Carg15217 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15217
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Methionyl-tRNA synthetase
Location	Cucurbita_argyrosperma_scaffold_073 : 392409 .. 392833 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCTCGCATGTGTATGGGATGAGAAAGAGAAAGAGCTCGGTAGACAACAAGCGCCAGGAACGTGTCCTTTCTGTCGAGGCAAAGTGCACGCCATTGATGTCGAAAGGCGATGGAAGCTCTGTTTTCTTCCTCTCTGCCTCAAGATCAAGAGGAAGTATCTTTGTACTCTCTGTTCTCGCCGTCTCGAATTGTGCCACTGGTAGTAATTTAAGAAAGAAAAAGAAATTAGGTCTCGGTTTTCATCGAACTATTGATGGATCTAATTTGAACCGCTACTCGTAGTTCGTGTTCCCGTTCTTCCGTGAAGTGTTTGATTGAATTTTTGGAGAAACGGATGAGGATCAGGATTTGGATCTGACTCGATTAGATGCATCTAATCTTGTTGTTTTTCTTTTTGTACAGCTTCGAAAACTGTAGATAG

mRNA sequence

ATGTGGCTCGCATGTGTATGGGATGAGAAAGAGAAAGAGCTCGGTAGACAACAAGCGCCAGGAACGTGTCCTTTCTGTCGAGGCAAAGTGCACGCCATTGATGTCGAAAGGCGATGGAAGCTCTGTTTTCTTCCTCTCTGCCTCAAGATCAAGAGGAAGTATCTTTGTACTCTCTGTTCTCGCCGTCTCGAATTGTGCCACTGCTTCGAAAACTGTAGATAG

Coding sequence (CDS)

ATGTGGCTCGCATGTGTATGGGATGAGAAAGAGAAAGAGCTCGGTAGACAACAAGCGCCAGGAACGTGTCCTTTCTGTCGAGGCAAAGTGCACGCCATTGATGTCGAAAGGCGATGGAAGCTCTGTTTTCTTCCTCTCTGCCTCAAGATCAAGAGGAAGTATCTTTGTACTCTCTGTTCTCGCCGTCTCGAATTGTGCCACTGCTTCGAAAACTGTAGATAG

Protein sequence

MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCSRRLELCHCFENCR

Homology

[Close]

BLAST of Carg15217 vs. NCBI nr
Match: XP_022921752.1 (uncharacterized protein LOC111429909 [Cucurbita moschata])

HSP 1 Score: 154.1 bits (388), Expect = 1.9e-34
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]

BLAST of Carg15217 vs. NCBI nr
Match: XP_023516430.1 (uncharacterized protein LOC111780298 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.9 bits (385), Expect = 4.2e-34
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWK+CFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKVCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]

BLAST of Carg15217 vs. NCBI nr
Match: XP_022987352.1 (uncharacterized protein LOC111484931 [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWDEKEKELGRQQAPGTCPFCRGKV+AIDVERRWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVNAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]

BLAST of Carg15217 vs. NCBI nr
Match: XP_022135123.1 (uncharacterized protein LOC111007177 [Momordica charantia])

HSP 1 Score: 148.7 bits (374), Expect = 7.9e-33
Identity = 64/67 (95.52%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVW+EKEKELGRQQAPGTCPFC+GKV+AIDVERRWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]

BLAST of Carg15217 vs. NCBI nr
Match: XP_004146338.1 (PREDICTED: uncharacterized protein LOC101203895 [Cucumis sativus] >XP_008453548.1 PREDICTED: uncharacterized protein LOC103494230 [Cucumis melo] >KGN65493.1 hypothetical protein Csa_1G426700 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 6.7e-32
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVW+EKE+ELGRQQAPGTCPFC+GKV+AIDVER+WKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]

BLAST of Carg15217 vs. TAIR10
Match: AT5G57123.1 (unknown protein)

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-23
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L C+ DE+E ELGRQQAPG+CP+C GKV  +DVER+W  CF+PLC KIKRKY C+ C 
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 61 RRLELCH 68
          RRL L H
Sbjct: 61 RRLVLYH 67

[Close]

BLAST of Carg15217 vs. TAIR10
Match: AT4G29905.1 (unknown protein)

HSP 1 Score: 93.2 bits (230), Expect = 7.1e-20
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L  V+ E++ ELGRQQAPG CP+C GKV A+D+E +W  CFLPLC K+KRKY C+ C 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 61 RRLEL 66
          R L L
Sbjct: 61 RHLVL 65

[Close]

BLAST of Carg15217 vs. TAIR10
Match: AT5G10695.1 (unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-14
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L  V D+ E+ +GR  APG CP+C G V  +DV  +W+ CF+PL  K KR++LC+ C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 RRL 64
          +RL
Sbjct: 61 KRL 63

[Close]

BLAST of Carg15217 vs. TrEMBL
Match: tr|A0A1S3BWI2|A0A1S3BWI2_CUCME (uncharacterized protein LOC103494230 OS=Cucumis melo OX=3656 GN=LOC103494230 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-32
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVW+EKE+ELGRQQAPGTCPFC+GKV+AIDVER+WKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]

BLAST of Carg15217 vs. TrEMBL
Match: tr|A0A0A0LUS9|A0A0A0LUS9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426700 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-32
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVW+EKE+ELGRQQAPGTCPFC+GKV+AIDVER+WKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

[Close]

BLAST of Carg15217 vs. TrEMBL
Match: tr|A0A151RW15|A0A151RW15_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_031643 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.4e-23
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MW   +WDE+EKELGRQQAPGTCP+C GKV A+DVE +W+LCFLP+C K+KRK+ CT CS
Sbjct: 1  MWFLYLWDEEEKELGRQQAPGTCPYCAGKVEAMDVEIQWRLCFLPMCFKLKRKFFCTNCS 60

