CmoCh06G016640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G016640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nuclear transport factor, putative
Location	Cmo_Chr06 : 11525088 .. 11530200 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAGATGATGGAAAGTTACCCAGATTTTCTCTCAGCTTCATCGTCTTCAACCTCCCTCTCTTTCCAGAAAATGCTGATTTCTCGAGCTTCCGAGCCCACCGGAATCCATGGAAGTCATTTCCGGGAGGCGGGCATCTCCGGTGGGTTTCCGTTGTTTCCCGACGTGTCGGGGAGCTACATGTCTGTGGGTACGAGGAGTAGTATGAAGGAAGATATGGTTTCGGTTAGTAAAGGGTCAGCGGTGGAGGTGGTGGAGGGAGGAGCGGAGACGACGGAGATGACGGCGGCGAGACAGGGAGATAATGATAAGAAAAAGAAGACGAGAAGCCGGAGATTTGCTTTTCAAACAAGGAGTCAAGTTGATATTCTTGATGATGGATATCGATGGAGAAAGTATGGACAGAAGGGTGTGAAGAACAACAAATTCCCAAGGTAACCTAATTAGTCAATAATTATTTCTTAGCATTAAAATCAACCCCTTAAAAGTCAAATTTTATGGTTAAGTATTGAATAATACCTCCAATTATTAGTAGAAATGTCGTTTTTGAACCGTCACAAATCATATAAACATTAAAAGAAAGAGTCGAGAGAGATTTCTCTCCATTAGCTAAATAAGATTGGGTACAGGGATTATATTTCCCGGCCCTAACCCTTACTACACTGCACCCTAATAGAGAAAAACAACCCGATTCTTGAAAAATTCTCGTCTCGATCCCTGTAAGAATAAATGAAAAATTTTGTGTGAATAGAGAATGAAATAGGAGGCGGAGACGGGGAACCCTTAGCACACTGCACCCTAATAGAGAAAAACAACCCAATTCTTGGAAAATTCTTGTTGGATCCCTGTAAGAATAAATGAAAATTTTTGTGAGAATAGAGAATGAAATAGGAGGCGAGGACGGAGACGGGGAACCCTTATCACATTGCACCCTAATAGAGAAAAACAACCCAATTCTCGTCTGGATCCCTGTAAGAATAAATGAAAATTTTTGTGAGAATAGAGAATGAAATAGGAGGCGAAGACAGGGACGAGGAACCCTTATCACACTGTACCCTAATAGAGAAAAACAACCCAATTCTCAAAAAAATCTTGTCTCGATCCCTGTAAGAATAAATAAATGTTTTTGTGAGAATAAGAATAAAATAGGAGGTGAGGACGGAGACTGGGAACCCTTACCACACAGCACCTTAATAGAGAAAAACAACTAAATTCTCGAAAAATTCTCGTCTCAATCCCTATAAGAATAAATTAACTTTTTTTGTGAGAATAGAGAATGAAATAGGAGGCGAGGACAGGGACGGGGAACCCTTACCACACTGCACCCGAACAGGGAAAGACAATCCAATACTCGAAAAATTCTTGTCGCCGTCCACGTAAGAATAAATGGGAAATTTTGTGGGAATAGAGAATGAAATAGGAATTATTTGTTTGGTATTATATGTTGTAAGAAAAGGCTTGGTTAATGAATTGCAGAAGCTACTATAAATGCACACACCAGGGGTGCAAGGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGAGTGGTGGTGACAACTTACGAAGGCATTCACTCTCATCCCATTCAGAAATCCACAGATAACTTCGAGCATATTTTGACCCAGATGCAAATTTACACTTCTTATTGATTAATTTACAAATATTTACTCGTGTAAAATTTATTACATTTTTTCTATACATATAAACAACTATTTATTTTAGGATGTTTATTGAAATTTTGTTCGAGAAATTTAAAAAAAAAAACGATAAATAATTCATAATTAATGTATTATTTATATTTATATTTATTTCATTTATAACAATGTATTATCCATTACATAAAATTTTAAAATAATAAATAGTATACGATAAGGTTGGATTACTTGTTTTTGTAGTCCTAGTTTTTTATGAGAGGATGATGTTATGATCAATGCAATCAAGAACGGATCGTCGTTGTGCCGTACATTTGAGTAACTACATGCAATTATAGAAAATTGTGTCAGTCAATTTTTATAGGTCTAGGTCTTTGTTCATCGTATGAGGTTGGGTGTTGGAGTCAAACATAATAAATTAGATTTAGATGTCGGGCAATCGAGATTGAATAAGATCGAAATTGAGTAGTGCCACTTGCATGAGCGAGGTGTTGTCTAGGGTTCGTATGGATGTGGGTTACATTCACGAGTTGAAATTCTTTGCTCGTGTCGATTGCAGAGTTAAAAAATAAAAAAATAAAATTCTATGGAATTTAAATATATTCATTTTGATTTTATATTATTTTTATAGTATTTAAAAATTTTGAAACTAAATAATTATAAAATATAAAAACTAAACTGTTACACTTCCATTAAAATCTTAAAACGCAATTTTAGGACTCAAAAAAATTTAAACCTAAATTTATTATATTTAAAAAAAAAAAGAAAAAAAGAAACGAACCGGACGGGTCTAACCCTCGATATTGTCGACATTATAAATTCCCAATTAACCCTCCATCTCTCGAACCCTCGGCTCAAGCTGTCGTATCCAGGTTTTTCTCTGTAAAACTCTGCGTCGTTCTCAAGCAGGGCGGAGAAAAGTTGGTGTTTTTGCAGTTTACCGGCGGCAGAATCGAACGTTATGGGGATGGATCCCGACGCGGTGGCTAAGGCATTTGTCGATCATTATTACTCCACCTTCGACGCCAATCGAAGCGGTCTTGCTAATCTCTACCAGGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCGCAGAATATTGTCGCCAAGCTCACTAGCCTTCCCTTCCAGCAGTGCCAACACTCCGTTAGCACCGTCGATTGCCAGCCTTCTGGCCCTAGCGGTGGCGTGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGGTAATGTGTTTTCTTATTGAAGATATTGCTTGATTTGTTGCGGTTTCGTGAGCCTTGTGGCTATTGATGTTGTATTTATGGATTGATCTCGGTTGGATCTTGTGTTCTCTTGGAGTTAGCCGATCGATCCTTATTATAGAGTTTCCTTGACTGAATTGATGTTGTGTTTCTCTAATTTATGCGTTTGTGCTCTTGAAGTATCATTAGGTTTTGGGTAATTTGCGTCGTATTTGTTCATCATGTAGATCTAGGGTTTTCGTTAGGATTTTTTGTATCATATTTGGATAACGGTACTGTAGATCAAGCTTGAGACCGTGATATGCTTGTTTGCTACTTTTTATTGTATTTGGTATTTGGCGGGTTCGGCACGTCGAGATGGTTCATGTTTTACTATTGGGTTCTTAGTTTTTTAGAAGAAATCTTGTGGATTAAGTTCATTTGACCATCTTGCTGATTTATCAGCATGGGCCTAGTTAGAAAAAAAGGCACTTGATTATTTAACTCTGAAAAGTTAGTGCTAAACTTGTCCTTAATGGATGCTGCTTTTATCCTTGGGAATTTGTGAGGCGACTAAGAAAGTTCCCCTGCTGTTATGTTTGAATAAAAACGTTGCCTCGTCCCATGTCTTTCTTCTAGTATCTATGCATGTTATGACTTCTCTAGCTTATCATGATGACATCTTTGAGAGAAAGTAATGACGCATTGAATCTGTGATCATGATCTATATTCTCCTTGACTATTTGTTTTAGAATGATGAATCATGAAAGCATTGTTAAAACAAATTAAGGAATGATGGTATTTATGACGGTATATTTTATAGTCTGTGAATAACAATATTAGTGAATATGTATTGTGTGTAACATAATGAAATAGAACACACTGATGAATAGGTATTACTTTCTTGTTTATCTCATTATGAAACAAATTCAATTATGTCGAGAACTTCTGGGAAGAAAGAATTTAGAATTTGTTAATATATGTGCAAGATTGGAAAAGAAGGCACAGTTTTTAATAGGTAACTACAGGACATGAACTTATGGCTGAACGATATGAACAATTCTCTTTTTTGTTGTTAGCTGTGAATCCATGTTCTTCGTAGGATTTGGTTAGGTTGTTCAACTCTGTCCTTGAGTTTTAAAGGGCTTAAATTGCTTAGTAAATATTTCTAACCAAAATGTATTTACTTTGTGCTTTTAGATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTATGTGCTGAATGACATTTTCCGACTGAACTATGCCTGAAGTTGAGATTAGTTCATGGCATTGGGAGGCCTGAAATGTGAGGTTATTCAACCAGTTTGTTAATCACCCTTCAGTTTTTTTAGACATTTTAAATTGGAACTTGGATTATATCTTATCGTGCTTATGCTTCAAATTGTGTGCCTATGCAAGGTTGAATTTCTTGGTTGTCATTGAGAATTGATGAAGTAGATTACTTTGTTCAAATTCTAGTGATTTGCTCAATACTCTTCCAATTCAAGTGATGAAACAGTGTGTGCTTATTCGAATGAGAGTGTATTATATGCAATTATACCTGTGGAAAAAATAATGTTTTATATTCATTCATCACATAATGTTGATAGAACTTCCACGACATGGAAATTGAAATATGAATGTTCAGAATAAAATTGATTCCACCACAACGGCATCACACAATGGAGCATGTTGGTGATCGAATGGAATGGAATGGGAAGGACGTTTGATGTTGATCGAGTGAGAGAAAGCCAAGCTGAAAGTAAAGGCAATAGCTAAACGGGATCCCGAGTAAAGGCAATAGCTAACGGGATCCTGAGCTTACAAGTACTTGTTTGTAGATGCTATAATAGAGGTGTCTATGAAATAGGGATGAGAAATCGTTTTCGTTTATGTCACCTATTTCAATCTCTATTGATGAAATTTTCATTTATTTTTGTAGGGAGAGTTGGAAAATTTGGATTGGGTTCTTGACAGGAATTATTTTTACTAGGGAGGGAGTATAATTTTCTTTTATTTTTCATTCTTACCCATTCGAAGTAAGTACTTGTAAGGTTGGAATCTTGCAAGTTAAATAGATGGTAGATTATGAGTTATGAGTTAATCCAGGAATTATTTATATAAATGGTTGTGATTATTTATATAATTAGTTGAAG

