Cla97C02G028220 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G028220
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Ubiquitin family protein
Location	Cla97Chr02 : 1701443 .. 1701754 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG

Protein sequence

MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGISLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF

Homology

[Close]

BLAST of Cla97C02G028220 vs. NCBI nr
Match: XP_022989504.1 (uncharacterized protein LOC111486561 [Cucurbita maxima])

HSP 1 Score: 167.5 bits (423), Expect = 2.3e-38
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDGI
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVDFG+RDGS IYIFFCPLDD+ GDD++ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLF 103

[Close]

BLAST of Cla97C02G028220 vs. NCBI nr
Match: XP_022930696.1 (uncharacterized protein LOC111437093 [Cucurbita moschata])

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVDFG+RDGS IY+FFCPLD+   DDL+ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLF 103

[Close]

BLAST of Cla97C02G028220 vs. NCBI nr
Match: KGN43536.1 (hypothetical protein Csa_7G044270 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 6.3e-36
Identity = 83/107 (77.57%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAH---HNLPSDRLIFIPDHNRDRLICDGD 60
           MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH   HNLPS RLIFIPDHN +RLI   D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFT-CPDLLLF 104
           DGISLVDFG+RDGSHIYIFF PL D+DGDD+EAR+   T   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFXXTSSSDLLLF 107

[Close]

BLAST of Cla97C02G028220 vs. NCBI nr
Match: XP_022136124.1 (uncharacterized protein LOC111007894 [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-27
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHN--LPSDRLIFIPDHNRDRLICDGDD 60
           MKL V+NLTGSLF+++V+DDATV DL+ +I+AHHN  LPSDRLIFI D N  R I   DD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GISLVDFGVRDGSHIYIFFCPLD-----DNDGDDLE----ARQLFFTCPDLLLF 104
           G SLVD GV+DGSHIYIFF PLD     D+ GDD +    +R  FFTC ++LLF
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of Cla97C02G028220 vs. NCBI nr
Match: OIW08422.1 (hypothetical protein TanjilG_03098 [Lupinus angustifolius])

HSP 1 Score: 106.7 bits (265), Expect = 4.8e-20
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MK+VV+NLTG+LFY++V +DAT+ DL+ +I     LP DRLI + D +R  L+   ++ +
Sbjct: 1   MKVVVENLTGTLFYIQVGNDATIEDLKKEIETQQKLPCDRLILVLDADRSPLMRKDEEKV 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLL 103
           SLVD GV+DGSHIY+FF PLD+ND ++    Q+ FT PD  +
Sbjct: 61  SLVDCGVQDGSHIYLFFIPLDNNDSEN----QVMFTRPDFFI 98

[Close]

BLAST of Cla97C02G028220 vs. TrEMBL
Match: tr|A0A0A0K6V6|A0A0A0K6V6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.2e-36
Identity = 83/107 (77.57%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAH---HNLPSDRLIFIPDHNRDRLICDGD 60
           MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH   HNLPS RLIFIPDHN +RLI   D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFT-CPDLLLF 104
           DGISLVDFG+RDGSHIYIFF PL D+DGDD+EAR+   T   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFXXTSSSDLLLF 107

[Close]

BLAST of Cla97C02G028220 vs. TrEMBL
Match: tr|A0A2N9FN61|A0A2N9FN61_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16475 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
          M++VV+NLTG+LFY+E+ +DAT+ DL+ +I    NLPSDRLI I D NR   + D  DG+
Sbjct: 5  MRVVVENLTGTLFYIELGNDATLADLKKEIEDQQNLPSDRLILILDTNRSHRMNDDGDGV 64

Query: 61 SLVDFGVRDGSHIYIFFCPLDDNDGDDL 89
          SLVD GV+DGSHIY+FF PLDD    D+
Sbjct: 65 SLVDCGVKDGSHIYLFFNPLDDGSTHDV 92

[Close]

BLAST of Cla97C02G028220 vs. TrEMBL
Match: tr|A0A2N9H8K4|A0A2N9H8K4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38608 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
          M++VV+NLTG+LFY+E+ +DAT+ DL+ +I    NLPSDRLI I D NR   + D  DG+
Sbjct: 1  MRVVVENLTGTLFYIELGNDATLADLKKEIEDQQNLPSDRLILILDTNRSHRMNDDGDGV 60

