Lsi06G012130 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G012130
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMethionyl-tRNA synthetase
Locationchr06 : 22505549 .. 22505755 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCTCGCATGCGTATGGGAAGAGAAAGAGCGAGAACTTGGACGGCAACAAGCGCCAGGAACTTGCCCTTTCTGTCAAGGCAAAGTGTACGCCATTGATGTCGAAAGGCGATGGAAGCTCTGTTTTCTTCCTCTCTGCCTGAAGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTTGAATTGTGCCACTGGTAG

mRNA sequence

ATGTGGCTCGCATGCGTATGGGAAGAGAAAGAGCGAGAACTTGGACGGCAACAAGCGCCAGGAACTTGCCCTTTCTGTCAAGGCAAAGTGTACGCCATTGATGTCGAAAGGCGATGGAAGCTCTGTTTTCTTCCTCTCTGCCTGAAGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTTGAATTGTGCCACTGGTAG

Coding sequence (CDS)

ATGTGGCTCGCATGCGTATGGGAAGAGAAAGAGCGAGAACTTGGACGGCAACAAGCGCCAGGAACTTGCCCTTTCTGTCAAGGCAAAGTGTACGCCATTGATGTCGAAAGGCGATGGAAGCTCTGTTTTCTTCCTCTCTGCCTGAAGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTTGAATTGTGCCACTGGTAG

Protein sequence

MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCSRRLELCHW
Homology
[Close]
BLAST of Lsi06G012130 vs. TrEMBL
Match: A0A0A0LUS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426700 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 6.2e-35
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKE+ELGRQQAPGTCPFCQGKVYAIDVER+WKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]
BLAST of Lsi06G012130 vs. TrEMBL
Match: B9THU3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1968200 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.6e-22
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L  + EE+ERELGRQQAPG+CP+C GKV A+DVER+W  CFLP+C KIKRK+ C+LC+
Sbjct: 1  MCLVFLCEEEERELGRQQAPGSCPYCGGKVEAMDVERKWSFCFLPICYKIKRKFFCSLCA 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]
BLAST of Lsi06G012130 vs. TrEMBL
Match: A0A151RW15_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_031643 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.6e-22
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MW   +W+E+E+ELGRQQAPGTCP+C GKV A+DVE +W+LCFLP+C K+KRK+ CT CS
Sbjct: 1  MWFLYLWDEEEKELGRQQAPGTCPYCAGKVEAMDVEIQWRLCFLPMCFKLKRKFFCTNCS 60

Query: 61 RRLEL 66
          RRLEL
Sbjct: 61 RRLEL 65

[Close]
BLAST of Lsi06G012130 vs. TrEMBL
Match: A0A067J9B5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06884 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.9e-22
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M  A + +E+E+ELGRQQAPG+CP+C GKV A+DVE +W  CFLP+C KIKRKY CTLC+
Sbjct: 1  MCFALLCDEEEKELGRQQAPGSCPYCGGKVQAMDVETKWSFCFLPICYKIKRKYFCTLCA 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]
BLAST of Lsi06G012130 vs. TrEMBL
Match: A0A0B2QSL0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_032280 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-21
Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 1   MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
           MW   V++E+++ELGRQQAPG+CP+CQGKV A+DVE +W+LCFLP+C KIKRKY CT C+
Sbjct: 51  MWFMHVFDEEKKELGRQQAPGSCPYCQGKVEAMDVEIQWRLCFLPMCFKIKRKYFCTSCA 110

Query: 61  RRLEL 66
           RRLEL
Sbjct: 111 RRLEL 115

[Close]
BLAST of Lsi06G012130 vs. TAIR10
Match: AT5G57123.1 (AT5G57123.1 unknown protein)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-22
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L C+ +E+E ELGRQQAPG+CP+C GKV  +DVER+W  CF+PLC KIKRKY C+ C 
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 61 RRLELCH 68
          RRL L H
Sbjct: 61 RRLVLYH 67

[Close]
BLAST of Lsi06G012130 vs. TAIR10
Match: AT4G29905.1 (AT4G29905.1 unknown protein)