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAGATGATGGAAAGTTACCCAGATTTTCTCTCAGCTTCATCGTCTTCAACCTCCCTCTCTTTCCAGAAAATGCTGATTTCTCGAGCTTCCGAGCCCACCGGAATCCATGGAAGTCATTTCCGGGAGGCGGGCATCTCCGGTGGGTTTCCGTTGTTTCCCGACGTGTCGGGGAGCTACATGTCTGTGGGTACGAGGAGTAGTATGAAGGAAGATATGGTTTCGGTTAGTAAAGGGTCAGCGGTGGAGGTGGTGGAGGGAGGAGCGGAGACGACGGAGATGACGGCGGCGAGACAGGGAGATAATGATAAGAAAAAGAAGACGAGAAGCCGGAGATTTGCTTTTCAAACAAGGAGTCAAGTTGATATTCTTGATGATGGATATCGATGGAGAAAGTATGGACAGAAGGGTGTGAAGAACAACAAATTCCCAAGGGCGGAGAAAAGTTGGTGTTTTTGCAGTTTACCGGCGGCAGAATCGAACGTTATGGGGATGGATCCCGACGCGGTGGCTAAGGCATTTGTCGATCATTATTACTCCACCTTCGACGCCAATCGAAGCGGTCTTGCTAATCTCTACCAGGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCGCAGAATATTGTCGCCAAGCTCACTAGCCTTCCCTTCCAGCAGTGCCAACACTCCGTTAGCACCGTCGATTGCCAGCCTTCTGGCCCTAGCGGTGGCGTGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTATGTGCTGAATGACATTTTCCGACTGAACTATGCCTGAAGTTGAGATTAGTTCATGGCATTGGGAGGCCTGAAATGTGAGGTTATTCAACCAGTTTGTTAATCACCCTTCAGTTTTTTTAGACATTTTAAATTGGAACTTGGATTATATCTTATCGTGCTTATGCTTCAAATTGTGTGCCTATGCAAGGTTGAATTTCTTGGTTGTCATTGAGAATTGATGAAGTAGATTACTTTGTTCAAATTCTAGTGATTTGCTCAATACTCTTCCAATTCAAGTGATGAAACAGTGTGTGCTTATTCGAATGAGAGTGTATTATATGCAATTATACCTGTGGAAAAAATAATGTTTTATATTCATTCATCACATAATGTTGATAGAACTTCCACGACATGGAAATTGAAATATGAATGTTCAGAATAAAATTGATTCCACCACAACGGCATCACACAATGGAGCATGTTGGTGATCGAATGGAATGGAATGGGAAGGACGTTTGATGTTGATCGAGTGAGAGAAAGCCAAGCTGAAAGTAAAGGCAATAGCTAAACGGGATCCCGAGTAAAGGCAATAGCTAACGGGATCCTGAGCTTACAAGTACTTGTTTGTAGATGCTATAATAGAGGTGTCTATGAAATAGGGATGAGAAATCGTTTTCGTTTATGTCACCTATTTCAATCTCTATTGATGAAATTTTCATTTATTTTTGTAGGGAGAGTTGGAAAATTTGGATTGGGTTCTTGACAGGAATTATTTTTACTAGGGAGGGAGTATAATTTTCTTTTATTTTTCATTCTTACCCATTCGAAGTAAGTACTTGTAAGGTTGGAATCTTGCAAGTTAAATAGATGGTAGATTATGAGTTATGAGTTAATCCAGGAATTATTTATATAAATGGTTGTGATTATTTATATAATTAGTTGAAG

