CmoCh05G007610 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G007610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Methionyl-tRNA synthetase
Location	Cmo_Chr05 : 4265515 .. 4268670 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTCTGCAAGGAGGACAAAGAGCTGGGTCGGCGGCAGGCCATGGGGAGGTGCCCATTGTGCGGCGGCAAAGTTGAGGCAGTGGACGTGGAGAGGAAATGGAGGCTCTGTTTAGCTCCACTCTGTTTCAAAATCAAGAGGAAATATTACTGTGTTATGTGTGGTCGTCGTTTGGAATTGTATTATTAATCTTCTTCTTTTTCTTGGTTTCTTTTGTGTTCTTAGATTGAATGAGTTATATGTGACAAAGGGTTTCTGGGTTTCTTTTTCTTTTTGTTGGTGTAAATGGGTTTATGGAGTTTGATTGCTTATGAATGTTTTCAGAGAGGGAGGGGAGAGATTGTTAATGGGTTTTTGAATCATTAAATTTTTAACCCATTTTTAAAAATCTAGAACCAAAATCAAAGAGTTTAGGTTTAGAAGAGTTAATATCGTATCATTGCGAGGATTGTTGTTTTTAATTTGGTGTCAGAGTTATTATTTCTGTGGGATTTATAAGAGTCAAGTTCCGATTAAGTAGGGATTGTTCATAGGTTTAAGAGAATTAAAGAGGTCTCGAAGGAGATTTTATGGTGTAGTTCAAAAAGAGGATCGTTGAGGATTATTAAGAGCCTGAGTAGTCTCAGGTTAGCTAATGAAGGATGAACGTTATCTTTATTCAAATAAGGTCAATTAAATTCATGAAAGCTATTTTATCTATTTCTTAAATGAGCACTCAGACGGTCATTTTTTCATTTTGATCTCTTACTGTATTTATGACTTAAATTAGAAAAAAAAATATTATAATTATGTGTACGTGATCTTACCATTCGAACCTAAAATTAAATTCTTGGATAAGAGATGGAAAAGTTAATGGATATTTTTTATATCGAATGTGATAAATGATTTTCTTTTTCTTTGGTAAGAATTTCAATTGAGTTATACTCATATTAACATAAAAATAATTAAAACGGCAGTGACGTGAGTTGAAATATTCGAATCTACCCAATAAATATTGAACACAAATTTGAAAAATTGGTTCGATTTATCTTCTGCATTCAATGATATAAATTTTTAATTATTTTATACCGACAATGTAAGTGATGTTGAAGATAAGTATATTTATATATATTTATTTATTGTGGTAGTGATGTATTTCACATGGTATTGATATGGTCTTTGTCACATCTCGAGTTATATATTATTCTTTTCTGTAAGTGAATATTATTTTATTATTCGTTTTTTGTTTCCTTATATGTCATTCCTAACAAAACGTCCATTATTATAATTCTTTTCTAAAATAGAATTATTGGGAAGCTTTTCCTAACTTTTCTTCTACGAAAATGAAAGCACTTTAAGTTTGTTGCGTTACGGTCAATCTCAAATACAAAATTCAAATTTTTGGGTTACTTACTTTATGTTATGTATTTTCTTATAAACTCAATTTCATTAATTCAATATTTATGTGAGAGATTTTCTTATAAACTCAATTTCATTAATTCAATATTTATGTGAGAGGACGAATATTCTTTGTAGTTTCACGGTTCGTATCAAAGAGAAATAAATATTTAACCATTATTAAGATACAAAATAATATTTTGAAATTTAAGAACGAACAGTTGAATGTTCTATAAAAATTTAGAGACTTAATTATCTCATGTCCAGAATACAAAATTTGGATTCGGTATCTGATAGCTCCGGCATCTTTGCGACATCGTCACATCACTTTTAGACATAAGAGTGGAGACTATCCTTGCAGAAAATTCCCAGGAAGTTATTCAACATATAATTATTCAAAAGAAAGTAAACAGGTTTATCTTTAGAGTTGTTATGATTAAACCACAAAAAAGGGATATACATCTTGTTGATACAAATAGTAACTTTCAATTTTTTTAAGTCTTTTTTTATCATTTTTTTTTCAAGATCACTCTTATTTGGATGTGATTTTGATTCATTCATGTATCAACATTTATTCACGTATCACATTTTATAACATAAGAATTTCAATATTGTAAATGGCTGTATTTGGATATGTTCATCCGTGCTTTTAAAATTGTTTAAATCAATTTTATTATATTCAAAATCACTCTGAACCGTGAAAGTCACATCTGCCACCTTGCAAGCCAATGAAGGCTAGCTTTTCAAAGAGATACTTCAGCGGGTCCATCCTTGCAATCAGCATGGTCATATAGTTCAAGATGTAGCGGTGTAGGTGTTGCGAGGCTCATGGTTGAGCACAACCGCTTTTTTCTAGAACCGTATACCTTGTCTCATAATCAGTGAACCTTTTGCAGATCTCGTATATTGCTCTTTCTTTCCTACCAGTTTTATCGTGGTGACCAAGGATAGACACAACTCATAGATGCTTTCATTACTTACCGATGCATCATGAGAGGTCGACCGAGCGTTGGCGGTACCTTTAAATCAATTTTATTATATTCAAATTCACTTTAAATAGATATTTAGTCATTCAAAATAATTCAATATTTAATTTTACATTTTCAAATGCCATTTTTCATACTATTAAAATAAATTTTTAATGGTGTATCATTTTAAGCAAAAGTGACTTTAATTTGTATTGGAGAAAGAGAAATGAAACACTTTTATAAACGTGTGGAAACTTCTCCCTAATAGACATATTTTAAAATCGTGAGTCTGACAGCGATAAGTAACAGGCCAAAGCGGATAATATTTACTTGCTGTGGGCTTAGGCTATTACAAATAATATCAAAGTCAGTTACGAACGATGCGAGGCAATAGTCGAAGTAGGGCTAAACTCTCTCCATCGCAGATGCATTTTAAAATCGTAAGACTATCGATGATACATAACAGATGAAAGTAGACAAAACAATGTTCGTGATCTCCATTTAATGAGAACAATGGGGTTGAACAATTCAATTCCAAGAGCTAACTTATCCGAACATTAAATAACAAGGCTGCTTCCCCCATATGATCCCGCCGTCGTTGAGCTGGTCCGGCTTGGATTATTTTTGTGGAGATATTGAATGAGTTTGGTTTAATTTGATTTTGAGAAGCATTGATAAAGCAGCGATGGGACCGCAGTGGCCTGACGTCCCTCATCGTTTCAGCTTCAGACTGTCATGTGAGATCCGTCAGAAACACAAAAGCATGGTGGTTGTTGATTTCATGCTACTTAATGCCATATATGGATAA

