Lsi11G014670 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi11G014670
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUbiquitin family protein
Locationchr11 : 23235541 .. 23235852 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTTGAGGTTGAAGACGATGCGACTGTTTCCGATCTTAGAACCCAGATCACTACCCATCACAACCTCCCTTCTGACCGTCTGATCTTTATTCCTGACCACAATCGCGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCAAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTCATGATGATGATGGTGATGATCTTGAAGCTCGTCAATTCTTCTTTACTTGTCCTGATCTTCTTCTCTTCTAG

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTTGAGGTTGAAGACGATGCGACTGTTTCCGATCTTAGAACCCAGATCACTACCCATCACAACCTCCCTTCTGACCGTCTGATCTTTATTCCTGACCACAATCGCGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCAAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTCATGATGATGATGGTGATGATCTTGAAGCTCGTCAATTCTTCTTTACTTGTCCTGATCTTCTTCTCTTCTAG

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTTGAGGTTGAAGACGATGCGACTGTTTCCGATCTTAGAACCCAGATCACTACCCATCACAACCTCCCTTCTGACCGTCTGATCTTTATTCCTGACCACAATCGCGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCAAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTCATGATGATGATGGTGATGATCTTGAAGCTCGTCAATTCTTCTTTACTTGTCCTGATCTTCTTCTCTTCTAG

Protein sequence

MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLICDGDDGISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDLLLF
BLAST of Lsi11G014670 vs. TrEMBL
Match: A0A0A0K6V6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.8e-40
Identity = 87/107 (81.31%), Postives = 93/107 (86.92%), Query Frame = 1

Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTH---HNLPSDRLIFIPDHNRDRLICDGD 60
           MKLVVQNLTGSLF+VEVEDDATVSDLRTQI  H   HNLPS RLIFIPDHN +RLI   D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFT-CPDLLLF 104
           DGISLVDFG++DGSHIYIFF PLHDDDGDD+EAR+FFFT   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

BLAST of Lsi11G014670 vs. TrEMBL
Match: M5VZR8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014632mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-20
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 1

Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLIC--DGDD 60
           MK+VV+NLTGSLFYV+V ++ATV+DL+ +I T   LP DR+I I   +  RL+   DGDD
Sbjct: 1   MKVVVENLTGSLFYVQVGNNATVADLKREIETQQKLPYDRMILILGADDHRLMTKDDGDD 60

Query: 61  GISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDLLL 103
           G+SLVD+GV+D SHIYIFF PL     DD    +F  T PD LL
Sbjct: 61  GVSLVDYGVEDESHIYIFFDPL-----DDGSTHRFLLTWPDSLL 99

BLAST of Lsi11G014670 vs. TrEMBL
Match: M5XPD8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024078mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1

Query: 1  MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFI-----PDHNRDRLICD 60
          MK+VV+NLTG+LFYV+V D  TV+DL+ +I     LP DRLIFI      DH+R  LI D
Sbjct: 1  MKVVVENLTGTLFYVQVGDKGTVADLKREIEVQQKLPYDRLIFILDTDDHDHHRCHLIKD 60

Query: 61 GDDGISLVDFGVQDGSHIYIFFCPLHDDDGD 87
            DG+ LVD+GVQDGSH+Y+F  PL  DDGD
Sbjct: 61 DVDGVLLVDYGVQDGSHVYMFVNPL--DDGD 89

BLAST of Lsi11G014670 vs. TrEMBL
Match: A0A0L9V6P7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g117600 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 1

Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MK+VV+NLTG+LFY+EV++DAT  DL+ +I     LPSDRLIF+ D     ++   D+ +
Sbjct: 1   MKVVVENLTGALFYIEVKNDATFEDLKREIEAQEKLPSDRLIFVLDSGECPIMSKEDENL 60

Query: 61  SLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDL 101
           SL+D G+QDGSHIY+FF  + DD  D+     F FT  DL
Sbjct: 61  SLLDSGIQDGSHIYLFFTSVDDDSTDN-----FRFTSSDL 95

BLAST of Lsi11G014670 vs. TrEMBL
Match: W9SD66_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018262 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 1

Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MK+VV+NLTG+LF+++V +DATV++L+ +I    NLP DRLI I D N +R I D   G 
Sbjct: 1   MKVVVENLTGTLFFIQVGNDATVAELKREIEAQENLPCDRLILILDANGNRPINDDGSGA 60

Query: 61  SLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPD 100
           SLVD GV+DGSHI+IFF PL     DD  ++   FT PD
Sbjct: 61  SLVDHGVRDGSHIFIFFNPL-----DDGSSQSRGFTLPD 94

BLAST of Lsi11G014670 vs. TAIR10
Match: AT2G32360.1 (AT2G32360.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-09
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 1