Coding sequence (CDS)

ATGATGGAAAGTTACCCAGATTTTCTCTCAGCTTCATCGTCTTCAACCTCCCTCTCTTTCCAGAAAATGCTGATTTCTCGAGCTTCCGAGCCCACCGGAATCCATGGAAGTCATTTCCGGGAGGCGGGCATCTCCGGTGGGTTTCCGTTGTTTCCCGACGTGTCGGGGAGCTACATGTCTGTGGGTACGAGGAGTAGTATGAAGGAAGATATGGTTTCGGTTAGTAAAGGGTCAGCGGTGGAGGTGGTGGAGGGAGGAGCGGAGACGACGGAGATGACGGCGGCGAGACAGGGAGATAATGATAAGAAAAAGAAGACGAGAAGCCGGAGATTTGCTTTTCAAACAAGGAGTCAAGTTGATATTCTTGATGATGGATATCGATGGAGAAAGTATGGACAGAAGGGTGTGAAGAACAACAAATTCCCAAGGGCGGAGAAAAGTTGGTGTTTTTGCAGTTTACCGGCGGCAGAATCGAACGTTATGGGGATGGATCCCGACGCGGTGGCTAAGGCATTTGTCGATCATTATTACTCCACCTTCGACGCCAATCGAAGCGGTCTTGCTAATCTCTACCAGGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCGCAGAATATTGTCGCCAAGCTCACTAGCCTTCCCTTCCAGCAGTGCCAACACTCCGTTAGCACCGTCGATTGCCAGCCTTCTGGCCCTAGCGGTGGCGTGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTATGTGCTGAATGACATTTTCCGACTGAACTATGCCTGA

Homology

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BLAST of CmoCh06G016640 vs. Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.4e-57
Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
           +H +STVDCQPSGP+ G+LVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDIFRL
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123

