MELO3C017419 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C017419
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA ligase
Locationchr2 : 22570786 .. 22570992 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCTAGCATGCGTATGGGAAGAGAAAGAGCAAGAGCTCGGAAGGCAACAAGCGCCAGGAACATGTCCTTTCTGTCAAGGAAAAGTGTACGCCATTGATGTGGAAAGACAATGGAAGCTCTGTTTCCTTCCTCTCTGTCTCAAGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAATTGTGCCACTGGTAG

mRNA sequence

ATGTGGCTAGCATGCGTATGGGAAGAGAAAGAGCAAGAGCTCGGAAGGCAACAAGCGCCAGGAACATGTCCTTTCTGTCAAGGAAAAGTGTACGCCATTGATGTGGAAAGACAATGGAAGCTCTGTTTCCTTCCTCTCTGTCTCAAGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAATTGTGCCACTGGTAG

Coding sequence (CDS)

ATGTGGCTAGCATGCGTATGGGAAGAGAAAGAGCAAGAGCTCGGAAGGCAACAAGCGCCAGGAACATGTCCTTTCTGTCAAGGAAAAGTGTACGCCATTGATGTGGAAAGACAATGGAAGCTCTGTTTCCTTCCTCTCTGTCTCAAGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAATTGTGCCACTGGTAG

Protein sequence

MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCSRRLELCHW*
Homology
[Close]
BLAST of MELO3C017419 vs. TrEMBL
Match: A0A0A0LUS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426700 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 7.5e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]
BLAST of MELO3C017419 vs. TrEMBL
Match: A0A151RW15_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_031643 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-22
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          MW   +W+E+E+ELGRQQAPGTCP+C GKV A+DVE QW+LCFLP+C K+KRK+ CT CS
Sbjct: 1  MWFLYLWDEEEKELGRQQAPGTCPYCAGKVEAMDVEIQWRLCFLPMCFKLKRKFFCTNCS 60

Query: 61 RRLEL 66
          RRLEL
Sbjct: 61 RRLEL 65

[Close]
BLAST of MELO3C017419 vs. TrEMBL
Match: A0A067J9B5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06884 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-21
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          M  A + +E+E+ELGRQQAPG+CP+C GKV A+DVE +W  CFLP+C KIKRKY CTLC+
Sbjct: 1  MCFALLCDEEEKELGRQQAPGSCPYCGGKVQAMDVETKWSFCFLPICYKIKRKYFCTLCA 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]
BLAST of MELO3C017419 vs. TrEMBL
Match: A0A0B2QSL0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_032280 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-21
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 1   MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
           MW   V++E+++ELGRQQAPG+CP+CQGKV A+DVE QW+LCFLP+C KIKRKY CT C+
Sbjct: 51  MWFMHVFDEEKKELGRQQAPGSCPYCQGKVEAMDVEIQWRLCFLPMCFKIKRKYFCTSCA 110

Query: 61  RRLEL 66
           RRLEL
Sbjct: 111 RRLEL 115

[Close]
BLAST of MELO3C017419 vs. TrEMBL
Match: I1MH47_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G167300 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-21
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 1   MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
           MW   V++E+++ELGRQQAPG+CP+CQGKV A+DVE QW+LCFLP+C KIKRKY CT C+
Sbjct: 51  MWFMHVFDEEKKELGRQQAPGSCPYCQGKVEAMDVEIQWRLCFLPMCFKIKRKYFCTSCA 110

Query: 61  RRLEL 66
           RRLEL
Sbjct: 111 RRLEL 115

[Close]
BLAST of MELO3C017419 vs. TAIR10
Match: AT5G57123.1 (AT5G57123.1 unknown protein)

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-22
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          M L C+ +E+E ELGRQQAPG+CP+C GKV  +DVER+W  CF+PLC KIKRKY C+ C 
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 61 RRLELCH 68
          RRL L H
Sbjct: 61 RRLVLYH 67