mRNA sequence

ATGTTGTTCTGCAAGGAGGACAAAGAGCTGGGTCGGCGGCAGGCCATGGGGAGGTGCCCATTGTGCGGCGGCAAAGTTGAGGCAGTGGACGTGGAGAGGAAATGGAGGCTCTGTTTAGCTCCACTCTGTTTCAAAATCAAGAGGAAATATTACTGTGTTATGTGTGCGATGGGACCGCAGTGGCCTGACGTCCCTCATCGTTTCAGCTTCAGACTGTCATGTGAGATCCGTCAGAAACACAAAAGCATGGTGGTTGTTGATTTCATGCTACTTAATGCCATATATGGATAA

Coding sequence (CDS)

ATGTTGTTCTGCAAGGAGGACAAAGAGCTGGGTCGGCGGCAGGCCATGGGGAGGTGCCCATTGTGCGGCGGCAAAGTTGAGGCAGTGGACGTGGAGAGGAAATGGAGGCTCTGTTTAGCTCCACTCTGTTTCAAAATCAAGAGGAAATATTACTGTGTTATGTGTGCGATGGGACCGCAGTGGCCTGACGTCCCTCATCGTTTCAGCTTCAGACTGTCATGTGAGATCCGTCAGAAACACAAAAGCATGGTGGTTGTTGATTTCATGCTACTTAATGCCATATATGGATAA

Homology

[Close]

BLAST of CmoCh05G007610 vs. TrEMBL
Match: M5XGV4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014734mg PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.5e-15
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 5  KEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCA 57
          +E+KELGR+QA G CP CGGKV+AVDVE +W+ C  P+CFKIKRKY+C +CA
Sbjct: 9  EEEKELGRQQAPGSCPHCGGKVQAVDVEAQWKFCFLPMCFKIKRKYFCTLCA 60

[Close]

BLAST of CmoCh05G007610 vs. TrEMBL
Match: A0A067J9B5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06884 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-15
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCA 57
          +L  +E+KELGR+QA G CP CGGKV+A+DVE KW  C  P+C+KIKRKY+C +CA
Sbjct: 5  LLCDEEEKELGRQQAPGSCPYCGGKVQAMDVETKWSFCFLPICYKIKRKYFCTLCA 60

