MELO3C018806T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018806T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ubiquitin family protein
Location	chr1 : 2927144 .. 2927461 (-)
Sequence length	318

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGTGGTGCAAAATTTGACGGGCTCTTTGTTCTTCGTTGAGGTTGAAGACGATGCCACCGTTTGTGATCTTAGAACTCAAATCACTGCTCACCAACACGATCTTCCTTCTCATCGATTGATCTTCATTCCCGACCACGATACAGAACGTCTCATCTCCCAAACCGATGATGGAATCTCGCTCGTTGATTTTGGCTTACGTGATGGTTCCCACATTTACATCTTTTTCTATCCCCTTGATGACGAAGATGGTGATGATATTGAAGCTCGTCGATTCTTCTTTGCTTCTTCTTCCAATCTTCTTCTCTTCTAA

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACGGGCTCTTTGTTCTTCGTTGAGGTTGAAGACGATGCCACCGTTTGTGATCTTAGAACTCAAATCACTGCTCACCAACACGATCTTCCTTCTCATCGATTGATCTTCATTCCCGACCACGATACAGAACGTCTCATCTCCCAAACCGATGATGGAATCTCGCTCGTTGATTTTGGCTTACGTGATGGTTCCCACATTTACATCTTTTTCTATCCCCTTGATGACGAAGATGGTGATGATATTGAAGCTCGTCGATTCTTCTTTGCTTCTTCTTCCAATCTTCTTCTCTTCTAA

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACGGGCTCTTTGTTCTTCGTTGAGGTTGAAGACGATGCCACCGTTTGTGATCTTAGAACTCAAATCACTGCTCACCAACACGATCTTCCTTCTCATCGATTGATCTTCATTCCCGACCACGATACAGAACGTCTCATCTCCCAAACCGATGATGGAATCTCGCTCGTTGATTTTGGCTTACGTGATGGTTCCCACATTTACATCTTTTTCTATCCCCTTGATGACGAAGATGGTGATGATATTGAAGCTCGTCGATTCTTCTTTGCTTCTTCTTCCAATCTTCTTCTCTTCTAA

Protein sequence

MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDGISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF*

Homology

[Close]

BLAST of MELO3C018806T1 vs. TrEMBL
Match: A0A0A0K6V6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.0e-44
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAH--QHDLPSHRLIFIPDHDTERLISQTD 60
           MKLVVQNLTGSLFFVEVEDDATV DLRTQI AH  QH+LPSHRLIFIPDH+ ERLISQ D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
           DGISLVDFGLRDGSHIYIFF PL D+DGDDIEARRFFF SSS+LLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of MELO3C018806T1 vs. TrEMBL
Match: W9SD66_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018262 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-16
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
          MK+VV+NLTG+LFF++V +DATV +L+ +I A Q +LP  RLI I D +  R I+    G
Sbjct: 1  MKVVVENLTGTLFFIQVGNDATVAELKREIEA-QENLPCDRLILILDANGNRPINDDGSG 60

Query: 61 ISLVDFGLRDGSHIYIFFYPLDD 84
           SLVD G+RDGSHI+IFF PLDD
Sbjct: 61 ASLVDHGVRDGSHIFIFFNPLDD 82

[Close]

BLAST of MELO3C018806T1 vs. TrEMBL
Match: A0A0D2SM94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G179600 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-16
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPD-HDTERLISQTDD 60
          MKLVV+ LTG+LF+V+VEDDAT+ DL+ +I   Q +L   R+I I D  D  +LIS+ DD
Sbjct: 1  MKLVVEILTGNLFYVQVEDDATIDDLKKEIEG-QENLARERMILIVDSKDENQLISKEDD 60

Query: 61 GISLVDFGLRDGSHIYIFFYPLDDE 85
          G SL DFG++DGSHIY+FF PL+ E
Sbjct: 61 GASLADFGVQDGSHIYLFFNPLNIE 84

[Close]

BLAST of MELO3C018806T1 vs. TrEMBL
Match: A0A0L9V6P7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g117600 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-16
Identity = 49/99 (49.49%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
           MK+VV+NLTG+LF++EV++DAT  DL+ +I A Q  LPS RLIF+ D     ++S+ D+ 
Sbjct: 1   MKVVVENLTGALFYIEVKNDATFEDLKREIEA-QEKLPSDRLIFVLDSGECPIMSKEDEN 60

Query: 61  ISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASS 100
           +SL+D G++DGSHIY+FF  +DD+  D+     F F SS
Sbjct: 61  LSLLDSGIQDGSHIYLFFTSVDDDSTDN-----FRFTSS 93

[Close]

BLAST of MELO3C018806T1 vs. TrEMBL
Match: V7AG21_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G105800g PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-16
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
          MK+VV+NLTG+LF +EV +DATV DL+ +I  +Q  LPS R +FI D D   +I++ ++ 
Sbjct: 2  MKVVVENLTGTLFSIEVSNDATVEDLKREIE-NQQKLPSDRFVFILDTDERTVITKEEEK 61

Query: 61 ISLVDFGLRDGSHIYIFFYPLDDEDGDD 89
          +SL+D+G++DGS IY+FF PLDD+  ++
Sbjct: 62 VSLLDYGIQDGSRIYLFFTPLDDDSTEN 88

[Close]

BLAST of MELO3C018806T1 vs. TAIR10
Match: AT2G32360.1 (AT2G32360.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIF-IPDHDTERLISQTDD 60
          MK+ V+ +TG+    +V +DATV  ++ +I A +  LP  RLI  I D +T RL+ + +D
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKI-AVEVKLPVTRLILVIGDEETRRLVMEDED 60

