MELO3C017742.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017742.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	nuclear transport factor 2-like
Location	chr07 : 26728220 .. 26730808 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACCCTCGGCCAACGCTGTCGTCTCCAGTTGTTTCTCTCCTAAACCCCCCCGGCGGAAGAAATTTGCTCTCTCCTACCTCGGCGAATTTCGACGTTACGCGAATGGATCCCGACACGCTGGCTAAAGCATTCGTCGATCATTATTATTCCACTTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAAGAAAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCTACTAATATCGTCGCCAAGCTCACTAGTCTACCCTTCCAGCAGTGCAAGCACAACGTTAGCACCATCGATTGCCAGCCTTCTGGTCCTTCTGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGTTGGCGAACAACATGCTCTCAAATTCAGTCAGGTAATGCGTTGTTCCTTTTAATCGGGATGTTTCTTGATTTGTTTCTAATTTTTGAGCCTTGTGGTTATTGATTTTGGATTTATGGATTTGATCTTTGTTGGATCTAGTGTTGTTTTGGAGTTAGCTGATTGATTTTTGTTATTATAGAGTTGGACTGTGTTGATTGAATTCGCGTTCTGATTCTCTAATTTATGTGGTTCTGCTGTTTAATATCATTATTGGGATCTGTGTAGTTTGCGTTTTCCTTGTTCTTGTAGATCTAGGGGCTTTCGTCGGAATTATATGTATTATAACGGGACACCGAATCTGTAGATCAAGGTTGAGACTGTGATGTGTTTATGTTGTTGCTTCAGTATGTCTCAGATGATTTATGTTTTTGCTTGGGGTTATTGTTTCTGAAAATAAATATTGTGGAACGAGTTCGTCCGGTCAATGGTCATCTTTTTGATTTATCAGCATGGGTGTAGTGAGAATGAGATAACAAAAGGAACGGTTTTTTGATTATTTAACTCAAAAAGTTTATGCTGAACTGATAATTTGTTTAAGTTCATGGTTGCCTTTTTATTTACGGGGATTTCTGAGGTGACATGACACCTGCTCTTCTCTTCAAACAAAAGAATGCTACTGAGTTCGTTTCATGTGTCTTTTATTCCAAGTGAATTCGCTTGTTACAATTTCCTTGGCTTATTGTAGTGATACGTTTGAAGATCATGATCTATATTCTCATTGCAGTTTTTTTACCTTTAATATATCATTTTATGGGAATACAAATGTATGTTCGTCATTTATTTCCTCTAAATTCAAATCATTTTCAAATTCCATGTGGGTTGGAATTTTTTTTAAAGTAACGAGTCGTATTGTTAAAAAAATCTACTTTTTTTTTTTTTATCTTTTATATTCTATGAATTGCTTTTCTGAATATTGATAACCATTGAGAATGTGATACATAGGCATCGCTTTTCTTGTTTGTACTTTGTATTGTTATGAAACAAATTCAATTATGTCAAGTTATGCTTGGAAGAATTGAGAATTTGTTACAACTACAGTATGTCCTAACTAATTGAATTGCTTTGGTGACAACTTTTCTTTTCTTGTTGTTAGTTGTGGTTCTATATTTTTAAACTTTGACTTGTATACTAATGCTATAGTTGCTTAGGCCAACGTCTTAGACCATTTGTTCTATAGGTTGTACTAGCTTAGCTGTGAGTTTCTAAAGTATATCTTGTAATTGATTTTTTCTAACCAAAATGTATTTACTATGTTCATTCAGATGTTCCATTTGATGCCAACCCCACAAGGAAGCTTCTTTGTGCAGAACGACATTTTCCGATTGAACTATGCCTGAAGTTGAGAGTAATCCATGGTGTATTGGGAGACCTGAAATGTCAGGTTATTCAACCAGTTTGTTTATCACCGTTCAGTTTTTTAGACATTTCAAATTGGAACTTGGATTATATTTTATTGTGCTTATGCTTCAATGTGTGCCTATGCAAAGTCGAATTTCTTGGTTGTCATTGAGAATTGATGAAATAGATACTTTCTTCAAATTCAAGTGATTTGCTCAATACTCCCTGCATTCTATCCAAAAAAATGTGAGTTGTACAGTTCGCTATTTATTATAAATTCCAGCCTTAAACTTCCAAAACAAAAAGCAGTACCGGCGTAGACACGCCCGACAAAATACAGGGGTTCAATATAATTTCTTCCCTTAAACAACTAATTTAGATAGATACAAAGTTGTACAAAGCTGTTCAAATGTTTAGTTGTGGCTATAAAAACAAAACCAAAGAGCTGCACATCCAAAGGAACACAACTTAGGTGATGGATGTTGATGAAGCTATGAATCATCATCGAAGTCGGGTAAGCTGACGTGAGGTATGGCAGGTATATTAAGCTGAGGCAATTCAGTAGCTTCAATCTGATGTTGTATTGCTGAAGTTGTCTTTCTTTTAAGAATTGTTCCTAGGGATTTGAATGGATTGCTCAACAACCCATCTCTGAGTTTCAAAATGAAAGACACTTCAGAGATTTGCCAAGCAACAGTGAGGATAATCATTGCTGAAACAAGGCAGTGAGTTACGAAATTTTGCTTCTTCACTTCTTTTAGCTCTTTCACTATCTCCTCTGTTTTAACCTTGATTTCACTTCTTTCCACATTATTTTCTCCTTCAGCCTCTAAGTTTGTCTCA

