CSPI07G03850 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G03850
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ubiquitin family protein
Location	Chr7 : 3037869 .. 3038192 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTTTGTTCTTCGTGGAGGTTGAAGACGATGCCACTGTTTCTGATCTTAGAACTCAAATCAATGCTCATCCTCACCAACACAACCTCCCTTCTCACCGTTTGATCTTCATTCCCGACCACAATCCCGAACGTCTCATCTCCCAGGTCGATGATGGAATCTCACTCGTTGATTTTGGCTTACGTGATGGCTCTCACATTTACATCTTTTTCTCTCCCCTTCATGACGACGATGGTGATGACATTGAAGCTCGCCGATTCTTCTTTACTTCTTCTTCCGATCTTCTTCTCTTCTAA

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTTTGTTCTTCGTGGAGGTTGAAGACGATGCCACTGTTTCTGATCTTAGAACTCAAATCAATGCTCATCCTCACCAACACAACCTCCCTTCTCACCGTTTGATCTTCATTCCCGACCACAATCCCGAACGTCTCATCTCCCAGGTCGATGATGGAATCTCACTCGTTGATTTTGGCTTACGTGATGGCTCTCACATTTACATCTTTTTCTCTCCCCTTCATGACGACGATGGTGATGACATTGAAGCTCGCCGATTCTTCTTTACTTCTTCTTCCGATCTTCTTCTCTTCTAA

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTTTGTTCTTCGTGGAGGTTGAAGACGATGCCACTGTTTCTGATCTTAGAACTCAAATCAATGCTCATCCTCACCAACACAACCTCCCTTCTCACCGTTTGATCTTCATTCCCGACCACAATCCCGAACGTCTCATCTCCCAGGTCGATGATGGAATCTCACTCGTTGATTTTGGCTTACGTGATGGCTCTCACATTTACATCTTTTTCTCTCCCCTTCATGACGACGATGGTGATGACATTGAAGCTCGCCGATTCTTCTTTACTTCTTCTTCCGATCTTCTTCTCTTCTAA

Homology

[Close]

BLAST of CSPI07G03850 vs. TrEMBL
Match: A0A0A0K6V6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 108
           DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of CSPI07G03850 vs. TrEMBL
Match: W9SD66_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018262 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.5e-17
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MK+VV+NLTG+LFF++V +DATV++L+ +I A   Q NLP  RLI I D N  R I+   
Sbjct: 1   MKVVVENLTGTLFFIQVGNDATVAELKREIEA---QENLPCDRLILILDANGNRPINDDG 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSS 102
            G SLVD G+RDGSHI+IFF+PL  DDG   ++R F    S
Sbjct: 61  SGASLVDHGVRDGSHIFIFFNPL--DDGSS-QSRGFTLPDS 95

[Close]

BLAST of CSPI07G03850 vs. TrEMBL
Match: A0A0L9V6P7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g117600 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.5e-17
Identity = 50/101 (49.50%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MK+VV+NLTG+LF++EV++DAT  DL+ +I A   Q  LPS RLIF+ D     ++S+ D
Sbjct: 1   MKVVVENLTGALFYIEVKNDATFEDLKREIEA---QEKLPSDRLIFVLDSGECPIMSKED 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSS 102
           + +SL+D G++DGSHIY+FF+ + DD  D+     F FTSS
Sbjct: 61  ENLSLLDSGIQDGSHIYLFFTSVDDDSTDN-----FRFTSS 93

[Close]

BLAST of CSPI07G03850 vs. TrEMBL
Match: A0A0D2SM94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G179600 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.5e-17
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPE-RLISQV 60
          MKLVV+ LTG+LF+V+VEDDAT+ DL+ +I     Q NL   R+I I D   E +LIS+ 
Sbjct: 1  MKLVVEILTGNLFYVQVEDDATIDDLKKEIEG---QENLARERMILIVDSKDENQLISKE 60

Query: 61 DDGISLVDFGLRDGSHIYIFFSPLH 85
          DDG SL DFG++DGSHIY+FF+PL+
Sbjct: 61 DDGASLADFGVQDGSHIYLFFNPLN 82

[Close]

BLAST of CSPI07G03850 vs. TrEMBL
Match: V7AG21_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G105800g PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.9e-16
Identity = 43/90 (47.78%), Postives = 67/90 (74.44%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
          MK+VV+NLTG+LF +EV +DATV DL+ +I    +Q  LPS R +FI D +   +I++ +
Sbjct: 2  MKVVVENLTGTLFSIEVSNDATVEDLKREIE---NQQKLPSDRFVFILDTDERTVITKEE 61

Query: 61 DGISLVDFGLRDGSHIYIFFSPLHDDDGDD 91
          + +SL+D+G++DGS IY+FF+PL DD  ++
Sbjct: 62 EKVSLLDYGIQDGSRIYLFFTPLDDDSTEN 88

[Close]

BLAST of CSPI07G03850 vs. TAIR10
Match: AT2G32360.1 (AT2G32360.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-07
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIF-IPDHNPERLISQV 60
          MK+ V+ +TG+    +V +DATV  ++ +I     +  LP  RLI  I D    RL+ + 
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKIAV---EVKLPVTRLILVIGDEETRRLVMED 60