Query: 283 NYA 286
           NYA
Sbjct: 124 NYA 126

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BLAST of CmoCh06G016640 vs. Swiss-Prot
Match: NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.4e-41
Identity = 81/122 (66.39%), Postives = 95/122 (77.87%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MD DAVAKAFV+HYY TFD NR  L +LYQD SMLTFEGQ+  G+  I  KL SLPF QC
Sbjct: 1   MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
            H ++TVDCQPSGP GG+LVFVSG+L+   ++H LKFSQMF L+P   G+FYV ND+FRL
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRL 120

Query: 283 NY 285
           NY
Sbjct: 121 NY 121

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BLAST of CmoCh06G016640 vs. Swiss-Prot
Match: NTF2_ASHGO (Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-33
Identity = 69/125 (55.20%), Postives = 95/125 (76.00%), Query Frame = 1


Query: 161 MGMDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQ 220
           M MD  A+A+ F + YY+ FD +RS L NLY+D SMLTFE  ++QG+++IV KL SLPFQ
Sbjct: 1   MSMDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQ 60

Query: 221 QCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF 280
           + QH ++T+D QP+ P+G VLV ++G+L +  EQ+A +FSQ+FHLMP    S+YV NDIF
Sbjct: 61  KVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDIF 120

Query: 281 RLNYA 286
           RLNY+
Sbjct: 121 RLNYS 124

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BLAST of CmoCh06G016640 vs. Swiss-Prot
Match: NTF2_EMENI (Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.6e-32
Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 164 DPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQCQ 223
           D  ++A+ FV  YY TFD NR+GLA LY+D+SMLTFE   IQG   I+ KLTSLPFQ+ Q
Sbjct: 3   DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQ 62

Query: 224 HSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 283
           H VST+D QPSG  GG+LV V+G L +  E++ + ++Q F LMP   GS++VLND+FRL 
Sbjct: 63  HQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLI 122

Query: 284 Y 285
           Y
Sbjct: 123 Y 123

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BLAST of CmoCh06G016640 vs. Swiss-Prot
Match: NTF2_CANGA (Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NTF2 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.0e-32
Identity = 66/125 (52.80%), Postives = 95/125 (76.00%), Query Frame = 1


Query: 161 MGMDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQ 220
           M MD +A+A+ F + YY+ FD++RS L NLY+D SMLTFE  ++QG+++IV KL SLPFQ
Sbjct: 1   MSMDFNALAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFETSQLQGAKSIVEKLVSLPFQ 60

Query: 221 QCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF 280
           +  H ++T+D QP+ P+G VLV ++G+L +  EQ+  +FSQ+FHL+P    S+YV NDIF
Sbjct: 61  KVAHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIP-DGNSYYVFNDIF 120

Query: 281 RLNYA 286
           RLNY+
Sbjct: 121 RLNYS 124

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BLAST of CmoCh06G016640 vs. TrEMBL
Match: V4TN55_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033081mg PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.6e-60
Identity = 113/123 (91.87%), Postives = 122/123 (99.19%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPD+VAKAFV+HYY+TFDANR+GLANLYQ+ SMLTFEGQKIQGSQNIVAKLTSLPFQQC
Sbjct: 1   MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
           QHS++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 283 NYA 286
           NYA
Sbjct: 121 NYA 123

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BLAST of CmoCh06G016640 vs. TrEMBL
Match: A0A067H2C0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033259mg PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.6e-60
Identity = 113/123 (91.87%), Postives = 122/123 (99.19%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPD+VAKAFV+HYY+TFDANR+GLANLYQ+ SMLTFEGQKIQGSQNIVAKLTSLPFQQC
Sbjct: 1   MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
           QHS++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 283 NYA 286
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of CmoCh06G016640 vs. TrEMBL
Match: A0A0A0KW20_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012400 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 8.1e-60
Identity = 116/134 (86.57%), Postives = 123/134 (91.79%), Query Frame = 1


Query: 152 SLPAAESNVMGMDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIV 211
           SL     N+  MDPDAVAKAFVDHYYSTFDANR+ L NLYQDNSMLTFEGQKIQGS NIV
Sbjct: 40  SLTPPNFNLTRMDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIV 99