mRNA sequence

GAACCCTCGGCCAACGCTGTCGTCTCCAGTTGTTTCTCTCCTAAACCCCCCCGGCGGAAGAAATTTGCTCTCTCCTACCTCGGCGAATTTCGACGTTACGCGAATGGATCCCGACACGCTGGCTAAAGCATTCGTCGATCATTATTATTCCACTTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAAGAAAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCTACTAATATCGTCGCCAAGCTCACTAGTCTACCCTTCCAGCAGTGCAAGCACAACGTTAGCACCATCGATTGCCAGCCTTCTGGTCCTTCTGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGTTGGCGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAAGGAAGCTTCTTTGTGCAGAACGACATTTTCCGATTGAACTATGCCTGAAGTTGAGAGTAATCCATGGTGTATTGGGAGACCTGAAATGTCAGGTTATTCAACCAGTTTGTTTATCACCGTTCAGTTTTTTAGACATTTCAAATTGGAACTTGGATTATATTTTATTGTGCTTATGCTTCAATGTGTGCCTATGCAAAGTCGAATTTCTTGGTTGTCATTGAGAATTGATGAAATAGATACTTTCTTCAAATTCAAGTGATTTGCTCAATACTCCCTGCATTCTATCCAAAAAAATGTGAGTTGTACAGTTCGCTATTTATTATAAATTCCAGCCTTAAACTTCCAAAACAAAAAGCAGTACCGGCGTAGACACGCCCGACAAAATACAGGGGTTCAATATAATTTCTTCCCTTAAACAACTAATTTAGATAGATACAAAGTTGTACAAAGCTGTTCAAATGTTTAGTTGTGGCTATAAAAACAAAACCAAAGAGCTGCACATCCAAAGGAACACAACTTAGGTGATGGATGTTGATGAAGCTATGAATCATCATCGAAGTCGGGTAAGCTGACGTGAGGTATGGCAGGTATATTAAGCTGAGGCAATTCAGTAGCTTCAATCTGATGTTGTATTGCTGAAGTTGTCTTTCTTTTAAGAATTGTTCCTAGGGATTTGAATGGATTGCTCAACAACCCATCTCTGAGTTTCAAAATGAAAGACACTTCAGAGATTTGCCAAGCAACAGTGAGGATAATCATTGCTGAAACAAGGCAGTGAGTTACGAAATTTTGCTTCTTCACTTCTTTTAGCTCTTTCACTATCTCCTCTGTTTTAACCTTGATTTCACTTCTTTCCACATTATTTTCTCCTTCAGCCTCTAAGTTTGTCTCA

Coding sequence (CDS)

