Csa4G664380 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G664380
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Late embryogenesis abundant protein group 8 protein; contains IPR018930 (Late embryogenesis abundant protein, LEA-18)
Location	Chr4 : 23125281 .. 23125978 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAATATGTGGTGGGGAAACTTGCAGAGACGATAAGTAATAGAAAGCAGTGGGTGGAGGATGGAGAGCCAGCCATTTTTGTCTGGGCACAAAAGCTTCATCGTTATGTAATGCATATACACAGAAACAGACAACCACCGCCACGAAGCTTCTTCTTGGGTCCCCTCTGCATTAATTGATCAGTAACTTTCAATCCTCAACTGTGACTTTGTAATTTACAACATACATGAATTTTACATAATATGATTATGATTTCTTTTTTAAGTTTTATGGTTTGCGATTGTGGGGCTCAGAGGAGAGAGCGGGTCAAGAGGGAGCTGAACTTTTGGAAACACATGGACATAATTGGTTCCTTTATTTGAGGATTGTATGCATAAGTAAGAGGTGAAAAAACAGAGTCTGTTCAAAGAGGGAAAAAATGTCGAACATGGAAGAGCAAGGACAGCACCAAATGATGGGGAAGATGGAAGAGAAGGCCCCGGTGGAAGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATATAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGTGGAGGGGCATCTTGTGCCCAAGCCTAATCAGGGCGGCGGCACCGATGCACCCACCTTGTCCGGCAGCGGCTTACCGGAGGTGCAGCCTACCACCATTGATATCGTTACCAAACAAGGCCTTATTCGTTGA

mRNA sequence

ATGAGAGAATATGTGGTGGGGAAACTTGCAGAGACGATAAGTAATAGAAAGCAGTGGGTGGAGGATGGAGAGCCAGCCATTTTTGTCTGGGCACAAAAGCTTCATCGTTATGTAATGCATATACACAGAAACAGACAACCACCGCCACGAAGCTTCTTCTTGGAGGAGAGAGCGGGTCAAGAGGGAGCTGAACTTTTGGAAACACATGGACATAATTGGTTCCTTTATTTGAGGATTATGGAAGAGAAGGCCCCGGTGGAAGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATATAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGTGGAGGGGCATCTTGTGCCCAAGCCTAATCAGGGCGGCGGCACCGATGCACCCACCTTGTCCGGCAGCGGCTTACCGGAGGTGCAGCCTACCACCATTGATATCGTTACCAAACAAGGCCTTATTCGTTGA

Coding sequence (CDS)

ATGAGAGAATATGTGGTGGGGAAACTTGCAGAGACGATAAGTAATAGAAAGCAGTGGGTGGAGGATGGAGAGCCAGCCATTTTTGTCTGGGCACAAAAGCTTCATCGTTATGTAATGCATATACACAGAAACAGACAACCACCGCCACGAAGCTTCTTCTTGGAGGAGAGAGCGGGTCAAGAGGGAGCTGAACTTTTGGAAACACATGGACATAATTGGTTCCTTTATTTGAGGATTATGGAAGAGAAGGCCCCGGTGGAAGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATATAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGTGGAGGGGCATCTTGTGCCCAAGCCTAATCAGGGCGGCGGCACCGATGCACCCACCTTGTCCGGCAGCGGCTTACCGGAGGTGCAGCCTACCACCATTGATATCGTTACCAAACAAGGCCTTATTCGTTGA

Protein sequence

MREYVVGKLAETISNRKQWVEDGEPAIFVWAQKLHRYVMHIHRNRQPPPRSFFLEERAGQEGAELLETHGHNWFLYLRIMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR*

Homology

[Close]

BLAST of Csa4G664380 vs. TrEMBL
Match: A0A0A0L5Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664380 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 8.0e-86
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MREYVVGKLAETISNRKQWVEDGEPAIFVWAQKLHRYVMHIHRNRQPPPRSFFLEERAGQ 60
           MREYVVGKLAETISNRKQWVEDGEPAIFVWAQKLHRYVMHIHRNRQPPPRSFFLEERAGQ
Sbjct: 1   MREYVVGKLAETISNRKQWVEDGEPAIFVWAQKLHRYVMHIHRNRQPPPRSFFLEERAGQ 60

Query: 61  EGAELLETHGHNWFLYLRIMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPK 120
           EGAELLETHGHNWFLYLRIMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPK
Sbjct: 61  EGAELLETHGHNWFLYLRIMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPK 120

Query: 121 PNQGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR 156
           PNQGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR
Sbjct: 121 PNQGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR 155

[Close]

BLAST of Csa4G664380 vs. TrEMBL
Match: F6I6V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-15
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 81  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQ-GGGTDAPTLSGSGLPE 140
           EEKA     LP+ESSPY+KY DLE+YKR+GYG EGHL PKPNQ GGGTDAPTL+G+ L +
Sbjct: 19  EEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGGTDAPTLAGTDLSK 78

Query: 141 VQPTTIDIVTKQGL 154
              + +D   + G+
Sbjct: 79  GPASVVDAAHRVGI 92

