Cucsa.282070 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.282070
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	BnaC09g52710D protein
Location	scaffold02641 : 190231 .. 190496 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGTTCGCTCGCTCGGTCGCTCCGCCGCAGAATCTCCTCTCTCGTTAGCTGTAGAAGAATGTGGCTAGCATGCGTGTGGGAAGAGAAAGAGCAAGAGCTCGGAAGGCAACAAGCGCCAGGAACATGTCCTTTCTGTCAAGGAAAAGTGTACGCCATTGATGTGGAAAGGCAATGGAAGCTCTGTTTTCTTCCTCTCTGTCTCAAGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAATTGTGCCACTGGTAG

mRNA sequence

ATTGTTCGCTCGCTCGGTCGCTCCGCCGCAGAATCTCCTCTCTCGTTAGCTGTAGAAGAATGTGGCTAGCATGCGTGTGGGAAGAGAAAGAGCAAGAGCTCGGAAGGCAACAAGCGCCAGGAACATGTCCTTTCTGTCAAGGAAAAGTGTACGCCATTGATGTGGAAAGGCAATGGAAGCTCTGTTTTCTTCCTCTCTGTCTCAAGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAATTGTGCCACTGGTAG

Coding sequence (CDS)

ATTGTTCGCTCGCTCGGTCGCTCCGCCGCAGAATCTCCTCTCTCGTTAGCTGTAGAAGAATGTGGCTAGCATGCGTGTGGGAAGAGAAAGAGCAAGAGCTCGGAAGGCAACAAGCGCCAGGAACATGTCCTTTCTGTCAAGGAAAAGTGTACGCCATTGATGTGGAAAGGCAATGGAAGCTCTGTTTTCTTCCTCTCTGTCTCAAGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAATTGTGCCACTGGTAG

Protein sequence

CSLARSLRRRISSLVSCRRMWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCSRRLELCHW*

Homology

[Close]

BLAST of Cucsa.282070 vs. TrEMBL
Match: A0A0A0LUS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426700 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.5e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 20 MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 79
          MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 80 RRLELCHW 88
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Cucsa.282070 vs. TrEMBL
Match: A0A0B2QSL0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_032280 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 8   RRRISSLVSCRRMWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCL 67
           RR   S  S R+MW   V++E+++ELGRQQAPG+CP+CQGKV A+DVE QW+LCFLP+C 
Sbjct: 39  RRSFGSKPSRRKMWFMHVFDEEKKELGRQQAPGSCPYCQGKVEAMDVEIQWRLCFLPMCF 98

Query: 68  KIKRKYLCTLCSRRLEL 85
           KIKRKY CT C+RRLEL
Sbjct: 99  KIKRKYFCTSCARRLEL 115

[Close]

BLAST of Cucsa.282070 vs. TrEMBL
Match: I1MH47_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G167300 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 8   RRRISSLVSCRRMWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCL 67
           RR   S  S R+MW   V++E+++ELGRQQAPG+CP+CQGKV A+DVE QW+LCFLP+C 
Sbjct: 39  RRSFGSKPSRRKMWFMHVFDEEKKELGRQQAPGSCPYCQGKVEAMDVEIQWRLCFLPMCF 98

Query: 68  KIKRKYLCTLCSRRLEL 85
           KIKRKY CT C+RRLEL
Sbjct: 99  KIKRKYFCTSCARRLEL 115

[Close]

BLAST of Cucsa.282070 vs. TrEMBL
Match: I1L1F0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G060700 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.3e-23
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 8   RRRISSLVSCRRMWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCL 67
           +R   S  S R+MW   V++E+++ELGRQQAPG+CP+CQGKV A+DVE QW+LCFLP+C 
Sbjct: 39  KRSFGSKPSRRKMWFMYVFDEEKKELGRQQAPGSCPYCQGKVEAMDVEIQWRLCFLPMCF 98

Query: 68  KIKRKYLCTLCSRRLEL 85
           KIKRK+ CT C+RRLEL
Sbjct: 99  KIKRKFFCTSCARRLEL 115

[Close]

BLAST of Cucsa.282070 vs. TrEMBL
Match: A0A151RW15_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_031643 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.5e-22
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 20 MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 79
          MW   +W+E+E+ELGRQQAPGTCP+C GKV A+DVE QW+LCFLP+C K+KRK+ CT CS
Sbjct: 1  MWFLYLWDEEEKELGRQQAPGTCPYCAGKVEAMDVEIQWRLCFLPMCFKLKRKFFCTNCS 60

