Carg15463 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15463
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nuclear transport factor 2
Location	Cucurbita_argyrosperma_scaffold_069 : 294575 .. 296584 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCGGCTCAAGCTGTCGTATCCAGGTTTTTCTCTGTAAAACTCTGCGTCGTTCTCAAGCAGGGCGGAGAAAAGTTGGTGTTTTTGCAGTTTACCGGCGGCAGAATCGAACGTTATGGGGATGGATCCCGACGCGGTGGCTAAGGCATTTGTCGATCATTATTACTCCACCTTCGACGCCAATCGAAGCGGTCTTGCTAATCTCTACCAGGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCGCAGAATATTGTCGCCAAGCTCACTAGCCTTCCCTTCCAGCAGTGCCAACACTCCGTTAGCACCGTCGATTGCCAGCCTTCTGGCCCTAGCGGTGGCGTTCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGGTAATGTGTTTTCTTATTGAAGATATTGCTTGATTTGTTGCGGTTTTGTGAGCCTTGTGGCTATTGATGTTGTATTTATGGATTGATCTCGGTTGGATCTTGTGTTCTCTTGGAGTTAGCCGATCGATCCTTATTATAGAGTTTCCTTGACTGAATTGATGTTGTGTTTCTCTAATTTATGCGTTTGTGCTCTTGAAGTACCATTAGGTTTTGGGTAATTTGCGTCGTATTTGTTCATCATGTAGATCTAGGGGTTTTCGTTAGGATTTTTTGTATCATATTTGGATAACGGTACTGTAGATCAAGCTTGAGACCGTGATATGCTTGTTTGCTACTTTTTATTGTATTTGGTATTTGGCGGGTTCGGCACGTCTGAGATGGTTCATGTTTTACTGTTGGGTTCTTAGTTTTTTAGAAGAAATCTTGTGGATTAAGTTCATTTGACCATCTTGCTGATTTATCAGCATGGGCCTAGTTAGAAAAAAAGGCACTTGATTATTTAACTCTGAAAAGTTAGTGCTAAACTTGTCCTTAATGGATGCTGCTTTTATCCTTGGGAATTTGTGAGGCGACTAAGAAAGTTCCCCTGCTGTTATGTTTGAATAAAAACGTTGCCTCGTCCCATGTCTTTCTTCTAGTATCTATGCATGTTATGACTTCTCTAGCTTATCATGATGACATCTTTGAGAGAAAGTAATGACGCATTGAATCTGTGATCATGATCTATATTCTCCTTGACTATTTGGTGGTACTTTTAGGTATAAATTCACGTGGGAATGCAAGAACATGTATTTACTCGTTCTTCATTTACCTTTTCTAATTCAATATATTTCCAAATTGCTTATGGAATGGAATTTGTTTTAGAATGATGAATCATGAAAGCATTGTTAAAACAAATTATGGAATGATGGTATTATGACGGTATATTTTATAGTCTGTGAATAACAATATTAGTGAATATGTATTGTGTGTAACATAATGAAATAGAACACACTGATGAATAGGTATTACTTTCTTGTTTATCTCATTATGAAACAAATTCAATTATGTCGAGAACTTCTGGGAAGAAAGAATTTAGAATTTGTTAATATATGTGCAAGATTGGAAAAGAAGGCACAGTTTTTAATAGGTAACTACAGGATATGAACTTATGGCTGAAGGATATGAACAATTCTCTTTTTTGTTGTTAGCTGTGAATCCATGTTCTTCGTAGGATTTGGTTAGGTTGTTCAACTCTGTCCTTGAGTTTTAAAGGGCTTAAATTGCTTAGTAAATATTTCTAACCAAAATGTATTTACTTTGTGCTTTTAGATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTATGTGCTGAATGACATTTTCCGATTGAACTATGCCTGAAGTTGAGATTAGTTCATGGCATTGGGAGGCCTGAAATGTGAGGTTATTCAACCAGTTTGTTAATCACCCTTCAGTTTTTTTAGACATTTTAAATTGGAACTTGGATTATATCTTATCGTGCTTATGCTTCAAATTGTGTGCCTATGCAAGGTTGAATTTCTTGGTTGTCATTGAGAATTGATGAAGTAGATTACTTTGTTCAAATTC