AACCCTCGGCCAACGCTGTCGTCTCCAGTTGTTTCTCTCCTAAACCCCCCCGGCGGAAGAAATTTGCTCTCTCCTACCTCGGCGAATTTCGACGTTACGCGAATGGATCCCGACACGCTGGCTAAAGCATTCGTCGATCATTATTATTCCACTTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAAGAAAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCTACTAATATCGTCGCCAAGCTCACTAGTCTACCCTTCCAGCAGTGCAAGCACAACGTTAGCACCATCGATTGCCAGCCTTCTGGTCCTTCTGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGTTGGCGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAAGGAAGCTTCTTTGTGCAGAACGACATTTTCCGATTGAACTATGCCTGA

Protein sequence

NPRPTLSSPVVSLLNPPGGRNLLSPTSANFDVTRMDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQCKHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRLNYA

Homology

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BLAST of MELO3C017742.2 vs. NCBI nr
Match: XP_008454013.1 (PREDICTED: nuclear transport factor 2-like [Cucumis melo])

HSP 1 Score: 255.8 bits (652), Expect = 9.8e-65
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC
Sbjct: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL
Sbjct: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120

Query: 155 NYA 158
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of MELO3C017742.2 vs. NCBI nr
Match: KGN53044.1 (hypothetical protein Csa_4G012400 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 4.9e-64
Identity = 125/153 (81.70%), Postives = 135/153 (88.24%), Query Frame = 0


Query: 8   SPVVSLLNPPGGRNLLSPTS---ANFDVTRMDPDTLAKAFVDHYYSTFDANRAGLGNLYQ 67
           SP   ++   GG   LS TS    NF++TRMDPD +AKAFVDHYYSTFDANRA LGNLYQ
Sbjct: 21  SPKPGVVPKHGGTYFLSLTSLTPPNFNLTRMDPDAVAKAFVDHYYSTFDANRANLGNLYQ 80

Query: 68  ENSMLTFEGQKIQGSTNIVAKLTSLPFQQCKHNVSTIDCQPSGPSGGMLVFVSGNLQLVG 127
           +NSMLTFEGQKIQGS NIVAKL+SLPFQQCKH+VST+DCQPSGP+GGMLVFVSGNLQL G
Sbjct: 81  DNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAG 140

Query: 128 EQHALKFSQMFHLMPTPQGSFFVQNDIFRLNYA 158
           EQHALKFSQMFHLMPTPQGSFFVQNDIFRLNYA
Sbjct: 141 EQHALKFSQMFHLMPTPQGSFFVQNDIFRLNYA 173

[Close]

BLAST of MELO3C017742.2 vs. NCBI nr
Match: XP_004152114.2 (PREDICTED: nuclear transport factor 2-like [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 4.3e-60
Identity = 113/123 (91.87%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MDPD +AKAFVDHYYSTFDANRA LGNLYQ+NSMLTFEGQKIQGS NIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           KH+VST+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHLMPTPQGSFFVQNDIFRL
Sbjct: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120

Query: 155 NYA 158
           NYA
Sbjct: 121 NYA 123

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BLAST of MELO3C017742.2 vs. NCBI nr
Match: XP_022979987.1 (nuclear transport factor 2B [Cucurbita maxima])

HSP 1 Score: 236.5 bits (602), Expect = 6.2e-59
Identity = 111/123 (90.24%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MDPD +AKAFVDHYYSTFDANRAGL NLYQ+NSMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDNSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           +H+VST+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 155 NYA 158
           NYA
Sbjct: 121 NYA 123

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BLAST of MELO3C017742.2 vs. NCBI nr
Match: XP_022932693.1 (nuclear transport factor 2B-like [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MDPD +AKAFVDHYYSTFDANR+GL NLYQ+NSMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           +H+VST+DCQPSGPSGG+LVFVSGNLQL GEQHALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122

Query: 155 NYA 158
           NYA
Sbjct: 123 NYA 125

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BLAST of MELO3C017742.2 vs. TAIR10
Match: AT1G27310.1 (nuclear transport factor 2A)

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-55
Identity = 101/123 (82.11%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MDPD +AKAFV+HYYSTFDANR GL +LYQE SMLTFEGQKIQGS NIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           KHN++T+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHL+ + QG+++V NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 120

Query: 155 NYA 158
           NYA
Sbjct: 121 NYA 122

[Close]

BLAST of MELO3C017742.2 vs. TAIR10
Match: AT1G27970.2 (nuclear transport factor 2B)

