Carg21353 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21353
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein
Location	Cucurbita_argyrosperma_scaffold_209 : 101326 .. 101610 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAGATGGAAGAGCATGAGCCGCCGCAGCAGCAAATGAGGCGGGAAACCGAAGAAGAGAAGGGTTCGGTGGAAGAACTGCTGCCACTGGAGAGCAGTCCTTACGTGAAATACAAGGACTTGGAAGACTACAAAAACAAGGGGTATGGGGTGGAGGGCCATATTGAGCCCAAGCCCATTCAGGGCGGCGGCACCGATGCCCCCACCTTGTCCGGCAGCGGCTTCCCAGAGGTGGCTCCAGCCTCCATTGACGCCGTCACCAGACAAGGCCTTATCCACTGA

mRNA sequence

ATGTGGAAGATGGAAGAGCATGAGCCGCCGCAGCAGCAAATGAGGCGGGAAACCGAAGAAGAGAAGGGTTCGGTGGAAGAACTGCTGCCACTGGAGAGCAGTCCTTACGTGAAATACAAGGACTTGGAAGACTACAAAAACAAGGGGTATGGGGTGGAGGGCCATATTGAGCCCAAGCCCATTCAGGGCGGCGGCACCGATGCCCCCACCTTGTCCGGCAGCGGCTTCCCAGAGGTGGCTCCAGCCTCCATTGACGCCGTCACCAGACAAGGCCTTATCCACTGA

Coding sequence (CDS)

ATGTGGAAGATGGAAGAGCATGAGCCGCCGCAGCAGCAAATGAGGCGGGAAACCGAAGAAGAGAAGGGTTCGGTGGAAGAACTGCTGCCACTGGAGAGCAGTCCTTACGTGAAATACAAGGACTTGGAAGACTACAAAAACAAGGGGTATGGGGTGGAGGGCCATATTGAGCCCAAGCCCATTCAGGGCGGCGGCACCGATGCCCCCACCTTGTCCGGCAGCGGCTTCCCAGAGGTGGCTCCAGCCTCCATTGACGCCGTCACCAGACAAGGCCTTATCCACTGA

Protein sequence

MWKMEEHEPPQQQMRRETEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH

Homology

[Close]

BLAST of Carg21353 vs. NCBI nr
Match: XP_022937316.1 (uncharacterized protein LOC111443639 [Cucurbita moschata])

HSP 1 Score: 125.9 bits (315), Expect = 7.0e-26
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 24 SVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPAS 83
          SVEELLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGGGTDAPTLSGSGFPEV PA+
Sbjct: 23 SVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPAT 82

Query: 84 IDAVTRQGLI 94
          ID VT  GL+
Sbjct: 83 IDFVTNHGLL 92

[Close]

BLAST of Carg21353 vs. NCBI nr
Match: XP_023535424.1 (uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 25 VEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASI 84
          VEELLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGGGTDAPTLSGSGFPEV PA+I
Sbjct: 24 VEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPATI 83

Query: 85 DAVTRQGLI 94
          D VT  GL+
Sbjct: 84 DFVTNHGLL 92

[Close]

BLAST of Carg21353 vs. NCBI nr
Match: KGN55531.1 (hypothetical protein Csa_4G664380 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 25  VEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASI 84
           VE+LLPLESSPYVKYKDLE+YK KGYGVEGH+ PKP QGGGTDAPTLSGSG PEV P +I
Sbjct: 86  VEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPEVQPTTI 145

Query: 85  DAVTRQGLI 94
           D VT+QGLI
Sbjct: 146 DIVTKQGLI 154

[Close]

BLAST of Carg21353 vs. NCBI nr
Match: XP_022135734.1 (uncharacterized protein LOC111007621 [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 24  SVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQ---GGGTDAPTLSGSGFPEVA 83
           SVEELLPLESSPYVKYKDLE+YK +GYG EGH+EPKP Q   GGGTDAPTLSG+GFPEV 
Sbjct: 28  SVEELLPLESSPYVKYKDLEEYKREGYGAEGHLEPKPNQGQGGGGTDAPTLSGAGFPEVK 87

Query: 84  PASIDAVTRQGLI 94
           P++ID  T QGLI
Sbjct: 88  PSTIDVATNQGLI 100

[Close]

BLAST of Carg21353 vs. NCBI nr
Match: XP_025652440.1 (uncharacterized protein LOC112748417 [Arachis hypogaea] >ADQ91847.1 late embryogenesis abundant protein group 8 protein [Arachis hypogaea])

HSP 1 Score: 89.0 bits (219), Expect = 9.5e-15
Identity = 47/71 (66.20%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 24 SVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQG-GGTDAPTLSGSGFPEVAPA 83
          S EELLP+E SPYVKYKDLEDYK KGYG EGH EPKP +G G TDAPT SG+     A  
Sbjct: 23 STEELLPMEDSPYVKYKDLEDYKRKGYGTEGHQEPKPGRGAGATDAPTPSGAAVSSEAEL 82