[Close]
BLAST of MELO3C017419 vs. TAIR10
Match: AT4G29905.1 (AT4G29905.1 unknown protein)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-19
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          M L  V+ E++ ELGRQQAPG CP+C GKV A+D+E +W  CFLPLC K+KRKY C+ C 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 61 RRLEL 66
          R L L
Sbjct: 61 RHLVL 65

[Close]
BLAST of MELO3C017419 vs. TAIR10
Match: AT5G10695.1 (AT5G10695.1 unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 5.5e-14
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          M L  V ++ E+ +GR  APG CP+C G V  +DV  QW+ CF+PL  K KR++LC+ C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 RRL 64
          +RL
Sbjct: 61 KRL 63

[Close]
BLAST of MELO3C017419 vs. NCBI nr
Match: gi|449457203|ref|XP_004146338.1| (PREDICTED: uncharacterized protein LOC101203895 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-35
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]
BLAST of MELO3C017419 vs. NCBI nr
Match: gi|657998311|ref|XP_008391556.1| (PREDICTED: uncharacterized protein LOC103453765 [Malus domestica])

HSP 1 Score: 114.4 bits (285), Expect = 8.0e-23
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACV +E+E+ELGRQQAPG+CP C+GKV A+DVE Q KLCFLPLC KIKRKY CTLCS
Sbjct: 1  MWLACVCDEEEKELGRQQAPGSCPHCRGKVQAVDVEAQRKLCFLPLCFKIKRKYFCTLCS 60

Query: 61 RRLEL 66
          RRL L
Sbjct: 61 RRLVL 65

[Close]
BLAST of MELO3C017419 vs. NCBI nr
Match: gi|1012335409|gb|KYP46739.1| (hypothetical protein KK1_031643 [Cajanus cajan])

HSP 1 Score: 112.1 bits (279), Expect = 4.0e-22
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          MW   +W+E+E+ELGRQQAPGTCP+C GKV A+DVE QW+LCFLP+C K+KRK+ CT CS
Sbjct: 1  MWFLYLWDEEEKELGRQQAPGTCPYCAGKVEAMDVEIQWRLCFLPMCFKLKRKFFCTNCS 60

Query: 61 RRLEL 66
          RRLEL
Sbjct: 61 RRLEL 65

[Close]
BLAST of MELO3C017419 vs. NCBI nr
Match: gi|645234557|ref|XP_008223864.1| (PREDICTED: uncharacterized protein LOC103323638 [Prunus mume])

HSP 1 Score: 110.9 bits (276), Expect = 8.8e-22
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          MWL  V +E+E+ELGRQQAPG+CP C GKV A+DVE QWKLCFLP+C KIKRKY CTLC+
Sbjct: 1  MWLVYVCDEEEKELGRQQAPGSCPHCGGKVQAVDVEAQWKLCFLPMCFKIKRKYFCTLCA 60

Query: 61 RRLEL 66
          RRL L
Sbjct: 61 RRLVL 65

[Close]
BLAST of MELO3C017419 vs. NCBI nr
Match: gi|1009105882|ref|XP_015896304.1| (PREDICTED: uncharacterized protein LOC107430004 [Ziziphus jujuba])

HSP 1 Score: 110.9 bits (276), Expect = 8.8e-22
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1 

Query: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60
          MW+  V EE+E+ELGRQQAPG+CP C GKV AIDVE QWK CFLPLC KIKRKY CTLC+
Sbjct: 1  MWMVYVCEEEEKELGRQQAPGSCPHCGGKVQAIDVETQWKFCFLPLCFKIKRKYFCTLCA 60