mRNA sequence

CCTCGGCTCAAGCTGTCGTATCCAGGTTTTTCTCTGTAAAACTCTGCGTCGTTCTCAAGCAGGGCGGAGAAAAGTTGGTGTTTTTGCAGTTTACCGGCGGCAGAATCGAACGTTATGGGGATGGATCCCGACGCGGTGGCTAAGGCATTTGTCGATCATTATTACTCCACCTTCGACGCCAATCGAAGCGGTCTTGCTAATCTCTACCAGGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCGCAGAATATTGTCGCCAAGCTCACTAGCCTTCCCTTCCAGCAGTGCCAACACTCCGTTAGCACCGTCGATTGCCAGCCTTCTGGCCCTAGCGGTGGCGTTCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTATGTGCTGAATGACATTTTCCGATTGAACTATGCCTGAAGTTGAGATTAGTTCATGGCATTGGGAGGCCTGAAATGTGAGGTTATTCAACCAGTTTGTTAATCACCCTTCAGTTTTTTTAGACATTTTAAATTGGAACTTGGATTATATCTTATCGTGCTTATGCTTCAAATTGTGTGCCTATGCAAGGTTGAATTTCTTGGTTGTCATTGAGAATTGATGAAGTAGATTACTTTGTTCAAATTC

Coding sequence (CDS)

ATGGGGATGGATCCCGACGCGGTGGCTAAGGCATTTGTCGATCATTATTACTCCACCTTCGACGCCAATCGAAGCGGTCTTGCTAATCTCTACCAGGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCGCAGAATATTGTCGCCAAGCTCACTAGCCTTCCCTTCCAGCAGTGCCAACACTCCGTTAGCACCGTCGATTGCCAGCCTTCTGGCCCTAGCGGTGGCGTTCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTATGTGCTGAATGACATTTTCCGATTGAACTATGCCTGA

Protein sequence

MGMDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA

Homology

[Close]

BLAST of Carg15463 vs. NCBI nr
Match: XP_022932693.1 (nuclear transport factor 2B-like [Cucurbita moschata])

HSP 1 Score: 256.9 bits (655), Expect = 3.5e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MGMDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQ 60
           MGMDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQ
Sbjct: 1   MGMDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQ 60

Query: 61  QCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF 120
           QCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF
Sbjct: 61  QCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF 120

Query: 121 RLNYA 126
           RLNYA
Sbjct: 121 RLNYA 125

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BLAST of Carg15463 vs. NCBI nr
Match: XP_022972136.1 (nuclear transport factor 2B-like [Cucurbita maxima] >XP_023539086.1 nuclear transport factor 2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.4 bits (651), Expect = 1.0e-64
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MGMDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQ 60
           MGMDPDAVAKAFVDHYYSTFDANR GLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQ
Sbjct: 1   MGMDPDAVAKAFVDHYYSTFDANRGGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQ 60

Query: 61  QCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF 120
           QCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF
Sbjct: 61  QCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF 120

Query: 121 RLNYA 126
           RLNYA
Sbjct: 121 RLNYA 125

[Close]

BLAST of Carg15463 vs. NCBI nr
Match: XP_022979987.1 (nuclear transport factor 2B [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 3.6e-62
Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPDAVAKAFVDHYYSTFDANR+GLANLYQDNSMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDNSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           QHSVSTVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 123 NYA 126
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Carg15463 vs. NCBI nr
Match: XP_023526029.1 (nuclear transport factor 2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 1.8e-61
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPDAVAKAFVDHYYSTFDANR+GLANLYQD SMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           QHSVSTVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 123 NYA 126
           NYA
Sbjct: 121 NYA 123

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BLAST of Carg15463 vs. NCBI nr
Match: XP_022145223.1 (nuclear transport factor 2 [Momordica charantia])

HSP 1 Score: 243.4 bits (620), Expect = 4.0e-61
Identity = 116/123 (94.31%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPDAVAKAFV+HYYSTFDANR+GLANLYQDNSMLTFEGQKIQG+QNIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           QHSV+TVDCQPSGP+GGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSF+VLNDIFRL
Sbjct: 61  QHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVLNDIFRL 120

Query: 123 NYA 126
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Carg15463 vs. TAIR10
Match: AT1G27310.1 (nuclear transport factor 2A)

HSP 1 Score: 216.1 bits (549), Expect = 1.2e-56
Identity = 103/123 (83.74%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGSQNIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           +H+++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHL+ + QG++YV NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 120

Query: 123 NYA 126
           NYA
Sbjct: 121 NYA 122

[Close]

BLAST of Carg15463 vs. TAIR10
Match: AT1G27970.2 (nuclear transport factor 2B)

HSP 1 Score: 213.8 bits (543), Expect = 6.2e-56
Identity = 101/118 (85.59%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF 121
           +H +STVDCQPSGP+ G+LVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDIF
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121

[Close]

BLAST of Carg15463 vs. TAIR10
Match: AT1G11570.2 (NTF2-like)

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-36
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 6   DAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 65
           + VA AFV+HYY  FD +RS L++LY   S+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 66  VSTVDCQPS---GPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 125
           +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ FHL+P  QGSF+V N++FRL
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRL 129

[Close]

