCAATCTTCTTCTCTTCTAA

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACGGGCTCTTTGTTCTTCGTTGAGGTTGAAGACGATGCCACCGTTTGTGATCTTAGAACTCAAATCACTGCTCACCAACACGATCTTCCTTCTCATCGATTGATCTTCATTCCCGACCACGATACAGAACGTCTCATCTCCCAAACCGATGATGGAATCTCGCTCGTTGATTTTGGCTTACGTGATGGTTCCCACATTTACATCTTTTTCTATCCCCTTGATGACGAAGATGGTGATGATATTGAAGCTCGTCGATTCTTCTTTGCTTCTTCTTCCAATCTTCTTCTCTTCTAA

Protein sequence

MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDGISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF*

Homology

[Close]

BLAST of MELO3C018806 vs. TrEMBL
Match: A0A0A0K6V6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.0e-44
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAH--QHDLPSHRLIFIPDHDTERLISQTD 60
           MKLVVQNLTGSLFFVEVEDDATV DLRTQI AH  QH+LPSHRLIFIPDH+ ERLISQ D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
           DGISLVDFGLRDGSHIYIFF PL D+DGDDIEARRFFF SSS+LLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of MELO3C018806 vs. TrEMBL
Match: W9SD66_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018262 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-16
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
          MK+VV+NLTG+LFF++V +DATV +L+ +I A Q +LP  RLI I D +  R I+    G
Sbjct: 1  MKVVVENLTGTLFFIQVGNDATVAELKREIEA-QENLPCDRLILILDANGNRPINDDGSG 60

Query: 61 ISLVDFGLRDGSHIYIFFYPLDD 84
           SLVD G+RDGSHI+IFF PLDD
Sbjct: 61 ASLVDHGVRDGSHIFIFFNPLDD 82

[Close]

BLAST of MELO3C018806 vs. TrEMBL
Match: A0A0D2SM94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G179600 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-16
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPD-HDTERLISQTDD 60
          MKLVV+ LTG+LF+V+VEDDAT+ DL+ +I   Q +L   R+I I D  D  +LIS+ DD
Sbjct: 1  MKLVVEILTGNLFYVQVEDDATIDDLKKEIEG-QENLARERMILIVDSKDENQLISKEDD 60

Query: 61 GISLVDFGLRDGSHIYIFFYPLDDE 85
          G SL DFG++DGSHIY+FF PL+ E
Sbjct: 61 GASLADFGVQDGSHIYLFFNPLNIE 84

[Close]

BLAST of MELO3C018806 vs. TrEMBL
Match: A0A0L9V6P7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g117600 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-16
Identity = 49/99 (49.49%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
           MK+VV+NLTG+LF++EV++DAT  DL+ +I A Q  LPS RLIF+ D     ++S+ D+ 
Sbjct: 1   MKVVVENLTGALFYIEVKNDATFEDLKREIEA-QEKLPSDRLIFVLDSGECPIMSKEDEN 60

Query: 61  ISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASS 100
           +SL+D G++DGSHIY+FF  +DD+  D+     F F SS
Sbjct: 61  LSLLDSGIQDGSHIYLFFTSVDDDSTDN-----FRFTSS 93

[Close]

BLAST of MELO3C018806 vs. TrEMBL
Match: V7AG21_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G105800g PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-16
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
          MK+VV+NLTG+LF +EV +DATV DL+ +I  +Q  LPS R +FI D D   +I++ ++ 
Sbjct: 2  MKVVVENLTGTLFSIEVSNDATVEDLKREIE-NQQKLPSDRFVFILDTDERTVITKEEEK 61

Query: 61 ISLVDFGLRDGSHIYIFFYPLDDEDGDD 89
          +SL+D+G++DGS IY+FF PLDD+  ++
Sbjct: 62 VSLLDYGIQDGSRIYLFFTPLDDDSTEN 88

[Close]

BLAST of MELO3C018806 vs. TAIR10
Match: AT2G32360.1 (AT2G32360.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIF-IPDHDTERLISQTDD 60
          MK+ V+ +TG+    +V +DATV  ++ +I A +  LP  RLI  I D +T RL+ + +D
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKI-AVEVKLPVTRLILVIGDEETRRLVMEDED 60

Query: 61 GISLVDFGLRDGSHIYIFF 79
           + L D G+ + SHIY+FF
Sbjct: 61 DMMLRDLGVGEDSHIYLFF 78

[Close]

BLAST of MELO3C018806 vs. NCBI nr
Match: gi|700188303|gb|KGN43536.1| (hypothetical protein Csa_7G044270 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.3e-44
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAH--QHDLPSHRLIFIPDHDTERLISQTD 60
           MKLVVQNLTGSLFFVEVEDDATV DLRTQI AH  QH+LPSHRLIFIPDH+ ERLISQ D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
           DGISLVDFGLRDGSHIYIFF PL D+DGDDIEARRFFF SSS+LLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of MELO3C018806 vs. NCBI nr
Match: gi|703149137|ref|XP_010109527.1| (hypothetical protein L484_018262 [Morus notabilis])