Query: 61 RRLEL 66
          RRL L
Sbjct: 61 RRLVL 65

The following BLAST results are available for this feature:
BLAST of MELO3C017419 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUS9_CUCSA7.5e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426700 PE=4 SV=1[more]
A0A151RW15_CAJCA2.8e-2270.77Uncharacterized protein OS=Cajanus cajan GN=KK1_031643 PE=4 SV=1[more]
A0A067J9B5_JATCU1.4e-2168.66Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06884 PE=4 SV=1[more]
A0A0B2QSL0_GLYSO1.4e-2170.77Uncharacterized protein OS=Glycine soja GN=glysoja_032280 PE=4 SV=1[more]
I1MH47_SOYBN1.4e-2170.77Uncharacterized protein OS=Glycine max GN=GLYMA_15G167300 PE=4 SV=1[more]
BLAST of MELO3C017419 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G57123.12.5e-2264.18 unknown protein[more]
AT4G29905.11.5e-1960.00 unknown protein[more]
AT5G10695.15.5e-1447.62 unknown protein[more]
BLAST of MELO3C017419 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457203|ref|XP_004146338.1|1.1e-35100.00PREDICTED: uncharacterized protein LOC101203895 [Cucumis sativus][more]
gi|657998311|ref|XP_008391556.1|8.0e-2378.46PREDICTED: uncharacterized protein LOC103453765 [Malus domestica][more]
gi|1012335409|gb|KYP46739.1|4.0e-2270.77hypothetical protein KK1_031643 [Cajanus cajan][more]
gi|645234557|ref|XP_008223864.1|8.8e-2273.85PREDICTED: uncharacterized protein LOC103323638 [Prunus mume][more]
gi|1009105882|ref|XP_015896304.1|8.8e-2275.38PREDICTED: uncharacterized protein LOC107430004 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017419T1MELO3C017419T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33320FAMILY NOT NAMEDcoord: 1..65
score: 4.6
NoneNo IPR availablePANTHERPTHR33320:SF7SUBFAMILY NOT NAMEDcoord: 1..65
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C017419Cla018863Watermelon (97103) v1mewmB289
MELO3C017419Cla022752Watermelon (97103) v1mewmB288
MELO3C017419ClCG11G011590Watermelon (Charleston Gray)mewcgB234
MELO3C017419ClCG06G013690Watermelon (Charleston Gray)mewcgB254
MELO3C017419Cla97C06G123150Watermelon (97103) v2mewmbB261
MELO3C017419Bhi02G000533Wax gourdmewgoB307
MELO3C017419CSPI01G20640Wild cucumber (PI 183967)cpimeB043
MELO3C017419Cucsa.088950Cucumber (Gy14) v1cgymeB104
MELO3C017419Cucsa.282070Cucumber (Gy14) v1cgymeB471
MELO3C017419CmaCh05G007230Cucurbita maxima (Rimu)cmameB720
MELO3C017419CmoCh11G003580Cucurbita moschata (Rifu)cmomeB109
MELO3C017419CmoCh05G007610Cucurbita moschata (Rifu)cmomeB711
MELO3C017419Lsi06G012130Bottle gourd (USVL1VR-Ls)lsimeB397
MELO3C017419Carg15217Silver-seed gourdcarmeB0785
MELO3C017419Carg09059Silver-seed gourdcarmeB0599
MELO3C017419CsaV3_1G031970Cucumber (Chinese Long) v3cucmeB043
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C017419Cucumber (Chinese Long) v3cucmeB114
MELO3C017419Watermelon (97103) v2mewmbB241
MELO3C017419Melon (DHL92) v3.5.1memeB110
MELO3C017419Cucurbita maxima (Rimu)cmameB067
MELO3C017419Cucurbita maxima (Rimu)cmameB120
MELO3C017419Cucurbita maxima (Rimu)cmameB153
MELO3C017419Cucurbita moschata (Rifu)cmomeB059
MELO3C017419Cucurbita moschata (Rifu)cmomeB142
MELO3C017419Wild cucumber (PI 183967)cpimeB108
MELO3C017419Cucumber (Chinese Long) v2cumeB042
MELO3C017419Cucumber (Chinese Long) v2cumeB108
MELO3C017419Cucurbita pepo (Zucchini)cpemeB330
MELO3C017419Cucurbita pepo (Zucchini)cpemeB615
MELO3C017419Cucurbita pepo (Zucchini)cpemeB749
MELO3C017419Bottle gourd (USVL1VR-Ls)lsimeB100
MELO3C017419Cucumber (Gy14) v2cgybmeB039
MELO3C017419Cucumber (Gy14) v2cgybmeB093