MELO3C017050 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017050
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Late embryogenesis abundant protein group 8 protein
Location	chr7 : 226156 .. 226422 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGCAGGGACAGCACCAAATGATGGGTAAGATGGAAGAGAAGGCCCCGGTGGAGGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGCGGAGGGACATCTTGAGCCCAAGCCTAATCAGGGCGGCGGCACCGACGCACCCACCTTGTCCGGCAGCGGCTATCCGGAGGTGCAGCCCACCACCATTGATGTCGTTACCAAACAAGGCCTTATCCATTGA

mRNA sequence

ATGGAAGAGCAGGGACAGCACCAAATGATGGGTAAGATGGAAGAGAAGGCCCCGGTGGAGGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGCGGAGGGACATCTTGAGCCCAAGCCTAATCAGGGCGGCGGCACCGACGCACCCACCTTGTCCGGCAGCGGCTATCCGGAGGTGCAGCCCACCACCATTGATGTCGTTACCAAACAAGGCCTTATCCATTGA

Coding sequence (CDS)

ATGGAAGAGCAGGGACAGCACCAAATGATGGGTAAGATGGAAGAGAAGGCCCCGGTGGAGGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGCGGAGGGACATCTTGAGCCCAAGCCTAATCAGGGCGGCGGCACCGACGCACCCACCTTGTCCGGCAGCGGCTATCCGGAGGTGCAGCCCACCACCATTGATGTCGTTACCAAACAAGGCCTTATCCATTGA

Protein sequence

MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGYPEVQPTTIDVVTKQGLIH*

Homology

[Close]

BLAST of MELO3C017050 vs. TrEMBL
Match: A0A0A0L5Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664380 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.5e-33
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 13  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGYPE 72
           MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYG EGHL PKPNQGGGTDAPTLSGSG PE
Sbjct: 80  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 139

Query: 73  VQPTTIDVVTKQGLI 88
           VQPTTID+VTKQGLI
Sbjct: 140 VQPTTIDIVTKQGLI 154

[Close]

BLAST of MELO3C017050 vs. TrEMBL
Match: B9T4J9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0396800 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-16
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1


Query: 1  MEEQGQHQMMGKMEE-------KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPK 60
          ME++GQ   + + E+       K  V+ +LP++ SPY++YKDLE+YK+KGYG EGHL+PK
Sbjct: 1  MEKEGQENTIERKEDINRDQHKKESVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPK 60

Query: 61 PNQG-GGTDAPTLSGSGYP-EVQPTTIDVVTKQ 85
          P +G G TDAPTLSG   P E   +TID +T +
Sbjct: 61 PGRGAGATDAPTLSGGSVPREADVSTIDAITSK 93

[Close]

BLAST of MELO3C017050 vs. TrEMBL
Match: F6I6V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.0e-16
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 12 KMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQ-GGGTDAPTLSGSGY 71
          + EEKA     LP+ESSPY+KY DLE+YKR+GYG EGHLEPKPNQ GGGTDAPTL+G+  
Sbjct: 17 RAEEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGGTDAPTLAGTDL 76

Query: 72 PEVQPTTIDVVTKQGL 87
           +   + +D   + G+
Sbjct: 77 SKGPASVVDAAHRVGI 92

[Close]

BLAST of MELO3C017050 vs. TrEMBL
Match: E5FHZ6_ARAHY (Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea GN=LEA8-1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-15
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 14 EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQG-GGTDAPTLSGSGY-P 73
          +E +  E+LLP+E SPYVKYKDLE+YKRKGYG EGH EPKP +G G TDAPT SG+    
Sbjct: 19 KESSSTEELLPMEDSPYVKYKDLEDYKRKGYGTEGHQEPKPGRGAGATDAPTPSGAAVSS 78

Query: 74 EVQPTTIDVVTKQGL 87
          E + +  + V +QG+
Sbjct: 79 EAELSATEAVNRQGV 93

[Close]

BLAST of MELO3C017050 vs. TrEMBL
Match: A0A067KP57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08044 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-15
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1


Query: 3  EQGQHQM---MGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG 62
          E G  QM     ++EEK  + + LPL+SSPY++ +DLE+YKR+GYG EGH + KPN GGG
Sbjct: 2  ESGSEQMERRKAEIEEKKAMTEGLPLQSSPYLRCQDLEDYKRQGYGTEGHRQVKPNHGGG 61

Query: 63 -TDAPTLSGSGYPEVQP 76
           TDAPTLSG+G PE  P
Sbjct: 62 ATDAPTLSGTGLPEGTP 78

[Close]