Query: 61 DDGISLVDFGLRDGSHIYIFF 81
          +D + L D G+ + SHIY+FF
Sbjct: 61 EDDMMLRDLGVGEDSHIYLFF 78

[Close]

BLAST of CSPI07G03850 vs. NCBI nr
Match: gi|700188303|gb|KGN43536.1| (hypothetical protein Csa_7G044270 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 108
           DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of CSPI07G03850 vs. NCBI nr
Match: gi|920708352|gb|KOM50349.1| (hypothetical protein LR48_Vigan08g117600 [Vigna angularis])

HSP 1 Score: 95.1 bits (235), Expect = 7.8e-17
Identity = 50/101 (49.50%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MK+VV+NLTG+LF++EV++DAT  DL+ +I A   Q  LPS RLIF+ D     ++S+ D
Sbjct: 1   MKVVVENLTGALFYIEVKNDATFEDLKREIEA---QEKLPSDRLIFVLDSGECPIMSKED 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSS 102
           + +SL+D G++DGSHIY+FF+ + DD  D+     F FTSS
Sbjct: 61  ENLSLLDSGIQDGSHIYLFFTSVDDDSTDN-----FRFTSS 93

[Close]

BLAST of CSPI07G03850 vs. NCBI nr
Match: gi|703149137|ref|XP_010109527.1| (hypothetical protein L484_018262 [Morus notabilis])

HSP 1 Score: 95.1 bits (235), Expect = 7.8e-17
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MK+VV+NLTG+LFF++V +DATV++L+ +I A   Q NLP  RLI I D N  R I+   
Sbjct: 1   MKVVVENLTGTLFFIQVGNDATVAELKREIEA---QENLPCDRLILILDANGNRPINDDG 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSS 102
            G SLVD G+RDGSHI+IFF+PL  DDG   ++R F    S
Sbjct: 61  SGASLVDHGVRDGSHIFIFFNPL--DDGSS-QSRGFTLPDS 95

[Close]

BLAST of CSPI07G03850 vs. NCBI nr
Match: gi|823180360|ref|XP_012487808.1| (PREDICTED: uncharacterized protein LOC105801008 [Gossypium raimondii])

HSP 1 Score: 95.1 bits (235), Expect = 7.8e-17
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPE-RLISQV 60
          MKLVV+ LTG+LF+V+VEDDAT+ DL+ +I     Q NL   R+I I D   E +LIS+ 
Sbjct: 1  MKLVVEILTGNLFYVQVEDDATIDDLKKEIEG---QENLARERMILIVDSKDENQLISKE 60

Query: 61 DDGISLVDFGLRDGSHIYIFFSPLH 85
          DDG SL DFG++DGSHIY+FF+PL+
Sbjct: 61 DDGASLADFGVQDGSHIYLFFNPLN 82

[Close]

BLAST of CSPI07G03850 vs. NCBI nr
Match: gi|1009128163|ref|XP_015881081.1| (PREDICTED: uncharacterized protein LOC107417039 [Ziziphus jujuba])

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-16
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
          M++VV+NLTG+LF++++ +DATV +L+ +I A   Q  LP  RLI IPD NP   I    
Sbjct: 1  MRVVVENLTGTLFYIQLGNDATVRELKREIEA---QEKLPCDRLILIPDTNPSYPIHDDG 60

Query: 61 DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRF 97
           G+SLVD+G++DGSHIYIFF+PL D+  D     R+
Sbjct: 61 GGVSLVDYGVQDGSHIYIFFNPL-DETNDASSTHRY 92

The following BLAST results are available for this feature:

BLAST of CSPI07G03850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G03850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V6_CUCSA	1.1e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044270 PE=4 SV=1	[more]
W9SD66_9ROSA	5.5e-17	53.47	Uncharacterized protein OS=Morus notabilis GN=L484_018262 PE=4 SV=1	[more]
A0A0L9V6P7_PHAAN	5.5e-17	49.50	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g117600 PE=4 SV=1	[more]
A0A0D2SM94_GOSRA	5.5e-17	57.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G179600 PE=4 SV=1	[more]
V7AG21_PHAVU	7.9e-16	47.78	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G105800g PE=4 SV=1	[more]

BLAST of CSPI07G03850 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32360.1	2.7e-07	37.04	Ubiquitin-like superfamily protein	[more]