Query: 212 AKLTSLPFQQCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQG 271
           AKL+SLPFQQC+HSVSTVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQG
Sbjct: 100 AKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQG 159

Query: 272 SFYVLNDIFRLNYA 286
           SF+V NDIFRLNYA
Sbjct: 160 SFFVQNDIFRLNYA 173

[Close]

BLAST of CmoCh06G016640 vs. TrEMBL
Match: A5BM29_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03790 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.4e-59
Identity = 113/123 (91.87%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPDAVAKAFV+HYYSTFDANR+ LANLYQ++SMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRANLANLYQESSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
           QHS++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 283 NYA 286
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of CmoCh06G016640 vs. TrEMBL
Match: A0A059D9S7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03507 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.8e-59
Identity = 112/123 (91.06%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPDAVAKAFV+HYYSTFDANR GLANLYQ+ SMLTFEGQKIQGSQ+IV+KLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRGGLANLYQEGSMLTFEGQKIQGSQSIVSKLTSLPFQQC 60

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
           QHS++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQ+FHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQLFHLMPTPQGSFYVLNDIFRL 120

Query: 283 NYA 286
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of CmoCh06G016640 vs. TAIR10
Match: AT1G27310.1 (AT1G27310.1 nuclear transport factor 2A)

HSP 1 Score: 215.7 bits (548), Expect = 3.7e-56
Identity = 103/123 (83.74%), Postives = 116/123 (94.31%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGSQNIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
           +H+++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHL+ + QG++YV NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 120

Query: 283 NYA 286
           NYA
Sbjct: 121 NYA 122

[Close]

BLAST of CmoCh06G016640 vs. TAIR10
Match: AT1G27970.2 (AT1G27970.2 nuclear transport factor 2B)

HSP 1 Score: 213.4 bits (542), Expect = 1.8e-55
Identity = 101/118 (85.59%), Postives = 110/118 (93.22%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF 281
           +H +STVDCQPSGP+ G+LVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDIF
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121

[Close]

BLAST of CmoCh06G016640 vs. TAIR10
Match: AT1G11570.2 (AT1G11570.2 NTF2-like)

HSP 1 Score: 149.4 bits (376), Expect = 3.3e-36
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1


Query: 166 DAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 225
           + VA AFV+HYY  FD +RS L++LY   S+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 226 VSTVDCQPS---GPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 285
           +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ FHL+P  QGSF+V N++FRL
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRL 129

[Close]

BLAST of CmoCh06G016640 vs. TAIR10
Match: AT5G13080.1 (AT5G13080.1 WRKY DNA-binding protein 75)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-14
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 1


Query: 66  SMKEDMVSVSKGSAVEVVEGGAETTEMTA--ARQGDNDKKKKTRSRRFAFQTRSQVDILD 125
           S+    +S+   S  E+ +G  E++++ +    +     KKK + +R+AFQTRSQVDILD
Sbjct: 8   SLYAPFLSLKSHSKPELHQGEEESSKVRSEGCSKSVESSKKKGKKQRYAFQTRSQVDILD 67

Query: 126 DGYRWRKYGQKGVKNNKFPRA 145
           DGYRWRKYGQK VKNNKFPR+
Sbjct: 68  DGYRWRKYGQKAVKNNKFPRS 88

[Close]

BLAST of CmoCh06G016640 vs. TAIR10
Match: AT3G01970.1 (AT3G01970.1 WRKY DNA-binding protein 45)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-14
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 83  VEGGAETTEMTAARQGDNDKKKKTRSRRFAFQTRSQVDILDDGYRWRKYGQKGVKNNKFP 142
           V+  A+ T  ++  +  + KKKK R  R+AFQTRSQVDILDDGYRWRKYGQK VKNN FP
Sbjct: 26  VDNSAQPTT-SSEEKPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFP 85

Query: 143 RA 145
           R+
Sbjct: 86  RS 86

[Close]