HSP 1 Score: 210.7 bits (535), Expect = 6.6e-55
Identity = 97/121 (80.17%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 32  VTRMDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPF 91
           +++MDPD ++KAFV+HYYSTFD NR GL  LYQE SMLTFEGQKIQG  +IVAKLTSLPF
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 92  QQCKHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDI 151
           QQCKH++ST+DCQPSGP+ GMLVFVSGNLQL GE+HALKFSQMFHLMPTPQGSF+V NDI
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120

Query: 152 F 153
           F
Sbjct: 121 F 121

[Close]

BLAST of MELO3C017742.2 vs. TAIR10
Match: AT1G11570.2 (NTF2-like)

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-36
Identity = 73/122 (59.84%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 38  DTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQCKHN 97
           + +A AFV+HYY  FD +R+ L +LY   S+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 98  VSTIDCQPS---GPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 157
           +ST+D QPS   G  GG+LVFVSG++QL GE H L+FSQ FHL+P  QGSFFVQN++FRL
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRL 129

[Close]

BLAST of MELO3C017742.2 vs. Swiss-Prot
Match: sp|Q9C7F5|NTF2B_ARATH (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 8.8e-57
Identity = 102/126 (80.95%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 32  VTRMDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPF 91
           +++MDPD ++KAFV+HYYSTFD NR GL  LYQE SMLTFEGQKIQG  +IVAKLTSLPF
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 92  QQCKHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDI 151
           QQCKH++ST+DCQPSGP+ GMLVFVSGNLQL GE+HALKFSQMFHLMPTPQGSF+V NDI
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120

Query: 152 FRLNYA 158
           FRLNYA
Sbjct: 121 FRLNYA 126

[Close]

BLAST of MELO3C017742.2 vs. Swiss-Prot
Match: sp|Q9FZK4|NTF2A_ARATH (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.1e-54
Identity = 101/123 (82.11%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MDPD +AKAFV+HYYSTFDANR GL +LYQE SMLTFEGQKIQGS NIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           KHN++T+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHL+ + QG+++V NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 120

Query: 155 NYA 158
           NYA
Sbjct: 121 NYA 122

[Close]

BLAST of MELO3C017742.2 vs. Swiss-Prot
Match: sp|Q9XJ54|NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-40
Identity = 78/122 (63.93%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MD D +AKAFV+HYY TFD NR  L +LYQ+ SMLTFEGQ+  G+  I  KL SLPF QC
Sbjct: 1   MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
            H+++T+DCQPSGP GGMLVFVSG+L+   ++H LKFSQMF L+P   G+F+VQND+FRL
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRL 120

Query: 155 NY 157
           NY
Sbjct: 121 NY 121

[Close]

BLAST of MELO3C017742.2 vs. Swiss-Prot
Match: sp|Q75AA5|NTF2_ASHGO (Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=NTF2 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-31
Identity = 64/123 (52.03%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MD   LA+ F + YY+ FD +R+ LGNLY++ SMLTFE  ++QG+ +IV KL SLPFQ+ 
Sbjct: 3   MDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKV 62

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           +H ++T+D QP+ P+G +LV ++G+L +  EQ+A +FSQ+FHLMP    S++V NDIFRL
Sbjct: 63  QHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDIFRL 122

Query: 155 NYA 158
           NY+
Sbjct: 123 NYS 124

[Close]

BLAST of MELO3C017742.2 vs. Swiss-Prot
Match: sp|Q96VN3|NTF2_EMENI (Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ntf2 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.8e-31
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 36  DPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQCK 95
           D  ++A+ FV  YY TFD NRAGL  LY+++SMLTFE   IQG   I+ KLTSLPFQ+ +
Sbjct: 3   DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQ 62

Query: 96  HNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRLN 155
           H VST+D QPSG  GG+LV V+G L +  E++ + ++Q F LMP   GS+FV ND+FRL 
Sbjct: 63  HQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLI 122

Query: 156 Y 157
           Y
Sbjct: 123 Y 123

[Close]

BLAST of MELO3C017742.2 vs. TrEMBL
Match: tr|A0A1S3BXM4|A0A1S3BXM4_CUCME (nuclear transport factor 2-like OS=Cucumis melo OX=3656 GN=LOC103494563 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 6.5e-65
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC
Sbjct: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL
Sbjct: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120