Query: 80 RRLEL 85
          RRLEL
Sbjct: 61 RRLEL 65

[Close]

BLAST of Cucsa.282070 vs. TAIR10
Match: AT5G57123.1 (AT5G57123.1 unknown protein)

HSP 1 Score: 101.3 bits (251), Expect = 3.1e-22
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1


Query: 20 MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 79
          M L C+ +E+E ELGRQQAPG+CP+C GKV  +DVER+W  CF+PLC KIKRKY C+ C 
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 80 RRLELCH 87
          RRL L H
Sbjct: 61 RRLVLYH 67

[Close]

BLAST of Cucsa.282070 vs. TAIR10
Match: AT4G29905.1 (AT4G29905.1 unknown protein)

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-19
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1


Query: 20 MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 79
          M L  V+ E++ ELGRQQAPG CP+C GKV A+D+E +W  CFLPLC K+KRKY C+ C 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 80 RRLEL 85
          R L L
Sbjct: 61 RHLVL 65

[Close]

BLAST of Cucsa.282070 vs. TAIR10
Match: AT5G10695.1 (AT5G10695.1 unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 7.0e-14
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 20 MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 79
          M L  V ++ E+ +GR  APG CP+C G V  +DV  QW+ CF+PL  K KR++LC+ C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 80 RRL 83
          +RL
Sbjct: 61 KRL 63

[Close]

BLAST of Cucsa.282070 vs. NCBI nr
Match: gi|449457203|ref|XP_004146338.1| (PREDICTED: uncharacterized protein LOC101203895 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 20 MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 79
          MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 80 RRLELCHW 88
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Cucsa.282070 vs. NCBI nr
Match: gi|571519215|ref|XP_003546438.2| (PREDICTED: uncharacterized protein LOC100817592 [Glycine max])

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-23
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 8   RRRISSLVSCRRMWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCL 67
           RR   S  S R+MW   V++E+++ELGRQQAPG+CP+CQGKV A+DVE QW+LCFLP+C 
Sbjct: 39  RRSFGSKPSRRKMWFMHVFDEEKKELGRQQAPGSCPYCQGKVEAMDVEIQWRLCFLPMCF 98

Query: 68  KIKRKYLCTLCSRRLEL 85
           KIKRKY CT C+RRLEL
Sbjct: 99  KIKRKYFCTSCARRLEL 115

[Close]

BLAST of Cucsa.282070 vs. NCBI nr
Match: gi|657998311|ref|XP_008391556.1| (PREDICTED: uncharacterized protein LOC103453765 [Malus domestica])

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 20 MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 79
          MWLACV +E+E+ELGRQQAPG+CP C+GKV A+DVE Q KLCFLPLC KIKRKY CTLCS
Sbjct: 1  MWLACVCDEEEKELGRQQAPGSCPHCRGKVQAVDVEAQRKLCFLPLCFKIKRKYFCTLCS 60

Query: 80 RRLEL 85
          RRL L
Sbjct: 61 RRLVL 65

[Close]

BLAST of Cucsa.282070 vs. NCBI nr
Match: gi|955339271|ref|XP_006587000.2| (PREDICTED: uncharacterized protein LOC100819590 [Glycine max])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 8   RRRISSLVSCRRMWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCL 67
           +R   S  S R+MW   V++E+++ELGRQQAPG+CP+CQGKV A+DVE QW+LCFLP+C 
Sbjct: 39  KRSFGSKPSRRKMWFMYVFDEEKKELGRQQAPGSCPYCQGKVEAMDVEIQWRLCFLPMCF 98

Query: 68  KIKRKYLCTLCSRRLEL 85
           KIKRK+ CT C+RRLEL
Sbjct: 99  KIKRKFFCTSCARRLEL 115

[Close]

BLAST of Cucsa.282070 vs. NCBI nr
Match: gi|1012335409|gb|KYP46739.1| (hypothetical protein KK1_031643 [Cajanus cajan])