Query: 1  MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIF-IPDHNRDRLICDGDDG 60
          MK+ V+ +TG+    +V +DATV  ++ +I     LP  RLI  I D    RL+ + +D 
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKIAVEVKLPVTRLILVIGDEETRRLVMEDEDD 60

Query: 61 ISLVDFGVQDGSHIYIFF 78
          + L D GV + SHIY+FF
Sbjct: 61 MMLRDLGVGEDSHIYLFF 78

BLAST of Lsi11G014670 vs. NCBI nr
Match: gi|700188303|gb|KGN43536.1| (hypothetical protein Csa_7G044270 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-39
Identity = 87/107 (81.31%), Postives = 93/107 (86.92%), Query Frame = 1

Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTH---HNLPSDRLIFIPDHNRDRLICDGD 60
           MKLVVQNLTGSLF+VEVEDDATVSDLRTQI  H   HNLPS RLIFIPDHN +RLI   D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFT-CPDLLLF 104
           DGISLVDFG++DGSHIYIFF PLHDDDGDD+EAR+FFFT   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

BLAST of Lsi11G014670 vs. NCBI nr
Match: gi|595790187|ref|XP_007198846.1| (hypothetical protein PRUPE_ppa014632mg [Prunus persica])

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 1

Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLIC--DGDD 60
           MK+VV+NLTGSLFYV+V ++ATV+DL+ +I T   LP DR+I I   +  RL+   DGDD
Sbjct: 1   MKVVVENLTGSLFYVQVGNNATVADLKREIETQQKLPYDRMILILGADDHRLMTKDDGDD 60

Query: 61  GISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDLLL 103
           G+SLVD+GV+D SHIYIFF PL     DD    +F  T PD LL
Sbjct: 61  GVSLVDYGVEDESHIYIFFDPL-----DDGSTHRFLLTWPDSLL 99

BLAST of Lsi11G014670 vs. NCBI nr
Match: gi|645245756|ref|XP_008229029.1| (PREDICTED: uncharacterized protein LOC103328418 [Prunus mume])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1

Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFI--PDHNRDRLICDGDD 60
           MK+VV+NLTGSLFYV+V ++ATV+DL+ +I T   LP DR+I I   D +R  +  DG+D
Sbjct: 1   MKVVVENLTGSLFYVQVGNNATVADLKREIETQQKLPYDRMILILGADDHRLMMKDDGND 60

Query: 61  GISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDLLL 103
           G+SLVD+GVQD SHIYIFF PL     DD  + +F  T PD LL
Sbjct: 61  GVSLVDYGVQDESHIYIFFDPL-----DDGSSHRFLLTWPDSLL 99

BLAST of Lsi11G014670 vs. NCBI nr
Match: gi|920708352|gb|KOM50349.1| (hypothetical protein LR48_Vigan08g117600 [Vigna angularis])

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-18
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 1

Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MK+VV+NLTG+LFY+EV++DAT  DL+ +I     LPSDRLIF+ D     ++   D+ +
Sbjct: 1   MKVVVENLTGALFYIEVKNDATFEDLKREIEAQEKLPSDRLIFVLDSGECPIMSKEDENL 60

Query: 61  SLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDL 101
           SL+D G+QDGSHIY+FF  + DD  D+     F FT  DL
Sbjct: 61  SLLDSGIQDGSHIYLFFTSVDDDSTDN-----FRFTSSDL 95

BLAST of Lsi11G014670 vs. NCBI nr
Match: gi|596036528|ref|XP_007219706.1| (hypothetical protein PRUPE_ppa024078mg [Prunus persica])

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-18
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1

Query: 1  MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFI-----PDHNRDRLICD 60
          MK+VV+NLTG+LFYV+V D  TV+DL+ +I     LP DRLIFI      DH+R  LI D
Sbjct: 1  MKVVVENLTGTLFYVQVGDKGTVADLKREIEVQQKLPYDRLIFILDTDDHDHHRCHLIKD 60