BLAST of CmoCh06G016640 vs. NCBI nr
Match: gi|747101535|ref|XP_011098902.1| (PREDICTED: nuclear transport factor 2-like [Sesamum indicum])

HSP 1 Score: 240.7 bits (613), Expect = 3.1e-60
Identity = 114/123 (92.68%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPDAVAKAFV+HYYSTFDANR+GLANLYQD SMLTFEGQKI GSQNIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRAGLANLYQDGSMLTFEGQKIMGSQNIVAKLTSLPFQQC 60

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
           QH+++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHAITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 283 NYA 286
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of CmoCh06G016640 vs. NCBI nr
Match: gi|567890971|ref|XP_006438006.1| (hypothetical protein CICLE_v10033081mg [Citrus clementina])

HSP 1 Score: 240.0 bits (611), Expect = 5.2e-60
Identity = 113/123 (91.87%), Postives = 122/123 (99.19%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPD+VAKAFV+HYY+TFDANR+GLANLYQ+ SMLTFEGQKIQGSQNIVAKLTSLPFQQC
Sbjct: 1   MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
           QHS++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 283 NYA 286
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of CmoCh06G016640 vs. NCBI nr
Match: gi|700197886|gb|KGN53044.1| (hypothetical protein Csa_4G012400 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 116/134 (86.57%), Postives = 123/134 (91.79%), Query Frame = 1


Query: 152 SLPAAESNVMGMDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIV 211
           SL     N+  MDPDAVAKAFVDHYYSTFDANR+ L NLYQDNSMLTFEGQKIQGS NIV
Sbjct: 40  SLTPPNFNLTRMDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIV 99

Query: 212 AKLTSLPFQQCQHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQG 271
           AKL+SLPFQQC+HSVSTVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQG
Sbjct: 100 AKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQG 159

Query: 272 SFYVLNDIFRLNYA 286
           SF+V NDIFRLNYA
Sbjct: 160 SFFVQNDIFRLNYA 173

[Close]

BLAST of CmoCh06G016640 vs. NCBI nr
Match: gi|225425388|ref|XP_002276841.1| (PREDICTED: nuclear transport factor 2 [Vitis vinifera])

HSP 1 Score: 238.0 bits (606), Expect = 2.0e-59
Identity = 113/123 (91.87%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPDAVAKAFV+HYYSTFDANR+ LANLYQ++SMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRANLANLYQESSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
           QHS++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 283 NYA 286
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of CmoCh06G016640 vs. NCBI nr
Match: gi|702278137|ref|XP_010044826.1| (PREDICTED: nuclear transport factor 2 [Eucalyptus grandis])

HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59
Identity = 112/123 (91.06%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 163 MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 222
           MDPDAVAKAFV+HYYSTFDANR GLANLYQ+ SMLTFEGQKIQGSQ+IV+KLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRGGLANLYQEGSMLTFEGQKIQGSQSIVSKLTSLPFQQC 60

Query: 223 QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 282
           QHS++TVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQ+FHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQLFHLMPTPQGSFYVLNDIFRL 120

Query: 283 NYA 286
           NYA
Sbjct: 121 NYA 123

The following BLAST results are available for this feature:

BLAST of CmoCh06G016640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NTF2_ARATH	2.4e-57	86.18	Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1	[more]
NTF2_ORYSJ	5.4e-41	66.39	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1	[more]
NTF2_ASHGO	1.9e-33	55.20	Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / ...	[more]
NTF2_EMENI	4.6e-32	56.20	Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /...	[more]
NTF2_CANGA	6.0e-32	52.80	Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM...	[more]

BLAST of CmoCh06G016640 vs. TrEMBL


Match Name	E-value	Identity	Description
V4TN55_9ROSI	3.6e-60	91.87	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033081mg PE=4 SV=1	[more]
A0A067H2C0_CITSI	3.6e-60	91.87	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033259mg PE=4 SV=1	[more]
A0A0A0KW20_CUCSA	8.1e-60	86.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012400 PE=4 SV=1	[more]
A5BM29_VITVI	1.4e-59	91.87	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03790 PE=4 SV=...	[more]
A0A059D9S7_EUCGR	1.8e-59	91.06	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03507 PE=4 SV=1	[more]