Query: 61 SLVDFGVRDGSHIYIFFCPLDDNDGDDL 89
          SLVD GV+DGSHIY+FF PLDD    D+
Sbjct: 61 SLVDCGVKDGSHIYLFFNPLDDGSTHDV 88

[Close]

BLAST of Cla97C02G028220 vs. TrEMBL
Match: tr|A0A2P6RTX5|A0A2P6RTX5_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0126901 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.2e-20
Identity = 54/97 (55.67%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 1  MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFI--PDHNRDRLICDGDD 60
          MK+VV+NLTG+LF+V+V +DATV DL+ +I     LP DRLI I   DH+R   I D  D
Sbjct: 1  MKVVVENLTGTLFHVQVGNDATVADLKREIETQQKLPYDRLILILHADHHRSYTINDNGD 60

Query: 61 GISLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFF 96
          G+SL+D+GV+DGSHIYIFF PLDD+ G     ++ FF
Sbjct: 61 GVSLIDYGVQDGSHIYIFFNPLDDH-GSSSATQRFFF 96

[Close]

BLAST of Cla97C02G028220 vs. TrEMBL
Match: tr|A0A2P5F648|A0A2P5F648_9ROSA (Ubiquitin domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_108330 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.1e-20
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MK+VV+NLTG+LFY++V +DATV DL+ +I A   LPSDRLI I D N +R I +   G 
Sbjct: 1   MKVVVENLTGTLFYIQVGNDATVDDLKREIEAQEKLPSDRLILILDSNDNRPINNDGGGA 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPD 100
           SLVD GV DGSHIY+FF PLDD       +    FT PD
Sbjct: 61  SLVDHGVHDGSHIYLFFNPLDDGPS---SSHSFVFTLPD 96

[Close]

BLAST of Cla97C02G028220 vs. TAIR10
Match: AT2G32360.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-09
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1  MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIF-IPDHNRDRLICDGDDG 60
          MK+ V+ +TG+    +V +DATV  ++ +I     LP  RLI  I D    RL+ + +D 
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKIAVEVKLPVTRLILVIGDEETRRLVMEDEDD 60

Query: 61 ISLVDFGVRDGSHIYIFF 78
          + L D GV + SHIY+FF
Sbjct: 61 MMLRDLGVGEDSHIYLFF 78

The following BLAST results are available for this feature:

BLAST of Cla97C02G028220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989504.1	2.3e-38	75.73	uncharacterized protein LOC111486561 [Cucurbita maxima]	[more]
XP_022930696.1	1.7e-36	72.82	uncharacterized protein LOC111437093 [Cucurbita moschata]	[more]
KGN43536.1	6.3e-36	77.57	hypothetical protein Csa_7G044270 [Cucumis sativus]	[more]
XP_022136124.1	3.1e-27	61.40	uncharacterized protein LOC111007894 [Momordica charantia]	[more]
OIW08422.1	4.8e-20	50.00	hypothetical protein TanjilG_03098 [Lupinus angustifolius]	[more]

BLAST of Cla97C02G028220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6V6\|A0A0A0K6V6_CUCSA	4.2e-36	77.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1	[more]
tr\|A0A2N9FN61\|A0A2N9FN61_FAGSY	2.4e-20	57.95	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16475 PE=4 SV=1	[more]
tr\|A0A2N9H8K4\|A0A2N9H8K4_FAGSY	2.4e-20	57.95	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38608 PE=4 SV=1	[more]
tr\|A0A2P6RTX5\|A0A2P6RTX5_ROSCH	4.2e-20	55.67	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0126901 PE=4...	[more]
tr\|A0A2P5F648\|A0A2P5F648_9ROSA	7.1e-20	55.56	Ubiquitin domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_1...	[more]