BLAST of CSPI07G03850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188303\|gb\|KGN43536.1\|	1.6e-54	100.00	hypothetical protein Csa_7G044270 [Cucumis sativus]	[more]
gi\|920708352\|gb\|KOM50349.1\|	7.8e-17	49.50	hypothetical protein LR48_Vigan08g117600 [Vigna angularis]	[more]
gi\|703149137\|ref\|XP_010109527.1\|	7.8e-17	53.47	hypothetical protein L484_018262 [Morus notabilis]	[more]
gi\|823180360\|ref\|XP_012487808.1\|	7.8e-17	57.65	PREDICTED: uncharacterized protein LOC105801008 [Gossypium raimondii]	[more]
gi\|1009128163\|ref\|XP_015881081.1\|	1.0e-16	50.00	PREDICTED: uncharacterized protein LOC107417039 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G03850.1	CSPI07G03850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	PROFILE	PS50053	UBIQUITIN_2	coord: 1..78 score: 1
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..78 score: 8.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G03850	Cla007681	Watermelon (97103) v1	cpiwmB614
CSPI07G03850	Csa7G044270	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G03850	MELO3C018806	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G03850	ClCG02G001810	Watermelon (Charleston Gray)	cpiwcgB574
CSPI07G03850	Lsi11G014670	Bottle gourd (USVL1VR-Ls)	cpilsiB505
CSPI07G03850	MELO3C018806.2	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G03850	CsaV3_7G003730	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G03850	Cla97C02G028220	Watermelon (97103) v2	cpiwmbB553
CSPI07G03850	Bhi05G001162	Wax gourd	cpiwgoB681
CSPI07G03850	Cucsa.148390	Cucumber (Gy14) v1	cgycpiB220
CSPI07G03850	CmaCh11G018360	Cucurbita maxima (Rimu)	cmacpiB144
CSPI07G03850	CmoCh11G019100	Cucurbita moschata (Rifu)	cmocpiB131
CSPI07G03850	Cp4.1LG04g03490	Cucurbita pepo (Zucchini)	cpecpiB692
CSPI07G03850	CsGy7G003500	Cucumber (Gy14) v2	cgybcpiB332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G03850	Melon (DHL92) v3.6.1	cpimedB507
CSPI07G03850	Melon (DHL92) v3.6.1	cpimedB509
CSPI07G03850	Melon (DHL92) v3.6.1	cpimedB560
CSPI07G03850	Cucumber (Gy14) v2	cgybcpiB087
CSPI07G03850	Cucumber (Gy14) v2	cgybcpiB295
CSPI07G03850	Silver-seed gourd	carcpiB0034
CSPI07G03850	Silver-seed gourd	carcpiB0378
CSPI07G03850	Silver-seed gourd	carcpiB0673
CSPI07G03850	Silver-seed gourd	carcpiB0755
CSPI07G03850	Silver-seed gourd	carcpiB0911
CSPI07G03850	Cucumber (Chinese Long) v3	cpicucB380
CSPI07G03850	Cucumber (Chinese Long) v3	cpicucB385
CSPI07G03850	Cucumber (Chinese Long) v3	cpicucB409
CSPI07G03850	Watermelon (97103) v2	cpiwmbB562
CSPI07G03850	Watermelon (97103) v2	cpiwmbB539
CSPI07G03850	Watermelon (97103) v2	cpiwmbB556
CSPI07G03850	Wax gourd	cpiwgoB691
CSPI07G03850	Wax gourd	cpiwgoB699
CSPI07G03850	Wild cucumber (PI 183967)	cpicpiB050
CSPI07G03850	Wild cucumber (PI 183967)	cpicpiB090
CSPI07G03850	Wild cucumber (PI 183967)	cpicpiB188
CSPI07G03850	Cucumber (Gy14) v1	cgycpiB029
CSPI07G03850	Cucumber (Gy14) v1	cgycpiB069
CSPI07G03850	Cucurbita maxima (Rimu)	cmacpiB233
CSPI07G03850	Cucurbita maxima (Rimu)	cmacpiB533
CSPI07G03850	Cucurbita maxima (Rimu)	cmacpiB576
CSPI07G03850	Cucurbita maxima (Rimu)	cmacpiB650
CSPI07G03850	Cucurbita moschata (Rifu)	cmocpiB220
CSPI07G03850	Cucurbita moschata (Rifu)	cmocpiB524
CSPI07G03850	Cucurbita moschata (Rifu)	cmocpiB568
CSPI07G03850	Cucurbita moschata (Rifu)	cmocpiB643
CSPI07G03850	Cucumber (Chinese Long) v2	cpicuB326
CSPI07G03850	Melon (DHL92) v3.5.1	cpimeB520
CSPI07G03850	Melon (DHL92) v3.5.1	cpimeB575
CSPI07G03850	Watermelon (Charleston Gray)	cpiwcgB566
CSPI07G03850	Watermelon (Charleston Gray)	cpiwcgB578
CSPI07G03850	Watermelon (Charleston Gray)	cpiwcgB583
CSPI07G03850	Watermelon (97103) v1	cpiwmB600
CSPI07G03850	Watermelon (97103) v1	cpiwmB612
CSPI07G03850	Watermelon (97103) v1	cpiwmB617
CSPI07G03850	Cucurbita pepo (Zucchini)	cpecpiB257
CSPI07G03850	Cucurbita pepo (Zucchini)	cpecpiB301
CSPI07G03850	Cucurbita pepo (Zucchini)	cpecpiB768
CSPI07G03850	Bottle gourd (USVL1VR-Ls)	cpilsiB499
CSPI07G03850	Bottle gourd (USVL1VR-Ls)	cpilsiB516