Query: 61 GISLVDFGLRDGSHIYIFF 79
           + L D G+ + SHIY+FF
Sbjct: 61 DMMLRDLGVGEDSHIYLFF 78

[Close]

BLAST of MELO3C018806T1 vs. NCBI nr
Match: gi|700188303|gb|KGN43536.1| (hypothetical protein Csa_7G044270 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.3e-44
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAH--QHDLPSHRLIFIPDHDTERLISQTD 60
           MKLVVQNLTGSLFFVEVEDDATV DLRTQI AH  QH+LPSHRLIFIPDH+ ERLISQ D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
           DGISLVDFGLRDGSHIYIFF PL D+DGDDIEARRFFF SSS+LLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of MELO3C018806T1 vs. NCBI nr
Match: gi|703149137|ref|XP_010109527.1| (hypothetical protein L484_018262 [Morus notabilis])

HSP 1 Score: 92.8 bits (229), Expect = 3.8e-16
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
          MK+VV+NLTG+LFF++V +DATV +L+ +I A Q +LP  RLI I D +  R I+    G
Sbjct: 1  MKVVVENLTGTLFFIQVGNDATVAELKREIEA-QENLPCDRLILILDANGNRPINDDGSG 60

Query: 61 ISLVDFGLRDGSHIYIFFYPLDD 84
           SLVD G+RDGSHI+IFF PLDD
Sbjct: 61 ASLVDHGVRDGSHIFIFFNPLDD 82

[Close]

BLAST of MELO3C018806T1 vs. NCBI nr
Match: gi|593216051|ref|XP_007132568.1| (hypothetical protein PHAVU_011G105800g [Phaseolus vulgaris])

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-16
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
          MK+VV+NLTG+LF +EV +DATV DL+ +I  +Q  LPS R +FI D D   +I++ ++ 
Sbjct: 2  MKVVVENLTGTLFSIEVSNDATVEDLKREIE-NQQKLPSDRFVFILDTDERTVITKEEEK 61

Query: 61 ISLVDFGLRDGSHIYIFFYPLDDEDGDD 89
          +SL+D+G++DGS IY+FF PLDD+  ++
Sbjct: 62 VSLLDYGIQDGSRIYLFFTPLDDDSTEN 88

[Close]

BLAST of MELO3C018806T1 vs. NCBI nr
Match: gi|694400628|ref|XP_009375399.1| (PREDICTED: uncharacterized protein LOC103964214 [Pyrus x bretschneideri])

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-16
Identity = 47/88 (53.41%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTE-----RLIS 60
          MK+VV+NLTG+LF+V+V  +ATV DL+ +I A Q  LP HRLI I D D++     RL++
Sbjct: 3  MKVVVENLTGTLFYVQVGKEATVADLKREIEAQQK-LPYHRLILILDTDSDDRHCSRLMN 62

Query: 61 QTDDGISLVDFGLRDGSHIYIFFYPLDD 84
             DG+ LVD+G++DGSH+Y+F  PLDD
Sbjct: 63 DDADGVLLVDYGVQDGSHVYVFLNPLDD 89

[Close]

BLAST of MELO3C018806T1 vs. NCBI nr
Match: gi|920708352|gb|KOM50349.1| (hypothetical protein LR48_Vigan08g117600 [Vigna angularis])

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-16
Identity = 49/99 (49.49%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
           MK+VV+NLTG+LF++EV++DAT  DL+ +I A Q  LPS RLIF+ D     ++S+ D+ 
Sbjct: 1   MKVVVENLTGALFYIEVKNDATFEDLKREIEA-QEKLPSDRLIFVLDSGECPIMSKEDEN 60

Query: 61  ISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASS 100
           +SL+D G++DGSHIY+FF  +DD+  D+     F F SS
Sbjct: 61  LSLLDSGIQDGSHIYLFFTSVDDDSTDN-----FRFTSS 93

The following BLAST results are available for this feature:

BLAST of MELO3C018806T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V6_CUCSA	3.0e-44	87.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044270 PE=4 SV=1	[more]
W9SD66_9ROSA	2.7e-16	57.83	Uncharacterized protein OS=Morus notabilis GN=L484_018262 PE=4 SV=1	[more]
A0A0D2SM94_GOSRA	3.5e-16	57.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G179600 PE=4 SV=1	[more]
A0A0L9V6P7_PHAAN	3.5e-16	49.49	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g117600 PE=4 SV=1	[more]
V7AG21_PHAVU	3.5e-16	50.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G105800g PE=4 SV=1	[more]

BLAST of MELO3C018806T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32360.1	1.4e-08	40.51	Ubiquitin-like superfamily protein	[more]

BLAST of MELO3C018806T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188303\|gb\|KGN43536.1\|	4.3e-44	87.85	hypothetical protein Csa_7G044270 [Cucumis sativus]	[more]
gi\|703149137\|ref\|XP_010109527.1\|	3.8e-16	57.83	hypothetical protein L484_018262 [Morus notabilis]	[more]
gi\|593216051\|ref\|XP_007132568.1\|	5.0e-16	50.00	hypothetical protein PHAVU_011G105800g [Phaseolus vulgaris]	[more]
gi\|694400628\|ref\|XP_009375399.1\|	5.0e-16	53.41	PREDICTED: uncharacterized protein LOC103964214 [Pyrus x bretschneideri]	[more]
gi\|920708352\|gb\|KOM50349.1\|	5.0e-16	49.49	hypothetical protein LR48_Vigan08g117600 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018806	MELO3C018806	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018806T1	MELO3C018806T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018806T1.cds1	MELO3C018806T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	PROFILE	PS50053	UBIQUITIN_2	coord: 1..76 score: 8
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..76 score: 6.