Query: 61 RRLEL 66
          RRLEL
Sbjct: 61 RRLEL 65

[Close]

BLAST of Carg15217 vs. TrEMBL
Match: tr|A0A2I4DNF1|A0A2I4DNF1_9ROSI (uncharacterized protein LOC108981883 OS=Juglans regia OX=51240 GN=LOC108981883 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MW   V DE+++ELG QQAPG+CPFC GKV AID+ER+WK CFLP+C KIKRKY CTLCS
Sbjct: 1  MWFLFVCDEEDRELGTQQAPGSCPFCGGKVQAIDIERQWKFCFLPICFKIKRKYFCTLCS 60

Query: 61 RRLEL 66
          RRLEL
Sbjct: 61 RRLEL 65

[Close]

BLAST of Carg15217 vs. TrEMBL
Match: tr|A0A067J9B5|A0A067J9B5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06884 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M  A + DE+EKELGRQQAPG+CP+C GKV A+DVE +W  CFLP+C KIKRKY CTLC+
Sbjct: 1  MCFALLCDEEEKELGRQQAPGSCPYCGGKVQAMDVETKWSFCFLPICYKIKRKYFCTLCA 60

Query: 61 RRLELCH 68
          RRLELCH
Sbjct: 61 RRLELCH 67

The following BLAST results are available for this feature:

BLAST of Carg15217 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921752.1	1.9e-34	100.00	uncharacterized protein LOC111429909 [Cucurbita moschata]	[more]
XP_023516430.1	4.2e-34	98.51	uncharacterized protein LOC111780298 [Cucurbita pepo subsp. pepo]	[more]
XP_022987352.1	1.2e-33	98.51	uncharacterized protein LOC111484931 [Cucurbita maxima]	[more]
XP_022135123.1	7.9e-33	95.52	uncharacterized protein LOC111007177 [Momordica charantia]	[more]
XP_004146338.1	6.7e-32	92.54	PREDICTED: uncharacterized protein LOC101203895 [Cucumis sativus] >XP_008453548....	[more]

BLAST of Carg15217 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57123.1	4.0e-23	65.67	unknown protein	[more]
AT4G29905.1	7.1e-20	60.00	unknown protein	[more]
AT5G10695.1	2.0e-14	47.62	unknown protein	[more]

BLAST of Carg15217 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15217 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BWI2\|A0A1S3BWI2_CUCME	4.4e-32	92.54	uncharacterized protein LOC103494230 OS=Cucumis melo OX=3656 GN=LOC103494230 PE=...	[more]
tr\|A0A0A0LUS9\|A0A0A0LUS9_CUCSA	4.4e-32	92.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426700 PE=4 SV=1	[more]
tr\|A0A151RW15\|A0A151RW15_CAJCA	6.4e-23	72.31	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_031643 PE=4 SV=1	[more]
tr\|A0A2I4DNF1\|A0A2I4DNF1_9ROSI	1.1e-22	73.85	uncharacterized protein LOC108981883 OS=Juglans regia OX=51240 GN=LOC108981883 P...	[more]
tr\|A0A067J9B5\|A0A067J9B5_JATCU	1.4e-22	71.64	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06884 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15217-RA	Carg15217-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	FAMILY NOT NAMED	coord: 1..65
None	No IPR available	PANTHER	PTHR33320:SF7	SUBFAMILY NOT NAMED	coord: 1..65

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15217	Cla022752	Watermelon (97103) v1	carwmB0787
Carg15217	Cla018863	Watermelon (97103) v1	carwmB0789
Carg15217	MELO3C003964	Melon (DHL92) v3.5.1	carmeB0786
Carg15217	MELO3C017419	Melon (DHL92) v3.5.1	carmeB0785
Carg15217	ClCG11G011590	Watermelon (Charleston Gray)	carwcgB0761
Carg15217	ClCG06G013690	Watermelon (Charleston Gray)	carwcgB0764
Carg15217	CSPI01G20640	Wild cucumber (PI 183967)	carcpiB0822
Carg15217	Cucsa.088950	Cucumber (Gy14) v1	carcgyB0894
Carg15217	Cucsa.282070	Cucumber (Gy14) v1	carcgyB0900
Carg15217	CmaCh05G007230	Cucurbita maxima (Rimu)	carcmaB1096
Carg15217	CmoCh05G007610	Cucurbita moschata (Rifu)	carcmoB1066
Carg15217	CmoCh11G003580	Cucurbita moschata (Rifu)	carcmoB1064
Carg15217	Lsi06G012130	Bottle gourd (USVL1VR-Ls)	carlsiB726
Carg15217	MELO3C003964.2	Melon (DHL92) v3.6.1	carmedB0798
Carg15217	MELO3C017419.2	Melon (DHL92) v3.6.1	carmedB0797
Carg15217	CsaV3_1G031970	Cucumber (Chinese Long) v3	carcucB0826
Carg15217	Cla97C06G123150	Watermelon (97103) v2	carwmbB0827
Carg15217	Bhi02G000533	Wax gourd	carwgoB0925

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15217	Carg09059	Silver-seed gourd	carcarB537

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15217	Cucumber (Gy14) v2	carcgybB0779
Carg15217	Cucurbita maxima (Rimu)	carcmaB1091
Carg15217	Cucurbita maxima (Rimu)	carcmaB1092
Carg15217	Cucurbita moschata (Rifu)	carcmoB1063
Carg15217	Cucurbita pepo (Zucchini)	carcpeB1103
Carg15217	Cucurbita pepo (Zucchini)	carcpeB1106
Carg15217	Cucumber (Chinese Long) v2	carcuB0803