Query: 84 S-IDAVTRQGL 93
          S  +AV RQG+
Sbjct: 83 SATEAVNRQGV 93

[Close]

BLAST of Carg21353 vs. TAIR10
Match: AT2G33690.1 (Late embryogenesis abundant protein, group 6)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-12
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 29 LPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG-TDAPTLSGSGFPEVAPASIDAV 88
          LPLE+SPY KY+D+EDYK   YG  GH + KP  GGG TDAPT SG    + AP++ID+ 
Sbjct: 10 LPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGHGGGTTDAPTPSG----DAAPSAIDSA 68

Query: 89 TRQ 91
           ++
Sbjct: 70 NQK 68

[Close]

BLAST of Carg21353 vs. TAIR10
Match: AT2G23110.1 (Late embryogenesis abundant protein, group 6)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-10
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 34 SPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG-TDAPTLS-----GSGFPEVAPASIDAV 93
          +PY+ Y +LEDYK KGYG +GH EPK   GGG TDAPT S     G G      +S DA+
Sbjct: 27 TPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPTPSGGLGRGGGAASTDLSSTDAI 86

[Close]

BLAST of Carg21353 vs. TAIR10
Match: AT2G23120.1 (Late embryogenesis abundant protein, group 6)

HSP 1 Score: 50.8 bits (120), Expect = 5.2e-07
Identity = 26/41 (63.41%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 34 SPYVKYKDLEDYKNKGYGVEGHIEPKP-IQGGGTDAPTLSG 74
          SPY+    LEDYK K YG EGH EP P + GG TDAPT SG
Sbjct: 30 SPYMATGTLEDYKLKAYGAEGHQEPTPGLGGGSTDAPTPSG 70

[Close]

BLAST of Carg21353 vs. TrEMBL
Match: tr|A0A0A0L5Y6|A0A0A0L5Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.7e-25
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 25  VEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASI 84
           VE+LLPLESSPYVKYKDLE+YK KGYGVEGH+ PKP QGGGTDAPTLSGSG PEV P +I
Sbjct: 86  VEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPEVQPTTI 145

Query: 85  DAVTRQGLI 94
           D VT+QGLI
Sbjct: 146 DIVTKQGLI 154

[Close]

BLAST of Carg21353 vs. TrEMBL
Match: tr|E5FHZ6|E5FHZ6_ARAHY (Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea OX=3818 GN=LEA8-1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15
Identity = 47/71 (66.20%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 24 SVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQG-GGTDAPTLSGSGFPEVAPA 83
          S EELLP+E SPYVKYKDLEDYK KGYG EGH EPKP +G G TDAPT SG+     A  
Sbjct: 23 STEELLPMEDSPYVKYKDLEDYKRKGYGTEGHQEPKPGRGAGATDAPTPSGAAVSSEAEL 82

Query: 84 S-IDAVTRQGL 93
          S  +AV RQG+
Sbjct: 83 SATEAVNRQGV 93

[Close]

BLAST of Carg21353 vs. TrEMBL
Match: tr|B9T4J9|B9T4J9_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0396800 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 24 SVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQG-GGTDAPTLSGSGFPEVAPA 83
          SV+++LP++ SPY++YKDLEDYK KGYG EGH++PKP +G G TDAPTLSG   P  A  
Sbjct: 25 SVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPKPGRGAGATDAPTLSGGSVPREADV 84

Query: 84 S-IDAVT 89
          S IDA+T
Sbjct: 85 STIDAIT 91

[Close]

BLAST of Carg21353 vs. TrEMBL
Match: tr|F6I6V2|F6I6V2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0122g00820 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-14
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 29 LPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQ-GGGTDAPTLSGSGFPEVAPASIDAV 88
          LP+ESSPY+KY DLEDYK +GYG EGH+EPKP Q GGGTDAPTL+G+   +   + +DA 
Sbjct: 28 LPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGGTDAPTLAGTDLSKGPASVVDAA 87

Query: 89 TRQGL 93
           R G+
Sbjct: 88 HRVGI 92

[Close]

BLAST of Carg21353 vs. TrEMBL
Match: tr|A0A2P5FSL2|A0A2P5FSL2_9ROSA (Late embryogenesis abundant protein OS=Trema orientalis OX=63057 GN=TorRG33x02_033920 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 27 ELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG--TDAPTLSGSGFPEVAPA-- 86
          E LP+E SPY++YKDLEDYK KGYG EGH+EPKP +G G  TDAPTLSG      A A  
Sbjct: 27 EGLPMEDSPYLQYKDLEDYKKKGYGTEGHLEPKPGRGAGASTDAPTLSGGSITAQAEAQA 86