[Close]

BLAST of Csa4G664380 vs. TrEMBL
Match: B9T4J9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0396800 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-15
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 78  RIMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG-GGTDAPTLSGSG 137
           R   +K  V+ +LP++ SPY++YKDLE+YK+KGYG EGHL PKP +G G TDAPTLSG  
Sbjct: 18  RDQHKKESVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPKPGRGAGATDAPTLSGGS 77

Query: 138 LP-EVQPTTIDIVTKQ 152
           +P E   +TID +T +
Sbjct: 78  VPREADVSTIDAITSK 93

[Close]

BLAST of Csa4G664380 vs. TrEMBL
Match: E5FHZ6_ARAHY (Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea GN=LEA8-1 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-14
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 81  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG-GGTDAPTLSGSGL-P 140
           +E +  E+LLP+E SPYVKYKDLE+YKRKGYG EGH  PKP +G G TDAPT SG+ +  
Sbjct: 19  KESSSTEELLPMEDSPYVKYKDLEDYKRKGYGTEGHQEPKPGRGAGATDAPTPSGAAVSS 78

Query: 141 EVQPTTIDIVTKQGL 154
           E + +  + V +QG+
Sbjct: 79  EAELSATEAVNRQGV 93

[Close]

BLAST of Csa4G664380 vs. TrEMBL
Match: A0A067KP57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08044 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 80  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGG-TDAPTLSGSGLP 139
           +EEK  + + LPL+SSPY++ +DLE+YKR+GYG EGH   KPN GGG TDAPTLSG+GLP
Sbjct: 15  IEEKKAMTEGLPLQSSPYLRCQDLEDYKRQGYGTEGHRQVKPNHGGGATDAPTLSGTGLP 74

Query: 140 EVQP 143
           E  P
Sbjct: 75  EGTP 78

[Close]

BLAST of Csa4G664380 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-11
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 83  KAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGG-TDAPTLSGSGLP 139
           K+  +  LPLE+SPY KY+D+E+YK+  YG  GH   KP  GGG TDAPT SG   P
Sbjct: 3   KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGHGGGTTDAPTPSGDAAP 59

[Close]

BLAST of Csa4G664380 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-09
Identity = 33/79 (41.77%), Postives = 41/79 (51.90%), Query Frame = 1


Query: 81  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGG-TDAPTLS-----G 140
           E K    D L    +PY+ Y +LE+YK KGYG +GH  PK   GGG TDAPT S     G
Sbjct: 13  EVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPTPSGGLGRG 72

Query: 141 SGLPEVQPTTIDIVTKQGL 154
            G      ++ D + +QG+
Sbjct: 73  GGAASTDLSSTDAINRQGV 91

[Close]

BLAST of Csa4G664380 vs. NCBI nr
Match: gi|700200373|gb|KGN55531.1| (hypothetical protein Csa_4G664380 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 1.1e-85
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MREYVVGKLAETISNRKQWVEDGEPAIFVWAQKLHRYVMHIHRNRQPPPRSFFLEERAGQ 60
           MREYVVGKLAETISNRKQWVEDGEPAIFVWAQKLHRYVMHIHRNRQPPPRSFFLEERAGQ
Sbjct: 1   MREYVVGKLAETISNRKQWVEDGEPAIFVWAQKLHRYVMHIHRNRQPPPRSFFLEERAGQ 60

Query: 61  EGAELLETHGHNWFLYLRIMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPK 120
           EGAELLETHGHNWFLYLRIMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPK
Sbjct: 61  EGAELLETHGHNWFLYLRIMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPK 120

Query: 121 PNQGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR 156
           PNQGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR
Sbjct: 121 PNQGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR 155

[Close]

BLAST of Csa4G664380 vs. NCBI nr
Match: gi|659105076|ref|XP_008453005.1| (PREDICTED: uncharacterized protein LOC103493838 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 3.9e-33
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 80  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 139
           MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYG EGHL PKPNQGGGTDAPTLSGSG PE
Sbjct: 13  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGYPE 72

Query: 140 VQPTTIDIVTKQGLI 155
           VQPTTID+VTKQGLI
Sbjct: 73  VQPTTIDVVTKQGLI 87

[Close]

BLAST of Csa4G664380 vs. NCBI nr
Match: gi|731427493|ref|XP_010663997.1| (PREDICTED: uncharacterized protein LOC104882448 [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 3.6e-15
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 81  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQ-GGGTDAPTLSGSGLPE 140
           EEKA     LP+ESSPY+KY DLE+YKR+GYG EGHL PKPNQ GGGTDAPTL+G+ L +
Sbjct: 19  EEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGGTDAPTLAGTDLSK 78

Query: 141 VQPTTIDIVTKQGL 154
              + +D   + G+
Sbjct: 79  GPASVVDAAHRVGI 92

[Close]

BLAST of Csa4G664380 vs. NCBI nr
Match: gi|255584906|ref|XP_002533168.1| (PREDICTED: uncharacterized protein LOC8261670 [Ricinus communis])