HSP 1 Score: 112.1 bits (279), Expect = 5.1e-22
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 20 MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 79
          MW   +W+E+E+ELGRQQAPGTCP+C GKV A+DVE QW+LCFLP+C K+KRK+ CT CS
Sbjct: 1  MWFLYLWDEEEKELGRQQAPGTCPYCAGKVEAMDVEIQWRLCFLPMCFKLKRKFFCTNCS 60

Query: 80 RRLEL 85
          RRLEL
Sbjct: 61 RRLEL 65

The following BLAST results are available for this feature:

BLAST of Cucsa.282070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUS9_CUCSA	9.5e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426700 PE=4 SV=1	[more]
A0A0B2QSL0_GLYSO	1.9e-23	66.23	Uncharacterized protein OS=Glycine soja GN=glysoja_032280 PE=4 SV=1	[more]
I1MH47_SOYBN	1.9e-23	66.23	Uncharacterized protein OS=Glycine max GN=GLYMA_15G167300 PE=4 SV=1	[more]
I1L1F0_SOYBN	9.3e-23	63.64	Uncharacterized protein OS=Glycine max GN=GLYMA_09G060700 PE=4 SV=1	[more]
A0A151RW15_CAJCA	3.5e-22	70.77	Uncharacterized protein OS=Cajanus cajan GN=KK1_031643 PE=4 SV=1	[more]

BLAST of Cucsa.282070 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57123.1	3.1e-22	64.18	unknown protein	[more]
AT4G29905.1	1.9e-19	60.00	unknown protein	[more]
AT5G10695.1	7.0e-14	47.62	unknown protein	[more]

BLAST of Cucsa.282070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457203\|ref\|XP_004146338.1\|	1.4e-35	100.00	PREDICTED: uncharacterized protein LOC101203895 [Cucumis sativus]	[more]
gi\|571519215\|ref\|XP_003546438.2\|	2.7e-23	66.23	PREDICTED: uncharacterized protein LOC100817592 [Glycine max]	[more]
gi\|657998311\|ref\|XP_008391556.1\|	1.0e-22	78.46	PREDICTED: uncharacterized protein LOC103453765 [Malus domestica]	[more]
gi\|955339271\|ref\|XP_006587000.2\|	1.3e-22	63.64	PREDICTED: uncharacterized protein LOC100819590 [Glycine max]	[more]
gi\|1012335409\|gb\|KYP46739.1\|	5.1e-22	70.77	hypothetical protein KK1_031643 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.282070.1	Cucsa.282070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	FAMILY NOT NAMED	coord: 12..84 score: 2.1
None	No IPR available	PANTHER	PTHR33320:SF7	SUBFAMILY NOT NAMED	coord: 12..84 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.282070	Cla018863	Watermelon (97103) v1	cgywmB517
Cucsa.282070	MELO3C017419	Melon (DHL92) v3.5.1	cgymeB471
Cucsa.282070	ClCG06G013690	Watermelon (Charleston Gray)	cgywcgB488
Cucsa.282070	CSPI01G20640	Wild cucumber (PI 183967)	cgycpiB424
Cucsa.282070	CmoCh11G003580	Cucurbita moschata (Rifu)	cgycmoB0781
Cucsa.282070	Lsi06G012130	Bottle gourd (USVL1VR-Ls)	cgylsiB457
Cucsa.282070	MELO3C017419.2	Melon (DHL92) v3.6.1	cgymedB468
Cucsa.282070	CsaV3_1G031970	Cucumber (Chinese Long) v3	cgycucB432
Cucsa.282070	Cla97C06G123150	Watermelon (97103) v2	cgywmbB491
Cucsa.282070	Bhi02G000533	Wax gourd	cgywgoB571
Cucsa.282070	Carg09059	Silver-seed gourd	carcgyB0675
Cucsa.282070	Carg15217	Silver-seed gourd	carcgyB0900

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.282070	Wax gourd	cgywgoB570
Cucsa.282070	Cucurbita maxima (Rimu)	cgycmaB0785
Cucsa.282070	Cucurbita maxima (Rimu)	cgycmaB0786
Cucsa.282070	Cucurbita moschata (Rifu)	cgycmoB0780
Cucsa.282070	Cucumber (Chinese Long) v2	cgycuB401
Cucsa.282070	Cucurbita pepo (Zucchini)	cgycpeB0741
Cucsa.282070	Cucurbita pepo (Zucchini)	cgycpeB0743