BLAST of CmoCh06G016640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27310.1	3.7e-56	83.74	nuclear transport factor 2A	[more]
AT1G27970.2	1.8e-55	85.59	nuclear transport factor 2B	[more]
AT1G11570.2	3.3e-36	60.66	NTF2-like	[more]
AT5G13080.1	1.6e-14	50.62	WRKY DNA-binding protein 75	[more]
AT3G01970.1	3.5e-14	62.90	WRKY DNA-binding protein 45	[more]

BLAST of CmoCh06G016640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|747101535\|ref\|XP_011098902.1\|	3.1e-60	92.68	PREDICTED: nuclear transport factor 2-like [Sesamum indicum]	[more]
gi\|567890971\|ref\|XP_006438006.1\|	5.2e-60	91.87	hypothetical protein CICLE_v10033081mg [Citrus clementina]	[more]
gi\|700197886\|gb\|KGN53044.1\|	1.2e-59	86.57	hypothetical protein Csa_4G012400 [Cucumis sativus]	[more]
gi\|225425388\|ref\|XP_002276841.1\|	2.0e-59	91.87	PREDICTED: nuclear transport factor 2 [Vitis vinifera]	[more]
gi\|702278137\|ref\|XP_010044826.1\|	2.6e-59	91.06	PREDICTED: nuclear transport factor 2 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002075	NTF2
IPR003657	WRKY_dom
IPR018222	Nuclear_transport_factor_2_euk

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006810	transport
biological_process	GO:0010351	lithium ion transport
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
biological_process	GO:0006869	lipid transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005635	nuclear envelope
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008536	Ran GTPase binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G016640.1	CmoCh06G016640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 168..282 score: 3.4
IPR003657	WRKY domain	GENE3D	G3DSA:2.20.25.80		coord: 107..144 score: 2.4
IPR003657	WRKY domain	PFAM	PF03106	WRKY	coord: 123..143 score: 4.
IPR003657	WRKY domain	SMART	SM00774	WRKY_cls	coord: 122..184 score: 1.
IPR003657	WRKY domain	PROFILE	PS50811	WRKY	coord: 117..144 score: 12
IPR003657	WRKY domain	unknown	SSF118290	WRKY DNA-binding domain	coord: 114..152 score: 7.45
IPR018222	Nuclear transport factor 2, eukaryote	PROFILE	PS50177	NTF2_DOMAIN	coord: 168..282 score: 34
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 159..285 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G016640	Cucsa.095080	Cucumber (Gy14) v1	cgycmoB0199
CmoCh06G016640	CmaCh14G014570	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G016640	CmaCh06G016710	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G016640	Cla010866	Watermelon (97103) v1	cmowmB788
CmoCh06G016640	Csa4G012400	Cucumber (Chinese Long) v2	cmocuB823
CmoCh06G016640	MELO3C017742	Melon (DHL92) v3.5.1	cmomeB761
CmoCh06G016640	ClCG07G015440	Watermelon (Charleston Gray)	cmowcgB749
CmoCh06G016640	CSPI04G03060	Wild cucumber (PI 183967)	cmocpiB833
CmoCh06G016640	Lsi07G000190	Bottle gourd (USVL1VR-Ls)	cmolsiB768
CmoCh06G016640	Cp4.1LG03g12920	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G016640	Cp4.1LG08g06170	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G016640	MELO3C017742.2	Melon (DHL92) v3.6.1	cmomedB865
CmoCh06G016640	CsaV3_4G003030	Cucumber (Chinese Long) v3	cmocucB0971
CmoCh06G016640	Cla97C07G142410	Watermelon (97103) v2	cmowmbB840
CmoCh06G016640	CsGy4G002930	Cucumber (Gy14) v2	cgybcmoB535
CmoCh06G016640	Carg15462	Silver-seed gourd	carcmoB0947
CmoCh06G016640	Carg06608	Silver-seed gourd	carcmoB0167

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G016640	CmoCh14G014930	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:

None