HSP 1 Score: 92.8 bits (229), Expect = 8.6e-20
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L  V+ E++ ELGRQQAPG CP+C GKV A+D+E +W  CFLPLC K+KRKY C+ C 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 61 RRLEL 66
          R L L
Sbjct: 61 RHLVL 65

[Close]
BLAST of Lsi06G012130 vs. TAIR10
Match: AT5G10695.1 (AT5G10695.1 unknown protein)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-14
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L  V ++ ER +GR  APG CP+C G V  +DV  +W+ CF+PL  K KR++LC+ C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 RRL 64
          +RL
Sbjct: 61 KRL 63

[Close]
BLAST of Lsi06G012130 vs. NCBI nr
Match: gi|449457203|ref|XP_004146338.1| (PREDICTED: uncharacterized protein LOC101203895 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 9.0e-35
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKE+ELGRQQAPGTCPFCQGKVYAIDVER+WKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]
BLAST of Lsi06G012130 vs. NCBI nr
Match: gi|657998311|ref|XP_008391556.1| (PREDICTED: uncharacterized protein LOC103453765 [Malus domestica])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACV +E+E+ELGRQQAPG+CP C+GKV A+DVE + KLCFLPLC KIKRKY CTLCS
Sbjct: 1  MWLACVCDEEEKELGRQQAPGSCPHCRGKVQAVDVEAQRKLCFLPLCFKIKRKYFCTLCS 60

Query: 61 RRLEL 66
          RRL L
Sbjct: 61 RRLVL 65

[Close]
BLAST of Lsi06G012130 vs. NCBI nr
Match: gi|1000936016|ref|XP_015584313.1| (PREDICTED: uncharacterized protein LOC8263837 [Ricinus communis])

HSP 1 Score: 111.3 bits (277), Expect = 6.7e-22
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L  + EE+ERELGRQQAPG+CP+C GKV A+DVER+W  CFLP+C KIKRK+ C+LC+
Sbjct: 1  MCLVFLCEEEERELGRQQAPGSCPYCGGKVEAMDVERKWSFCFLPICYKIKRKFFCSLCA 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]
BLAST of Lsi06G012130 vs. NCBI nr
Match: gi|1012335409|gb|KYP46739.1| (hypothetical protein KK1_031643 [Cajanus cajan])

HSP 1 Score: 111.3 bits (277), Expect = 6.7e-22
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MW   +W+E+E+ELGRQQAPGTCP+C GKV A+DVE +W+LCFLP+C K+KRK+ CT CS
Sbjct: 1  MWFLYLWDEEEKELGRQQAPGTCPYCAGKVEAMDVEIQWRLCFLPMCFKLKRKFFCTNCS 60

Query: 61 RRLEL 66
          RRLEL
Sbjct: 61 RRLEL 65

[Close]
BLAST of Lsi06G012130 vs. NCBI nr
Match: gi|802795960|ref|XP_012092640.1| (PREDICTED: uncharacterized protein LOC105650361 [Jatropha curcas])

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M  A + +E+E+ELGRQQAPG+CP+C GKV A+DVE +W  CFLP+C KIKRKY CTLC+
Sbjct: 1  MCFALLCDEEEKELGRQQAPGSCPYCGGKVQAMDVETKWSFCFLPICYKIKRKYFCTLCA 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