BLAST of Carg15463 vs. Swiss-Prot
Match: sp|Q9C7F5|NTF2B_ARATH (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-57
Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           +H +STVDCQPSGP+ G+LVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDIFRL
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123

Query: 123 NYA 126
           NYA
Sbjct: 124 NYA 126

[Close]

BLAST of Carg15463 vs. Swiss-Prot
Match: sp|Q9FZK4|NTF2A_ARATH (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-55
Identity = 103/123 (83.74%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGSQNIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           +H+++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHL+ + QG++YV NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 120

Query: 123 NYA 126
           NYA
Sbjct: 121 NYA 122

[Close]

BLAST of Carg15463 vs. Swiss-Prot
Match: sp|Q9XJ54|NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-41
Identity = 81/122 (66.39%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MD DAVAKAFV+HYY TFD NR  L +LYQD SMLTFEGQ+  G+  I  KL SLPF QC
Sbjct: 1   MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
            H ++TVDCQPSGP GG+LVFVSG+L+   ++H LKFSQMF L+P   G+FYV ND+FRL
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRL 120

Query: 123 NY 125
           NY
Sbjct: 121 NY 121

[Close]

BLAST of Carg15463 vs. Swiss-Prot
Match: sp|Q75AA5|NTF2_ASHGO (Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=NTF2 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.3e-34
Identity = 69/125 (55.20%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 1   MGMDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQ 60
           M MD  A+A+ F + YY+ FD +RS L NLY+D SMLTFE  ++QG+++IV KL SLPFQ
Sbjct: 1   MSMDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQ 60

Query: 61  QCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF 120
           + QH ++T+D QP+ P+G VLV ++G+L +  EQ+A +FSQ+FHLMP    S+YV NDIF
Sbjct: 61  KVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDIF 120

Query: 121 RLNYA 126
           RLNY+
Sbjct: 121 RLNYS 124

[Close]

BLAST of Carg15463 vs. Swiss-Prot
Match: sp|Q96VN3|NTF2_EMENI (Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ntf2 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-32
Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 4   DPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQCQ 63
           D  ++A+ FV  YY TFD NR+GLA LY+D+SMLTFE   IQG   I+ KLTSLPFQ+ Q
Sbjct: 3   DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQ 62

Query: 64  HSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 123
           H VST+D QPSG  GG+LV V+G L +  E++ + ++Q F LMP   GS++VLND+FRL 
Sbjct: 63  HQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLI 122

Query: 124 Y 125
           Y
Sbjct: 123 Y 123

[Close]

BLAST of Carg15463 vs. TrEMBL
Match: tr|V4TN55|V4TN55_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033081mg PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.9e-60
Identity = 113/123 (91.87%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPD+VAKAFV+HYY+TFDANR+GLANLYQ+ SMLTFEGQKIQGSQNIVAKLTSLPFQQC
Sbjct: 1   MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           QHS++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 123 NYA 126
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Carg15463 vs. TrEMBL
Match: tr|A0A2H5NVH9|A0A2H5NVH9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_079890 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.9e-60
Identity = 113/123 (91.87%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPD+VAKAFV+HYY+TFDANR+GLANLYQ+ SMLTFEGQKIQGSQNIVAKLTSLPFQQC
Sbjct: 1   MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           QHS++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 123 NYA 126
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Carg15463 vs. TrEMBL
Match: tr|A0A067H2C0|A0A067H2C0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033259mg PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.9e-60
Identity = 113/123 (91.87%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPD+VAKAFV+HYY+TFDANR+GLANLYQ+ SMLTFEGQKIQGSQNIVAKLTSLPFQQC
Sbjct: 1   MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           QHS++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 123 NYA 126
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Carg15463 vs. TrEMBL
Match: tr|A0A2I0L8M2|A0A2I0L8M2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_002493 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 5.0e-60
Identity = 113/123 (91.87%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPD +AKAFV+HYY+TFDANR+GLANLYQ+ SMLTFEGQKIQGSQNIVAKLTSLPFQQC
Sbjct: 1   MDPDQLAKAFVEHYYTTFDANRAGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           QHS+STVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSISTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 123 NYA 126
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Carg15463 vs. TrEMBL
Match: tr|A0A2G9HPG1|A0A2G9HPG1_9LAMI (Nuclear transport factor 2 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07913 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.5e-60
Identity = 113/123 (91.87%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62
           MDPDAVAKAFV+HYYSTFDANR+GLANLYQ+ SMLTFEGQKI GSQNIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRAGLANLYQEGSMLTFEGQKIMGSQNIVAKLTSLPFQQC 60

Query: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122
           QH +STVDCQPSGP+GG+LVFVSGNLQL GEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHQISTVDCQPSGPAGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 123 NYA 126
           NYA
Sbjct: 121 NYA 123

The following BLAST results are available for this feature:

BLAST of Carg15463 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932693.1	3.5e-65	100.00	nuclear transport factor 2B-like [Cucurbita moschata]	[more]
XP_022972136.1	1.0e-64	99.20	nuclear transport factor 2B-like [Cucurbita maxima] >XP_023539086.1 nuclear tran...	[more]
XP_022979987.1	3.6e-62	96.75	nuclear transport factor 2B [Cucurbita maxima]	[more]
XP_023526029.1	1.8e-61	95.93	nuclear transport factor 2B [Cucurbita pepo subsp. pepo]	[more]
XP_022145223.1	4.0e-61	94.31	nuclear transport factor 2 [Momordica charantia]	[more]

BLAST of Carg15463 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27310.1	1.2e-56	83.74	nuclear transport factor 2A	[more]
AT1G27970.2	6.2e-56	85.59	nuclear transport factor 2B	[more]
AT1G11570.2	1.4e-36	60.66	NTF2-like	[more]

BLAST of Carg15463 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C7F5\|NTF2B_ARATH	1.1e-57	86.18	Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1	[more]
sp\|Q9FZK4\|NTF2A_ARATH	2.2e-55	83.74	Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1	[more]
sp\|Q9XJ54\|NTF2_ORYSJ	2.4e-41	66.39	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2...	[more]
sp\|Q75AA5\|NTF2_ASHGO	8.3e-34	55.20	Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / ...	[more]
sp\|Q96VN3\|NTF2_EMENI	2.0e-32	56.20	Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /...	[more]

BLAST of Carg15463 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|V4TN55\|V4TN55_9ROSI	2.9e-60	91.87	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033081mg PE=4 ...	[more]
tr\|A0A2H5NVH9\|A0A2H5NVH9_CITUN	2.9e-60	91.87	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_079890 PE=4 SV=1	[more]
tr\|A0A067H2C0\|A0A067H2C0_CITSI	2.9e-60	91.87	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033259mg PE=4 SV=1	[more]
tr\|A0A2I0L8M2\|A0A2I0L8M2_PUNGR	5.0e-60	91.87	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_002493 PE=4 SV=1	[more]
tr\|A0A2G9HPG1\|A0A2G9HPG1_9LAMI	8.5e-60	91.87	Nuclear transport factor 2 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_0791...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032710	NTF2-like_dom_sf
IPR018222	Nuclear_transport_factor_2_euk
IPR002075	NTF2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15463-RA	Carg15463-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 8..122 e-value: 3.2E-39 score: 134.1
None	No IPR available	GENE3D	G3DSA:3.10.450.50		coord: 1..125 e-value: 3.9E-45 score: 155.0
None	No IPR available	PANTHER	PTHR12612:SF12	F17L21.10	coord: 3..124
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 3..124
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 8..122 score: 34.966
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 4..124 e-value: 5.95182E-48 score: 151.281
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	SSF54427	NTF2-like	coord: 5..123

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15463	Cla010866	Watermelon (97103) v1	carwmB0690
Carg15463	Csa4G012400	Cucumber (Chinese Long) v2	carcuB0716
Carg15463	MELO3C017742	Melon (DHL92) v3.5.1	carmeB0694
Carg15463	ClCG07G015450	Watermelon (Charleston Gray)	carwcgB0670
Carg15463	CSPI04G03060	Wild cucumber (PI 183967)	carcpiB0730
Carg15463	Cucsa.095080	Cucumber (Gy14) v1	carcgyB0775
Carg15463	CmaCh06G016710	Cucurbita maxima (Rimu)	carcmaB0974
Carg15463	CmoCh14G014940	Cucurbita moschata (Rifu)	carcmoB0946
Carg15463	Lsi07G000200	Bottle gourd (USVL1VR-Ls)	carlsiB634
Carg15463	Cp4.1LG03g12980	Cucurbita pepo (Zucchini)	carcpeB0973
Carg15463	CsGy4G002930	Cucumber (Gy14) v2	carcgybB0693
Carg15463	MELO3C017742.2	Melon (DHL92) v3.6.1	carmedB0707
Carg15463	CsaV3_4G003040	Cucumber (Chinese Long) v3	carcucB0733
Carg15463	Cla97C07G142420	Watermelon (97103) v2	carwmbB0722
Carg15463	Bhi01G002152	Wax gourd	carwgoB0815

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15463	Carg06609	Silver-seed gourd	carcarB142

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15463	Silver-seed gourd	carcarB013
Carg15463	Cucurbita maxima (Rimu)	carcmaB0972
Carg15463	Cucurbita moschata (Rifu)	carcmoB0947
Carg15463	Cucurbita pepo (Zucchini)	carcpeB0974
Carg15463	Watermelon (97103) v2	carwmbB0721
Carg15463	Wax gourd	carwgoB0813