BLAST of MELO3C017050 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 70.1 bits (170), Expect = 7.9e-13
Identity = 35/63 (55.56%), Postives = 39/63 (61.90%), Query Frame = 1


Query: 10 MGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLSGS 69
          M K EEK      LPLE+SPY KY+D+E+YK+  YG  GH + KP  GGG TDAPT SG 
Sbjct: 1  MSKSEEKQE----LPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGHGGGTTDAPTPSGD 59

Query: 70 GYP 72
            P
Sbjct: 61 AAP 59

[Close]

BLAST of MELO3C017050 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 63.2 bits (152), Expect = 9.6e-11
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 12 KMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLS---- 71
          + E K    D L    +PY+ Y +LE+YK KGYGA+GH EPK   GGG TDAPT S    
Sbjct: 11 EQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPTPSGGLG 70

Query: 72 -GSGYPEVQPTTIDVVTKQGL 87
           G G      ++ D + +QG+
Sbjct: 71 RGGGAASTDLSSTDAINRQGV 91

[Close]

BLAST of MELO3C017050 vs. TAIR10
Match: AT2G23120.1 (AT2G23120.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 54.3 bits (129), Expect = 4.5e-08
Identity = 27/41 (65.85%), Postives = 27/41 (65.85%), Query Frame = 1


Query: 28 SPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLSG 68
          SPY+    LE+YK K YGAEGH EP P  GGG TDAPT SG
Sbjct: 30 SPYMATGTLEDYKLKAYGAEGHQEPTPGLGGGSTDAPTPSG 70

[Close]

BLAST of MELO3C017050 vs. NCBI nr
Match: gi|659105076|ref|XP_008453005.1| (PREDICTED: uncharacterized protein LOC103493838 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 3.6e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT 60
          MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT
Sbjct: 1  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT 60

Query: 61 DAPTLSGSGYPEVQPTTIDVVTKQGLIH 89
          DAPTLSGSGYPEVQPTTIDVVTKQGLIH
Sbjct: 61 DAPTLSGSGYPEVQPTTIDVVTKQGLIH 88

[Close]

BLAST of MELO3C017050 vs. NCBI nr
Match: gi|700200373|gb|KGN55531.1| (hypothetical protein Csa_4G664380 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 13  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGYPE 72
           MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYG EGHL PKPNQGGGTDAPTLSGSG PE
Sbjct: 80  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 139

Query: 73  VQPTTIDVVTKQGLI 88
           VQPTTID+VTKQGLI
Sbjct: 140 VQPTTIDIVTKQGLI 154

[Close]

BLAST of MELO3C017050 vs. NCBI nr
Match: gi|255584906|ref|XP_002533168.1| (PREDICTED: uncharacterized protein LOC8261670 [Ricinus communis])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1


Query: 1  MEEQGQHQMMGKMEE-------KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPK 60
          ME++GQ   + + E+       K  V+ +LP++ SPY++YKDLE+YK+KGYG EGHL+PK
Sbjct: 1  MEKEGQENTIERKEDINRDQHKKESVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPK 60

Query: 61 PNQG-GGTDAPTLSGSGYP-EVQPTTIDVVTKQ 85
          P +G G TDAPTLSG   P E   +TID +T +
Sbjct: 61 PGRGAGATDAPTLSGGSVPREADVSTIDAITSK 93

[Close]

BLAST of MELO3C017050 vs. NCBI nr
Match: gi|731427493|ref|XP_010663997.1| (PREDICTED: uncharacterized protein LOC104882448 [Vitis vinifera])

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 12 KMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQ-GGGTDAPTLSGSGY 71
          + EEKA     LP+ESSPY+KY DLE+YKR+GYG EGHLEPKPNQ GGGTDAPTL+G+  
Sbjct: 17 RAEEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGGTDAPTLAGTDL 76

Query: 72 PEVQPTTIDVVTKQGL 87
           +   + +D   + G+
Sbjct: 77 SKGPASVVDAAHRVGI 92

[Close]

BLAST of MELO3C017050 vs. NCBI nr
Match: gi|1012126867|ref|XP_015963873.1| (PREDICTED: uncharacterized protein LOC107487691 [Arachis duranensis])

HSP 1 Score: 89.0 bits (219), Expect = 4.6e-15
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 14  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQG-GGTDAPTLSGSGY-P 73
           +E +  E+LLP+E SPYVKYKDLE+YKRKGYG EGH EPKP +G G TDAPT SG+    
Sbjct: 34  KESSSTEELLPMEDSPYVKYKDLEDYKRKGYGTEGHQEPKPGRGAGATDAPTPSGAAVSS 93