HSP 1 Score: 92.8 bits (229), Expect = 3.8e-16
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
          MK+VV+NLTG+LFF++V +DATV +L+ +I A Q +LP  RLI I D +  R I+    G
Sbjct: 1  MKVVVENLTGTLFFIQVGNDATVAELKREIEA-QENLPCDRLILILDANGNRPINDDGSG 60

Query: 61 ISLVDFGLRDGSHIYIFFYPLDD 84
           SLVD G+RDGSHI+IFF PLDD
Sbjct: 61 ASLVDHGVRDGSHIFIFFNPLDD 82

[Close]

BLAST of MELO3C018806 vs. NCBI nr
Match: gi|593216051|ref|XP_007132568.1| (hypothetical protein PHAVU_011G105800g [Phaseolus vulgaris])

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-16
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
          MK+VV+NLTG+LF +EV +DATV DL+ +I  +Q  LPS R +FI D D   +I++ ++ 
Sbjct: 2  MKVVVENLTGTLFSIEVSNDATVEDLKREIE-NQQKLPSDRFVFILDTDERTVITKEEEK 61

Query: 61 ISLVDFGLRDGSHIYIFFYPLDDEDGDD 89
          +SL+D+G++DGS IY+FF PLDD+  ++
Sbjct: 62 VSLLDYGIQDGSRIYLFFTPLDDDSTEN 88

[Close]

BLAST of MELO3C018806 vs. NCBI nr
Match: gi|694400628|ref|XP_009375399.1| (PREDICTED: uncharacterized protein LOC103964214 [Pyrus x bretschneideri])

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-16
Identity = 47/88 (53.41%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTE-----RLIS 60
          MK+VV+NLTG+LF+V+V  +ATV DL+ +I A Q  LP HRLI I D D++     RL++
Sbjct: 3  MKVVVENLTGTLFYVQVGKEATVADLKREIEAQQK-LPYHRLILILDTDSDDRHCSRLMN 62

Query: 61 QTDDGISLVDFGLRDGSHIYIFFYPLDD 84
             DG+ LVD+G++DGSH+Y+F  PLDD
Sbjct: 63 DDADGVLLVDYGVQDGSHVYVFLNPLDD 89

[Close]

BLAST of MELO3C018806 vs. NCBI nr
Match: gi|920708352|gb|KOM50349.1| (hypothetical protein LR48_Vigan08g117600 [Vigna angularis])

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-16
Identity = 49/99 (49.49%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
           MK+VV+NLTG+LF++EV++DAT  DL+ +I A Q  LPS RLIF+ D     ++S+ D+ 
Sbjct: 1   MKVVVENLTGALFYIEVKNDATFEDLKREIEA-QEKLPSDRLIFVLDSGECPIMSKEDEN 60

Query: 61  ISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASS 100
           +SL+D G++DGSHIY+FF  +DD+  D+     F F SS
Sbjct: 61  LSLLDSGIQDGSHIYLFFTSVDDDSTDN-----FRFTSS 93

The following BLAST results are available for this feature:

BLAST of MELO3C018806 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V6_CUCSA	3.0e-44	87.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044270 PE=4 SV=1	[more]
W9SD66_9ROSA	2.7e-16	57.83	Uncharacterized protein OS=Morus notabilis GN=L484_018262 PE=4 SV=1	[more]
A0A0D2SM94_GOSRA	3.5e-16	57.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G179600 PE=4 SV=1	[more]
A0A0L9V6P7_PHAAN	3.5e-16	49.49	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g117600 PE=4 SV=1	[more]
V7AG21_PHAVU	3.5e-16	50.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G105800g PE=4 SV=1	[more]

BLAST of MELO3C018806 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32360.1	1.4e-08	40.51	Ubiquitin-like superfamily protein	[more]