Query: 155 NYA 158
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of MELO3C017742.2 vs. TrEMBL
Match: tr|A0A0A0KW20|A0A0A0KW20_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012400 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.2e-64
Identity = 125/153 (81.70%), Postives = 135/153 (88.24%), Query Frame = 0


Query: 8   SPVVSLLNPPGGRNLLSPTS---ANFDVTRMDPDTLAKAFVDHYYSTFDANRAGLGNLYQ 67
           SP   ++   GG   LS TS    NF++TRMDPD +AKAFVDHYYSTFDANRA LGNLYQ
Sbjct: 21  SPKPGVVPKHGGTYFLSLTSLTPPNFNLTRMDPDAVAKAFVDHYYSTFDANRANLGNLYQ 80

Query: 68  ENSMLTFEGQKIQGSTNIVAKLTSLPFQQCKHNVSTIDCQPSGPSGGMLVFVSGNLQLVG 127
           +NSMLTFEGQKIQGS NIVAKL+SLPFQQCKH+VST+DCQPSGP+GGMLVFVSGNLQL G
Sbjct: 81  DNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAG 140

Query: 128 EQHALKFSQMFHLMPTPQGSFFVQNDIFRLNYA 158
           EQHALKFSQMFHLMPTPQGSFFVQNDIFRLNYA
Sbjct: 141 EQHALKFSQMFHLMPTPQGSFFVQNDIFRLNYA 173

[Close]

BLAST of MELO3C017742.2 vs. TrEMBL
Match: tr|A0A2I0L8M2|A0A2I0L8M2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_002493 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.5e-58
Identity = 109/123 (88.62%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MDPD LAKAFV+HYY+TFDANRAGL NLYQE SMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 1   MDPDQLAKAFVEHYYTTFDANRAGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           +H++ST+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 61  QHSISTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 155 NYA 158
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of MELO3C017742.2 vs. TrEMBL
Match: tr|A0A2G9HPG1|A0A2G9HPG1_9LAMI (Nuclear transport factor 2 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07913 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 5.9e-58
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MDPD +AKAFV+HYYSTFDANRAGL NLYQE SMLTFEGQKI GS NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRAGLANLYQEGSMLTFEGQKIMGSQNIVAKLTSLPFQQC 60

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           +H +ST+DCQPSGP+GGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 61  QHQISTVDCQPSGPAGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 155 NYA 158
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of MELO3C017742.2 vs. TrEMBL
Match: tr|A0A2J6KP11|A0A2J6KP11_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X2440 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.7e-57
Identity = 107/123 (86.99%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 35  MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 94
           MDPD L+KAFVDHYYSTFD NRAGL NLYQ+ SMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 1   MDPDALSKAFVDHYYSTFDNNRAGLANLYQDTSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60

Query: 95  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 154
           KH+++T+DCQPSGP+GGMLVFVSGNLQL GEQHAL+FSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 61  KHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALRFSQMFHLMPTPQGSFYVYNDIFRL 120

Query: 155 NYA 158
           NYA
Sbjct: 121 NYA 123

The following BLAST results are available for this feature:

BLAST of MELO3C017742.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454013.1	9.8e-65	100.00	PREDICTED: nuclear transport factor 2-like [Cucumis melo]	[more]
KGN53044.1	4.9e-64	81.70	hypothetical protein Csa_4G012400 [Cucumis sativus]	[more]
XP_004152114.2	4.3e-60	91.87	PREDICTED: nuclear transport factor 2-like [Cucumis sativus]	[more]
XP_022979987.1	6.2e-59	90.24	nuclear transport factor 2B [Cucurbita maxima]	[more]
XP_022932693.1	1.8e-58	89.43	nuclear transport factor 2B-like [Cucurbita moschata]	[more]

BLAST of MELO3C017742.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27310.1	1.7e-55	82.11	nuclear transport factor 2A	[more]
AT1G27970.2	6.6e-55	80.17	nuclear transport factor 2B	[more]
AT1G11570.2	2.3e-36	59.84	NTF2-like	[more]