HSP 1 Score: 89.4 bits (220), Expect = 6.2e-15
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 78  RIMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG-GGTDAPTLSGSG 137
           R   +K  V+ +LP++ SPY++YKDLE+YK+KGYG EGHL PKP +G G TDAPTLSG  
Sbjct: 18  RDQHKKESVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPKPGRGAGATDAPTLSGGS 77

Query: 138 LP-EVQPTTIDIVTKQ 152
           +P E   +TID +T +
Sbjct: 78  VPREADVSTIDAITSK 93

[Close]

BLAST of Csa4G664380 vs. NCBI nr
Match: gi|1012126867|ref|XP_015963873.1| (PREDICTED: uncharacterized protein LOC107487691 [Arachis duranensis])

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 81  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG-GGTDAPTLSGSGL-P 140
           +E +  E+LLP+E SPYVKYKDLE+YKRKGYG EGH  PKP +G G TDAPT SG+ +  
Sbjct: 34  KESSSTEELLPMEDSPYVKYKDLEDYKRKGYGTEGHQEPKPGRGAGATDAPTPSGAAVSS 93

Query: 141 EVQPTTIDIVTKQGL 154
           E + +  + V +QG+
Sbjct: 94  EAELSATEAVNRQGV 108

The following BLAST results are available for this feature:

BLAST of Csa4G664380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Y6_CUCSA	8.0e-86	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664380 PE=4 SV=1	[more]
F6I6V2_VITVI	2.5e-15	59.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=...	[more]
B9T4J9_RICCO	4.3e-15	55.26	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0396800 PE=4 SV=1	[more]
E5FHZ6_ARAHY	2.8e-14	56.00	Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea GN=LEA8-...	[more]
A0A067KP57_JATCU	4.8e-14	64.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08044 PE=4 SV=1	[more]

BLAST of Csa4G664380 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	2.0e-11	54.39	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	4.1e-09	41.77	Late embryogenesis abundant protein, group 6	[more]

BLAST of Csa4G664380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200373\|gb\|KGN55531.1\|	1.1e-85	100.00	hypothetical protein Csa_4G664380 [Cucumis sativus]	[more]
gi\|659105076\|ref\|XP_008453005.1\|	3.9e-33	94.67	PREDICTED: uncharacterized protein LOC103493838 [Cucumis melo]	[more]
gi\|731427493\|ref\|XP_010663997.1\|	3.6e-15	59.46	PREDICTED: uncharacterized protein LOC104882448 [Vitis vinifera]	[more]
gi\|255584906\|ref\|XP_002533168.1\|	6.2e-15	55.26	PREDICTED: uncharacterized protein LOC8261670 [Ricinus communis]	[more]
gi\|1012126867\|ref\|XP_015963873.1\|	4.0e-14	56.00	PREDICTED: uncharacterized protein LOC107487691 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU092398	cucumber EST collection version 3.0	transcribed_cluster
CU093254	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G664380.1	Csa4G664380.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU092398	CU092398	transcribed_cluster
CU093254	CU093254	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 84..153 score: 3.8
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 80..152 score: 6.0
None	No IPR available	PANTHER	PTHR33922:SF3	LATE EMBRYOGENESIS ABUNDANT PROTEIN, GROUP 6	coord: 80..152 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G664380	Cla023470	Watermelon (97103) v1	cuwmB350
Csa4G664380	MELO3C017050	Melon (DHL92) v3.5.1	cumeB313
Csa4G664380	ClCG11G018960	Watermelon (Charleston Gray)	cuwcgB280
Csa4G664380	Lsi04G018320	Bottle gourd (USVL1VR-Ls)	culsiB284
Csa4G664380	MELO3C017050.2	Melon (DHL92) v3.6.1	cumedB298
Csa4G664380	Cla97C11G225090	Watermelon (97103) v2	cuwmbB280
Csa4G664380	Bhi09G002363	Wax gourd	cuwgoB419
Csa4G664380	CSPI04G27180	Wild cucumber (PI 183967)	cpicuB181
Csa4G664380	Cucsa.272350	Cucumber (Gy14) v1	cgycuB387
Csa4G664380	CmaCh09G000300	Cucurbita maxima (Rimu)	cmacuB024
Csa4G664380	CmoCh09G000310	Cucurbita moschata (Rifu)	cmocuB015
Csa4G664380	CmoCh01G020890	Cucurbita moschata (Rifu)	cmocuB452
Csa4G664380	Cp4.1LG02g08610	Cucurbita pepo (Zucchini)	cpecuB572
Csa4G664380	CsGy4G025490	Cucumber (Gy14) v2	cgybcuB166
Csa4G664380	Carg08609	Silver-seed gourd	carcuB0113
Csa4G664380	Carg21353	Silver-seed gourd	carcuB0388

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G664380	Cucumber (Chinese Long) v2	cucuB151
Csa4G664380	Cucurbita maxima (Rimu)	cmacuB464
Csa4G664380	Cucurbita pepo (Zucchini)	cpecuB787