BLAST of MELO3C018806 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188303\|gb\|KGN43536.1\|	4.3e-44	87.85	hypothetical protein Csa_7G044270 [Cucumis sativus]	[more]
gi\|703149137\|ref\|XP_010109527.1\|	3.8e-16	57.83	hypothetical protein L484_018262 [Morus notabilis]	[more]
gi\|593216051\|ref\|XP_007132568.1\|	5.0e-16	50.00	hypothetical protein PHAVU_011G105800g [Phaseolus vulgaris]	[more]
gi\|694400628\|ref\|XP_009375399.1\|	5.0e-16	53.41	PREDICTED: uncharacterized protein LOC103964214 [Pyrus x bretschneideri]	[more]
gi\|920708352\|gb\|KOM50349.1\|	5.0e-16	49.49	hypothetical protein LR48_Vigan08g117600 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018806T1	MELO3C018806T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	PROFILE	PS50053	UBIQUITIN_2	coord: 1..76 score: 8
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..76 score: 6.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018806	Csa7G044270	Cucumber (Chinese Long) v2	cumeB530
MELO3C018806	Cla007681	Watermelon (97103) v1	mewmB245
MELO3C018806	ClCG02G001810	Watermelon (Charleston Gray)	mewcgB195
MELO3C018806	Cla97C02G028220	Watermelon (97103) v2	mewmbB178
MELO3C018806	Bhi05G001162	Wax gourd	mewgoB212
MELO3C018806	CSPI07G03850	Wild cucumber (PI 183967)	cpimeB538
MELO3C018806	Cucsa.148390	Cucumber (Gy14) v1	cgymeB248
MELO3C018806	CmaCh11G018360	Cucurbita maxima (Rimu)	cmameB099
MELO3C018806	CmoCh11G019100	Cucurbita moschata (Rifu)	cmomeB090
MELO3C018806	Lsi11G014670	Bottle gourd (USVL1VR-Ls)	lsimeB095
MELO3C018806	Cp4.1LG04g03490	Cucurbita pepo (Zucchini)	cpemeB609
MELO3C018806	CsGy7G003500	Cucumber (Gy14) v2	cgybmeB468
MELO3C018806	CsaV3_7G003730	Cucumber (Chinese Long) v3	cucmeB548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018806	Cucurbita pepo (Zucchini)	cpemeB223
MELO3C018806	Cucurbita pepo (Zucchini)	cpemeB273
MELO3C018806	Cucurbita pepo (Zucchini)	cpemeB481
MELO3C018806	Cucurbita pepo (Zucchini)	cpemeB683
MELO3C018806	Bottle gourd (USVL1VR-Ls)	lsimeB065
MELO3C018806	Bottle gourd (USVL1VR-Ls)	lsimeB130
MELO3C018806	Cucumber (Gy14) v2	cgybmeB089
MELO3C018806	Cucumber (Gy14) v2	cgybmeB404
MELO3C018806	Silver-seed gourd	carmeB0033
MELO3C018806	Silver-seed gourd	carmeB0345
MELO3C018806	Silver-seed gourd	carmeB0640
MELO3C018806	Silver-seed gourd	carmeB0715
MELO3C018806	Silver-seed gourd	carmeB0865
MELO3C018806	Cucumber (Chinese Long) v3	cucmeB039
MELO3C018806	Cucumber (Chinese Long) v3	cucmeB107
MELO3C018806	Cucumber (Chinese Long) v3	cucmeB473
MELO3C018806	Watermelon (97103) v2	mewmbB172
MELO3C018806	Watermelon (97103) v2	mewmbB182
MELO3C018806	Watermelon (97103) v2	mewmbB191
MELO3C018806	Wax gourd	mewgoB235
MELO3C018806	Wax gourd	mewgoB236
MELO3C018806	Melon (DHL92) v3.5.1	memeB039
MELO3C018806	Melon (DHL92) v3.5.1	memeB064
MELO3C018806	Melon (DHL92) v3.5.1	memeB100
MELO3C018806	Cucumber (Gy14) v1	cgymeB021
MELO3C018806	Cucumber (Gy14) v1	cgymeB073
MELO3C018806	Cucurbita maxima (Rimu)	cmameB205
MELO3C018806	Cucurbita maxima (Rimu)	cmameB461
MELO3C018806	Cucurbita maxima (Rimu)	cmameB513
MELO3C018806	Cucurbita maxima (Rimu)	cmameB562
MELO3C018806	Cucurbita moschata (Rifu)	cmomeB190
MELO3C018806	Cucurbita moschata (Rifu)	cmomeB452
MELO3C018806	Cucurbita moschata (Rifu)	cmomeB504
MELO3C018806	Cucurbita moschata (Rifu)	cmomeB553
MELO3C018806	Wild cucumber (PI 183967)	cpimeB040
MELO3C018806	Wild cucumber (PI 183967)	cpimeB103
MELO3C018806	Wild cucumber (PI 183967)	cpimeB462
MELO3C018806	Cucumber (Chinese Long) v2	cumeB040
MELO3C018806	Cucumber (Chinese Long) v2	cumeB103
MELO3C018806	Cucumber (Chinese Long) v2	cumeB465
MELO3C018806	Watermelon (Charleston Gray)	mewcgB199
MELO3C018806	Watermelon (Charleston Gray)	mewcgB208
MELO3C018806	Watermelon (Charleston Gray)	mewcgB194
MELO3C018806	Watermelon (97103) v1	mewmB225
MELO3C018806	Watermelon (97103) v1	mewmB238
MELO3C018806	Watermelon (97103) v1	mewmB246