BLAST of MELO3C017742.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C7F5\|NTF2B_ARATH	8.8e-57	80.95	Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1	[more]
sp\|Q9FZK4\|NTF2A_ARATH	3.1e-54	82.11	Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1	[more]
sp\|Q9XJ54\|NTF2_ORYSJ	2.0e-40	63.93	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2...	[more]
sp\|Q75AA5\|NTF2_ASHGO	2.2e-31	52.03	Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / ...	[more]
sp\|Q96VN3\|NTF2_EMENI	4.8e-31	54.55	Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /...	[more]

BLAST of MELO3C017742.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BXM4\|A0A1S3BXM4_CUCME	6.5e-65	100.00	nuclear transport factor 2-like OS=Cucumis melo OX=3656 GN=LOC103494563 PE=4 SV=...	[more]
tr\|A0A0A0KW20\|A0A0A0KW20_CUCSA	3.2e-64	81.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012400 PE=4 SV=1	[more]
tr\|A0A2I0L8M2\|A0A2I0L8M2_PUNGR	4.5e-58	88.62	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_002493 PE=4 SV=1	[more]
tr\|A0A2G9HPG1\|A0A2G9HPG1_9LAMI	5.9e-58	88.62	Nuclear transport factor 2 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_0791...	[more]
tr\|A0A2J6KP11\|A0A2J6KP11_LACSA	1.7e-57	86.99	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X2440 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032710	NTF2-like_dom_sf
IPR018222	Nuclear_transport_factor_2_euk
IPR002075	NTF2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006869	lipid transport
biological_process	GO:0010351	lithium ion transport
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0016558	protein import into peroxisome matrix
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005635	nuclear envelope
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008536	Ran GTPase binding
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017742.2.1	MELO3C017742.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 41..154 e-value: 1.1E-36 score: 125.9
None	No IPR available	GENE3D	G3DSA:3.10.450.50		coord: 33..157 e-value: 4.8E-43 score: 148.3
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 35..156
None	No IPR available	PANTHER	PTHR12612:SF12	F17L21.10	coord: 35..156
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 40..154 score: 33.928
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 36..156 e-value: 3.92266E-48 score: 152.822
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	SSF54427	NTF2-like	coord: 37..155

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C017742.2	Csa4G012400	Cucumber (Chinese Long) v2	cumedB297
MELO3C017742.2	CSPI04G03060	Wild cucumber (PI 183967)	cpimedB301
MELO3C017742.2	Cucsa.095080	Cucumber (Gy14) v1	cgymedB109
MELO3C017742.2	CmaCh14G014570	Cucurbita maxima (Rimu)	cmamedB278
MELO3C017742.2	CmaCh06G016710	Cucurbita maxima (Rimu)	cmamedB875
MELO3C017742.2	CmoCh06G016640	Cucurbita moschata (Rifu)	cmomedB865
MELO3C017742.2	CmoCh14G014940	Cucurbita moschata (Rifu)	cmomedB264
MELO3C017742.2	Lsi07G000200	Bottle gourd (USVL1VR-Ls)	lsimedB471
MELO3C017742.2	Cp4.1LG08g06170	Cucurbita pepo (Zucchini)	cpemedB955
MELO3C017742.2	Cp4.1LG03g12980	Cucurbita pepo (Zucchini)	cpemedB698
MELO3C017742.2	CsGy4G002930	Cucumber (Gy14) v2	cgybmedB266
MELO3C017742.2	Cla010866	Watermelon (97103) v1	medwmB492
MELO3C017742.2	ClCG07G015450	Watermelon (Charleston Gray)	medwcgB489
MELO3C017742.2	Cla97C07G142420	Watermelon (97103) v2	medwmbB492
MELO3C017742.2	Bhi01G002152	Wax gourd	medwgoB587
MELO3C017742.2	Carg15463	Silver-seed gourd	carmedB0707
MELO3C017742.2	Carg06609	Silver-seed gourd	carmedB0131
MELO3C017742.2	CsaV3_4G003040	Cucumber (Chinese Long) v3	cucmedB307

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C017742.2	Cucumber (Gy14) v2	cgybmedB277
MELO3C017742.2	Watermelon (97103) v1	medwmB536
MELO3C017742.2	Cucumber (Chinese Long) v3	cucmedB315