[Close]

BLAST of CmoCh05G007610 vs. TrEMBL
Match: A0A0B2QSL0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_032280 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.8e-15
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 2   LFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCA 57
           +F +E KELGR+QA G CP C GKVEA+DVE +WRLC  P+CFKIKRKY+C  CA
Sbjct: 56  VFDEEKKELGRQQAPGSCPYCQGKVEAMDVEIQWRLCFLPMCFKIKRKYFCTSCA 110

[Close]

BLAST of CmoCh05G007610 vs. TrEMBL
Match: I1MH47_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G167300 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.8e-15
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 2   LFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCA 57
           +F +E KELGR+QA G CP C GKVEA+DVE +WRLC  P+CFKIKRKY+C  CA
Sbjct: 56  VFDEEKKELGRQQAPGSCPYCQGKVEAMDVEIQWRLCFLPMCFKIKRKYFCTSCA 110

[Close]

BLAST of CmoCh05G007610 vs. TrEMBL
Match: B9THU3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1968200 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 5  KEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCA 57
          +E++ELGR+QA G CP CGGKVEA+DVERKW  C  P+C+KIKRK++C +CA
Sbjct: 9  EEERELGRQQAPGSCPYCGGKVEAMDVERKWSFCFLPICYKIKRKFFCSLCA 60

[Close]

BLAST of CmoCh05G007610 vs. TAIR10
Match: AT5G57123.1 (AT5G57123.1 unknown protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-16
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 5  KEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMC 56
          +E+ ELGR+QA G CP CGGKV+ +DVERKW  C  PLCFKIKRKY C  C
Sbjct: 9  EEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSC 59

[Close]

BLAST of CmoCh05G007610 vs. TAIR10
Match: AT4G29905.1 (AT4G29905.1 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-16
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMC 56
          +++ +E  ELGR+QA G CP CGGKV AVD+E KW  C  PLCFK+KRKY C  C
Sbjct: 5  VVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSC 59

[Close]

BLAST of CmoCh05G007610 vs. TAIR10
Match: AT5G10695.1 (AT5G10695.1 unknown protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-09
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1


Query: 5  KEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMC 56
          ++++ +GR  A G CP CGG V+ VDV  +WR C  PL  K KR++ C  C
Sbjct: 9  QDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTC 59

[Close]

BLAST of CmoCh05G007610 vs. NCBI nr
Match: gi|659069645|ref|XP_008451097.1| (PREDICTED: uncharacterized protein LOC103492473 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 1


Query: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMC 56
          MLFCKE+KELGRRQA G CP CGGKV+AVDVERKWRLC  PLCFKIKRKYYC++C
Sbjct: 1  MLFCKEEKELGRRQATGTCPSCGGKVQAVDVERKWRLCFVPLCFKIKRKYYCLIC 55

[Close]

BLAST of CmoCh05G007610 vs. NCBI nr
Match: gi|778667626|ref|XP_011648964.1| (PREDICTED: uncharacterized protein LOC105434563 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-20
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMC 56
          MLFCKE+KELGR+QA G CP CGGKV+AVDVER+WR C  PLCFKIKRKYYC++C
Sbjct: 1  MLFCKEEKELGRQQATGTCPSCGGKVQAVDVERRWRFCFVPLCFKIKRKYYCLIC 55

[Close]

BLAST of CmoCh05G007610 vs. NCBI nr
Match: gi|645234557|ref|XP_008223864.1| (PREDICTED: uncharacterized protein LOC103323638 [Prunus mume])

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-15
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 5  KEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCA 57
          +E+KELGR+QA G CP CGGKV+AVDVE +W+LC  P+CFKIKRKY+C +CA
Sbjct: 9  EEEKELGRQQAPGSCPHCGGKVQAVDVEAQWKLCFLPMCFKIKRKYFCTLCA 60

[Close]

BLAST of CmoCh05G007610 vs. NCBI nr
Match: gi|1009105882|ref|XP_015896304.1| (PREDICTED: uncharacterized protein LOC107430004 [Ziziphus jujuba])

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-15
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 5  KEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCA 57
          +E+KELGR+QA G CP CGGKV+A+DVE +W+ C  PLCFKIKRKY+C +CA
Sbjct: 9  EEEKELGRQQAPGSCPHCGGKVQAIDVETQWKFCFLPLCFKIKRKYFCTLCA 60

[Close]

BLAST of CmoCh05G007610 vs. NCBI nr
Match: gi|596218279|ref|XP_007223980.1| (hypothetical protein PRUPE_ppa014734mg [Prunus persica])