Query: 61 GDDGISLVDFGVQDGSHIYIFFCPLHDDDGD 87
            DG+ LVD+GVQDGSH+Y+F  PL  DDGD
Sbjct: 61 DVDGVLLVDYGVQDGSHVYMFVNPL--DDGD 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6V6_CUCSA9.8e-4081.31Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044270 PE=4 SV=1[more]
M5VZR8_PRUPE1.7e-2055.77Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014632mg PE=4 SV=1[more]
M5XPD8_PRUPE2.1e-1858.24Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024078mg PE=4 SV=1[more]
A0A0L9V6P7_PHAAN2.1e-1850.00Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g117600 PE=4 SV=1[more]
W9SD66_9ROSA2.1e-1853.54Uncharacterized protein OS=Morus notabilis GN=L484_018262 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G32360.12.1e-0939.74 Ubiquitin-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|700188303|gb|KGN43536.1|1.4e-3981.31hypothetical protein Csa_7G044270 [Cucumis sativus][more]
gi|595790187|ref|XP_007198846.1|2.5e-2055.77hypothetical protein PRUPE_ppa014632mg [Prunus persica][more]
gi|645245756|ref|XP_008229029.1|3.2e-2055.77PREDICTED: uncharacterized protein LOC103328418 [Prunus mume][more]
gi|920708352|gb|KOM50349.1|3.0e-1850.00hypothetical protein LR48_Vigan08g117600 [Vigna angularis][more]
gi|596036528|ref|XP_007219706.1|3.0e-1858.24hypothetical protein PRUPE_ppa024078mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G014670.1Lsi11G014670.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 1..75
score: 10
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 1..75
score: 3.8
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..77
score: 6.6
NoneNo IPR availablePANTHERPTHR10666:SF154SUBFAMILY NOT NAMEDcoord: 1..77
score: 6.6

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G014670Wax gourdlsiwgoB131
Lsi11G014670Wax gourdlsiwgoB127
Lsi11G014670Wax gourdlsiwgoB130
Lsi11G014670Bottle gourd (USVL1VR-Ls)lsilsiB022
Lsi11G014670Bottle gourd (USVL1VR-Ls)lsilsiB048
Lsi11G014670Bottle gourd (USVL1VR-Ls)lsilsiB049
Lsi11G014670Cucumber (Gy14) v1cgylsiB021
Lsi11G014670Cucumber (Gy14) v1cgylsiB072
Lsi11G014670Cucurbita maxima (Rimu)cmalsiB198
Lsi11G014670Cucurbita maxima (Rimu)cmalsiB472
Lsi11G014670Cucurbita maxima (Rimu)cmalsiB513
Lsi11G014670Cucurbita maxima (Rimu)cmalsiB561
Lsi11G014670Cucurbita maxima (Rimu)cmalsiB785
Lsi11G014670Cucurbita moschata (Rifu)cmolsiB188
Lsi11G014670Cucurbita moschata (Rifu)cmolsiB457
Lsi11G014670Cucurbita moschata (Rifu)cmolsiB499
Lsi11G014670Cucurbita moschata (Rifu)cmolsiB544
Lsi11G014670Cucurbita moschata (Rifu)cmolsiB581
Lsi11G014670Cucurbita pepo (Zucchini)cpelsiB199
Lsi11G014670Cucurbita pepo (Zucchini)cpelsiB233
Lsi11G014670Cucurbita pepo (Zucchini)cpelsiB606
Lsi11G014670Wild cucumber (PI 183967)cpilsiB011
Lsi11G014670Wild cucumber (PI 183967)cpilsiB099
Lsi11G014670Wild cucumber (PI 183967)cpilsiB430
Lsi11G014670Cucumber (Chinese Long) v2culsiB012
Lsi11G014670Cucumber (Chinese Long) v2culsiB099
Lsi11G014670Melon (DHL92) v3.5.1lsimeB088
Lsi11G014670Melon (DHL92) v3.5.1lsimeB090
Lsi11G014670Melon (DHL92) v3.5.1lsimeB119
Lsi11G014670Watermelon (Charleston Gray)lsiwcgB104
Lsi11G014670Watermelon (Charleston Gray)lsiwcgB089
Lsi11G014670Watermelon (Charleston Gray)lsiwcgB100
Lsi11G014670Watermelon (97103) v1lsiwmB093
Lsi11G014670Watermelon (97103) v1lsiwmB099
Lsi11G014670Watermelon (97103) v1lsiwmB102
Lsi11G014670Cucumber (Gy14) v2cgyblsiB092
Lsi11G014670Cucumber (Gy14) v2cgyblsiB391
Lsi11G014670Melon (DHL92) v3.6.1lsimedB095
Lsi11G014670Melon (DHL92) v3.6.1lsimedB096
Lsi11G014670Melon (DHL92) v3.6.1lsimedB126
Lsi11G014670Silver-seed gourdcarlsiB028
Lsi11G014670Silver-seed gourdcarlsiB307
Lsi11G014670Silver-seed gourdcarlsiB584
Lsi11G014670Silver-seed gourdcarlsiB659
Lsi11G014670Silver-seed gourdcarlsiB795
Lsi11G014670Cucumber (Chinese Long) v3cuclsiB009
Lsi11G014670Cucumber (Chinese Long) v3cuclsiB110
Lsi11G014670Cucumber (Chinese Long) v3cuclsiB453
Lsi11G014670Watermelon (97103) v2lsiwmbB073
Lsi11G014670Watermelon (97103) v2lsiwmbB089
Lsi11G014670Watermelon (97103) v2lsiwmbB092