BLAST of Cla97C02G028220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G028220 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32360.1	2.7e-09	39.74	Ubiquitin-like superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-like_domsf
IPR000626	Ubiquitin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G028220.1	Cla97C02G028220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..81 e-value: 6.0E-10 score: 40.5
None	No IPR available	PANTHER	PTHR10666:SF154	SUBFAMILY NOT NAMED	coord: 1..99
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..99
None	No IPR available	CDD	cd01769	UBL	coord: 5..75 e-value: 3.667E-8 score: 44.9506
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..75 score: 10.353
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	SSF54236	Ubiquitin-like	coord: 1..78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G028220	Cla007681	Watermelon (97103) v1	wmwmbB324
Cla97C02G028220	Csa7G044270	Cucumber (Chinese Long) v2	cuwmbB529
Cla97C02G028220	MELO3C018806	Melon (DHL92) v3.5.1	mewmbB178
Cla97C02G028220	ClCG02G001810	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G028220	CSPI07G03850	Wild cucumber (PI 183967)	cpiwmbB553
Cla97C02G028220	Cucsa.148390	Cucumber (Gy14) v1	cgywmbB248
Cla97C02G028220	CmaCh11G018360	Cucurbita maxima (Rimu)	cmawmbB105
Cla97C02G028220	CmoCh11G019100	Cucurbita moschata (Rifu)	cmowmbB094
Cla97C02G028220	Lsi11G014670	Bottle gourd (USVL1VR-Ls)	lsiwmbB086
Cla97C02G028220	CsGy7G003500	Cucumber (Gy14) v2	cgybwmbB502
Cla97C02G028220	MELO3C018806.2	Melon (DHL92) v3.6.1	medwmbB164
Cla97C02G028220	CsaV3_7G003730	Cucumber (Chinese Long) v3	cucwmbB549
Cla97C02G028220	Bhi05G001162	Wax gourd	wgowmbB241

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G028220	Watermelon (97103) v2	wmbwmbB087
Cla97C02G028220	Watermelon (97103) v2	wmbwmbB096
Cla97C02G028220	Silver-seed gourd	carwmbB0027
Cla97C02G028220	Silver-seed gourd	carwmbB0348
Cla97C02G028220	Silver-seed gourd	carwmbB0752
Cla97C02G028220	Silver-seed gourd	carwmbB0915
Cla97C02G028220	Silver-seed gourd	carwmbB0974
Cla97C02G028220	Cucumber (Gy14) v2	cgybwmbB118
Cla97C02G028220	Cucumber (Gy14) v1	cgywmbB069
Cla97C02G028220	Cucurbita maxima (Rimu)	cmawmbB221
Cla97C02G028220	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G028220	Cucurbita maxima (Rimu)	cmawmbB582
Cla97C02G028220	Cucurbita maxima (Rimu)	cmawmbB618
Cla97C02G028220	Cucurbita maxima (Rimu)	cmawmbB883
Cla97C02G028220	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G028220	Cucurbita moschata (Rifu)	cmowmbB552
Cla97C02G028220	Cucurbita moschata (Rifu)	cmowmbB593
Cla97C02G028220	Cucurbita moschata (Rifu)	cmowmbB650
Cla97C02G028220	Wild cucumber (PI 183967)	cpiwmbB030
Cla97C02G028220	Wild cucumber (PI 183967)	cpiwmbB126
Cla97C02G028220	Cucumber (Chinese Long) v3	cucwmbB127
Cla97C02G028220	Cucumber (Chinese Long) v2	cuwmbB029
Cla97C02G028220	Cucumber (Chinese Long) v2	cuwmbB124
Cla97C02G028220	Bottle gourd (USVL1VR-Ls)	lsiwmbB055
Cla97C02G028220	Melon (DHL92) v3.6.1	medwmbB100
Cla97C02G028220	Melon (DHL92) v3.5.1	mewmbB106
Cla97C02G028220	Watermelon (Charleston Gray)	wcgwmbB142
Cla97C02G028220	Watermelon (Charleston Gray)	wcgwmbB184
Cla97C02G028220	Watermelon (97103) v1	wmwmbB122
Cla97C02G028220	Watermelon (97103) v1	wmwmbB329
Cla97C02G028220	Wax gourd	wgowmbB376