Query: 87 -SIDAVTRQGL 93
           + D++ RQG+
Sbjct: 87 WATDSINRQGV 97

The following BLAST results are available for this feature:

BLAST of Carg21353 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937316.1	7.0e-26	84.29	uncharacterized protein LOC111443639 [Cucurbita moschata]	[more]
XP_023535424.1	2.0e-25	84.06	uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo]	[more]
KGN55531.1	1.0e-24	82.61	hypothetical protein Csa_4G664380 [Cucumis sativus]	[more]
XP_022135734.1	1.1e-23	78.08	uncharacterized protein LOC111007621 [Momordica charantia]	[more]
XP_025652440.1	9.5e-15	66.20	uncharacterized protein LOC112748417 [Arachis hypogaea] >ADQ91847.1 late embryog...	[more]

BLAST of Carg21353 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	1.8e-12	53.97	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	3.0e-10	52.31	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	5.2e-07	63.41	Late embryogenesis abundant protein, group 6	[more]

BLAST of Carg21353 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg21353 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5Y6\|A0A0A0L5Y6_CUCSA	6.7e-25	82.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1	[more]
tr\|E5FHZ6\|E5FHZ6_ARAHY	6.3e-15	66.20	Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea OX=3818 ...	[more]
tr\|B9T4J9\|B9T4J9_RICCO	1.4e-14	62.69	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0396800 PE=4 SV=1	[more]
tr\|F6I6V2\|F6I6V2_VITVI	5.3e-14	61.54	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0122g00820 PE=4 SV=...	[more]
tr\|A0A2P5FSL2\|A0A2P5FSL2_9ROSA	2.6e-13	59.15	Late embryogenesis abundant protein OS=Trema orientalis OX=63057 GN=TorRG33x02_0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21353-RA	Carg21353-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 22..92 e-value: 5.4E-28 score: 96.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..79
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 4..91
None	No IPR available	PANTHER	PTHR33922:SF9	EXPRESSED PROTEIN-RELATED	coord: 4..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21353	Cla023470	Watermelon (97103) v1	carwmB0350
Carg21353	Csa4G664380	Cucumber (Chinese Long) v2	carcuB0388
Carg21353	MELO3C017050	Melon (DHL92) v3.5.1	carmeB0363
Carg21353	ClCG11G018960	Watermelon (Charleston Gray)	carwcgB0349
Carg21353	CSPI04G27180	Wild cucumber (PI 183967)	carcpiB0393
Carg21353	Cucsa.272350	Cucumber (Gy14) v1	carcgyB0417
Carg21353	CmaCh09G000300	Cucurbita maxima (Rimu)	carcmaB0501
Carg21353	CmoCh09G000310	Cucurbita moschata (Rifu)	carcmoB0484
Carg21353	CmoCh01G020890	Cucurbita moschata (Rifu)	carcmoB0486
Carg21353	Lsi04G018320	Bottle gourd (USVL1VR-Ls)	carlsiB324
Carg21353	Cp4.1LG02g08610	Cucurbita pepo (Zucchini)	carcpeB0498
Carg21353	CsGy4G025490	Cucumber (Gy14) v2	carcgybB0368
Carg21353	MELO3C017050.2	Melon (DHL92) v3.6.1	carmedB0368
Carg21353	CsaV3_4G037560	Cucumber (Chinese Long) v3	carcucB0392
Carg21353	Bhi09G002363	Wax gourd	carwgoB0440

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21353	Carg08609	Silver-seed gourd	carcarB120

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21353	Silver-seed gourd	carcarB248
Carg21353	Cucumber (Gy14) v1	carcgyB0416
Carg21353	Cucurbita maxima (Rimu)	carcmaB0502
Carg21353	Cucurbita maxima (Rimu)	carcmaB0503
Carg21353	Cucurbita maxima (Rimu)	carcmaB0504
Carg21353	Cucurbita moschata (Rifu)	carcmoB0485
Carg21353	Cucurbita moschata (Rifu)	carcmoB0487
Carg21353	Cucurbita pepo (Zucchini)	carcpeB0500
Carg21353	Cucurbita pepo (Zucchini)	carcpeB0497
Carg21353	Cucurbita pepo (Zucchini)	carcpeB0499
Carg21353	Bottle gourd (USVL1VR-Ls)	carlsiB326
Carg21353	Melon (DHL92) v3.5.1	carmeB0362
Carg21353	Melon (DHL92) v3.6.1	carmedB0367
Carg21353	Watermelon (Charleston Gray)	carwcgB0350
Carg21353	Watermelon (97103) v1	carwmB0348
Carg21353	Watermelon (97103) v2	carwmbB0373
Carg21353	Watermelon (97103) v2	carwmbB0375