The following BLAST results are available for this feature:
BLAST of Lsi06G012130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G012130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUS9_CUCSA6.2e-3597.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426700 PE=4 SV=1[more]
B9THU3_RICCO4.6e-2270.15Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1968200 PE=4 SV=1[more]
A0A151RW15_CAJCA4.6e-2269.23Uncharacterized protein OS=Cajanus cajan GN=KK1_031643 PE=4 SV=1[more]
A0A067J9B5_JATCU7.9e-2268.66Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06884 PE=4 SV=1[more]
A0A0B2QSL0_GLYSO2.3e-2169.23Uncharacterized protein OS=Glycine soja GN=glysoja_032280 PE=4 SV=1[more]
BLAST of Lsi06G012130 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G57123.11.9e-2264.18 unknown protein[more]
AT4G29905.18.6e-2060.00 unknown protein[more]
AT5G10695.14.2e-1447.62 unknown protein[more]
BLAST of Lsi06G012130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457203|ref|XP_004146338.1|9.0e-3597.06PREDICTED: uncharacterized protein LOC101203895 [Cucumis sativus][more]
gi|657998311|ref|XP_008391556.1|1.3e-2276.92PREDICTED: uncharacterized protein LOC103453765 [Malus domestica][more]
gi|1000936016|ref|XP_015584313.1|6.7e-2270.15PREDICTED: uncharacterized protein LOC8263837 [Ricinus communis][more]
gi|1012335409|gb|KYP46739.1|6.7e-2269.23hypothetical protein KK1_031643 [Cajanus cajan][more]
gi|802795960|ref|XP_012092640.1|1.1e-2168.66PREDICTED: uncharacterized protein LOC105650361 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G012130.1Lsi06G012130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33320FAMILY NOT NAMEDcoord: 1..65
score: 1.0
NoneNo IPR availablePANTHERPTHR33320:SF7SUBFAMILY NOT NAMEDcoord: 1..65
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G012130CSPI01G20640Wild cucumber (PI 183967)cpilsiB060
Lsi06G012130Cucsa.088950Cucumber (Gy14) v1cgylsiB103
Lsi06G012130Cucsa.282070Cucumber (Gy14) v1cgylsiB457
Lsi06G012130CmaCh05G007230Cucurbita maxima (Rimu)cmalsiB733
Lsi06G012130CmoCh11G003580Cucurbita moschata (Rifu)cmolsiB128
Lsi06G012130CmoCh05G007610Cucurbita moschata (Rifu)cmolsiB722
Lsi06G012130Cla022752Watermelon (97103) v1lsiwmB413
Lsi06G012130Cla018863Watermelon (97103) v1lsiwmB414
Lsi06G012130MELO3C017419Melon (DHL92) v3.5.1lsimeB397
Lsi06G012130MELO3C003964Melon (DHL92) v3.5.1lsimeB419
Lsi06G012130ClCG06G013690Watermelon (Charleston Gray)lsiwcgB372
Lsi06G012130ClCG11G011590Watermelon (Charleston Gray)lsiwcgB356
Lsi06G012130MELO3C003964.2Melon (DHL92) v3.6.1lsimedB441
Lsi06G012130MELO3C017419.2Melon (DHL92) v3.6.1lsimedB419
Lsi06G012130Cla97C06G123150Watermelon (97103) v2lsiwmbB374
Lsi06G012130Bhi02G000533Wax gourdlsiwgoB524
Lsi06G012130Carg15217Silver-seed gourdcarlsiB726
Lsi06G012130Carg09059Silver-seed gourdcarlsiB540
Lsi06G012130CsaV3_1G031970Cucumber (Chinese Long) v3cuclsiB069
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G012130Cucurbita maxima (Rimu)cmalsiB075
Lsi06G012130Cucurbita maxima (Rimu)cmalsiB143
Lsi06G012130Cucurbita maxima (Rimu)cmalsiB180
Lsi06G012130Cucurbita moschata (Rifu)cmolsiB061
Lsi06G012130Cucurbita moschata (Rifu)cmolsiB170
Lsi06G012130Cucurbita pepo (Zucchini)cpelsiB301
Lsi06G012130Cucurbita pepo (Zucchini)cpelsiB556
Lsi06G012130Cucurbita pepo (Zucchini)cpelsiB681
Lsi06G012130Wild cucumber (PI 183967)cpilsiB131
Lsi06G012130Cucumber (Chinese Long) v2culsiB059
Lsi06G012130Cucumber (Chinese Long) v2culsiB132
Lsi06G012130Cucumber (Gy14) v2cgyblsiB056
Lsi06G012130Cucumber (Gy14) v2cgyblsiB121
Lsi06G012130Cucumber (Chinese Long) v3cuclsiB143
Lsi06G012130Watermelon (97103) v2lsiwmbB360
Lsi06G012130Bottle gourd (USVL1VR-Ls)lsilsiB058