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-15
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 5  KEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCA 57
          +E+KELGR+QA G CP CGGKV+AVDVE +W+ C  P+CFKIKRKY+C +CA
Sbjct: 9  EEEKELGRQQAPGSCPHCGGKVQAVDVEAQWKFCFLPMCFKIKRKYFCTLCA 60

The following BLAST results are available for this feature:

BLAST of CmoCh05G007610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G007610 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XGV4_PRUPE	4.5e-15	67.31	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014734mg PE=4 SV=1	[more]
A0A067J9B5_JATCU	5.9e-15	62.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06884 PE=4 SV=1	[more]
A0A0B2QSL0_GLYSO	7.8e-15	67.27	Uncharacterized protein OS=Glycine soja GN=glysoja_032280 PE=4 SV=1	[more]
I1MH47_SOYBN	7.8e-15	67.27	Uncharacterized protein OS=Glycine max GN=GLYMA_15G167300 PE=4 SV=1	[more]
B9THU3_RICCO	1.0e-14	65.38	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1968200 PE=4 SV=1	[more]

BLAST of CmoCh05G007610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57123.1	1.6e-16	66.67	unknown protein	[more]
AT4G29905.1	6.3e-16	60.00	unknown protein	[more]
AT5G10695.1	2.0e-09	45.10	unknown protein	[more]

BLAST of CmoCh05G007610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069645\|ref\|XP_008451097.1\|	3.6e-21	83.64	PREDICTED: uncharacterized protein LOC103492473 [Cucumis melo]	[more]
gi\|778667626\|ref\|XP_011648964.1\|	6.7e-20	78.18	PREDICTED: uncharacterized protein LOC105434563 [Cucumis sativus]	[more]
gi\|645234557\|ref\|XP_008223864.1\|	2.2e-15	69.23	PREDICTED: uncharacterized protein LOC103323638 [Prunus mume]	[more]
gi\|1009105882\|ref\|XP_015896304.1\|	5.0e-15	67.31	PREDICTED: uncharacterized protein LOC107430004 [Ziziphus jujuba]	[more]
gi\|596218279\|ref\|XP_007223980.1\|	6.5e-15	67.31	hypothetical protein PRUPE_ppa014734mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G007610.1	CmoCh05G007610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	FAMILY NOT NAMED	coord: 6..56 score: 9.7
None	No IPR available	PANTHER	PTHR33320:SF7	SUBFAMILY NOT NAMED	coord: 6..56 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G007610	CmaCh05G007230	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G007610	Cla018863	Watermelon (97103) v1	cmowmB766
CmoCh05G007610	Cla022752	Watermelon (97103) v1	cmowmB764
CmoCh05G007610	MELO3C017419	Melon (DHL92) v3.5.1	cmomeB711
CmoCh05G007610	ClCG11G011590	Watermelon (Charleston Gray)	cmowcgB696
CmoCh05G007610	ClCG06G013690	Watermelon (Charleston Gray)	cmowcgB709
CmoCh05G007610	CSPI01G20640	Wild cucumber (PI 183967)	cmocpiB779
CmoCh05G007610	Lsi06G012130	Bottle gourd (USVL1VR-Ls)	cmolsiB722
CmoCh05G007610	MELO3C017419.2	Melon (DHL92) v3.6.1	cmomedB807
CmoCh05G007610	CsaV3_1G031970	Cucumber (Chinese Long) v3	cmocucB0912
CmoCh05G007610	Cla97C06G123150	Watermelon (97103) v2	cmowmbB795
CmoCh05G007610	Bhi02G000533	Wax gourd	cmowgoB0969
CmoCh05G007610	Carg09059	Silver-seed gourd	carcmoB0815
CmoCh05G007610	Carg15217	Silver-seed gourd	carcmoB1066

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G007610	CmoCh11G003580	Cucurbita moschata (Rifu)	cmocmoB128

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G007610	Watermelon (97103) v2	cmowmbB784
CmoCh05G007610	Wax gourd	cmowgoB0927
CmoCh05G007610	Cucurbita moschata (Rifu)	cmocmoB149
CmoCh05G007610	Cucurbita maxima (Rimu)	cmacmoB191
CmoCh05G007610	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G007610	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G007610	Melon (DHL92) v3.5.1	cmomeB725
CmoCh05G007610	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G007610	Cucurbita pepo (Zucchini)	cmocpeB743
CmoCh05G007610	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G007610	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G007610	Melon (DHL92) v3.6.1	cmomedB822
CmoCh05G007610	Cucumber (Chinese Long) v3	cmocucB0920