Query: 74  EVQPTTIDVVTKQGL 87
           E + +  + V +QG+
Sbjct: 94  EAELSATEAVNRQGV 108

The following BLAST results are available for this feature:

BLAST of MELO3C017050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Y6_CUCSA	1.5e-33	94.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664380 PE=4 SV=1	[more]
B9T4J9_RICCO	1.0e-16	49.46	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0396800 PE=4 SV=1	[more]
F6I6V2_VITVI	5.0e-16	57.89	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=...	[more]
E5FHZ6_ARAHY	3.2e-15	57.33	Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea GN=LEA8-...	[more]
A0A067KP57_JATCU	5.5e-15	57.14	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08044 PE=4 SV=1	[more]

BLAST of MELO3C017050 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	7.9e-13	55.56	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	9.6e-11	43.21	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	4.5e-08	65.85	Late embryogenesis abundant protein, group 6	[more]

BLAST of MELO3C017050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105076\|ref\|XP_008453005.1\|	3.6e-44	100.00	PREDICTED: uncharacterized protein LOC103493838 [Cucumis melo]	[more]
gi\|700200373\|gb\|KGN55531.1\|	2.2e-33	94.67	hypothetical protein Csa_4G664380 [Cucumis sativus]	[more]
gi\|255584906\|ref\|XP_002533168.1\|	1.4e-16	49.46	PREDICTED: uncharacterized protein LOC8261670 [Ricinus communis]	[more]
gi\|731427493\|ref\|XP_010663997.1\|	7.1e-16	57.89	PREDICTED: uncharacterized protein LOC104882448 [Vitis vinifera]	[more]
gi\|1012126867\|ref\|XP_015963873.1\|	4.6e-15	57.33	PREDICTED: uncharacterized protein LOC107487691 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017050T1	MELO3C017050T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 16..86 score: 3.3
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 12..67 score: 6.9
None	No IPR available	PANTHER	PTHR33922:SF3	LATE EMBRYOGENESIS ABUNDANT PROTEIN, GROUP 6	coord: 12..67 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C017050	Csa4G664380	Cucumber (Chinese Long) v2	cumeB313
MELO3C017050	Cla023470	Watermelon (97103) v1	mewmB545
MELO3C017050	ClCG11G018960	Watermelon (Charleston Gray)	mewcgB463
MELO3C017050	Cla97C11G225090	Watermelon (97103) v2	mewmbB473
MELO3C017050	Bhi09G002363	Wax gourd	mewgoB595
MELO3C017050	CSPI04G27180	Wild cucumber (PI 183967)	cpimeB311
MELO3C017050	Cucsa.272350	Cucumber (Gy14) v1	cgymeB454
MELO3C017050	CmaCh09G000300	Cucurbita maxima (Rimu)	cmameB037
MELO3C017050	CmoCh01G020890	Cucurbita moschata (Rifu)	cmomeB434
MELO3C017050	CmoCh09G000310	Cucurbita moschata (Rifu)	cmomeB026
MELO3C017050	Lsi04G018320	Bottle gourd (USVL1VR-Ls)	lsimeB323
MELO3C017050	Cp4.1LG02g08610	Cucurbita pepo (Zucchini)	cpemeB531
MELO3C017050	CsGy4G025490	Cucumber (Gy14) v2	cgybmeB270
MELO3C017050	Carg08609	Silver-seed gourd	carmeB0107
MELO3C017050	Carg21353	Silver-seed gourd	carmeB0363
MELO3C017050	CsaV3_4G037560	Cucumber (Chinese Long) v3	cucmeB316

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C017050	Watermelon (97103) v2	mewmbB505
MELO3C017050	Melon (DHL92) v3.5.1	memeB126
MELO3C017050	Cucurbita maxima (Rimu)	cmameB183
MELO3C017050	Cucurbita maxima (Rimu)	cmameB442
MELO3C017050	Cucurbita maxima (Rimu)	cmameB742
MELO3C017050	Cucurbita moschata (Rifu)	cmomeB730
MELO3C017050	Wild cucumber (PI 183967)	cpimeB505
MELO3C017050	Watermelon (97103) v1	mewmB500
MELO3C017050	Cucurbita pepo (Zucchini)	cpemeB731
MELO3C017050	Bottle gourd (USVL1VR-Ls)	lsimeB487
MELO3C017050	Cucumber (Chinese Long) v3	cucmeB515