ClCG11G018960 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G018960
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Late embryogenesis abundant protein group 8 protein
Location	CG_Chr11 : 32050611 .. 32051229 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGACACAGAAACAGACAGCCACCGCCACGCAGCTTCTTCTTCTTCTTCTTCTTGGGTCCCCTCTGCATTAATCATCGGTCACTTTCAATCCTCAACTGCCAGTTTGTAATTTCAGCAATATTCAATACTTAAAATTAACATTATATGATTATGATTCAATTGAAATGTAGAGTTTGTGGTTGTGGGGCTCAGAGGGGAGAGCGGGTCAAATGGGAGCTGAACTTTTGGAAACACATGGACATAATTGCTCCCTTTATTTAAGGGTTGTGAATATAAGTAAAAGGTGAAAAAAAACAGGGTCTGTTCAGAGAGAGAGAGAGAGATGGAGAAAATGTCGAATAGCGAAGAGCAACCACAGCAGCAAATGATGGGGAAGAGAGAAGATAAGGCTCCGGTGGAAGATTTGCTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAAGAGTACAAAAGGAAAGGTTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCCAATCACGGCGGCGGCGGCGGCACTGATGCACCCACCTTGTCCGGCAGCGGCTTCCCGGAGGTGAAGCCCACCACCATTGACGTCGTCACCAAACAAGGCCTTATTCCCTGA

mRNA sequence

ATGCATAGACACAGAAACAGACAGCCACCGCCACGCAGCTTCTTCTTCTTCTTCTTCTTGGGTCCCCTCTGCATTAATCATCGGTCACTTTCAATCCTCAACTGCCAGTTTAGTTTGTGGTTGTGGGGCTCAGAGGGGAGAGCGGGTCAAATGGGAGCTGAACTTTTGGAAACACATGGACATAATTGCTCCCTTTATTTAAGGGTTATGGAGAAAATGTCGAATAGCGAAGAGCAACCACAGCAGCAAATGATGGGGAAGAGAGAAGATAAGGCTCCGGTGGAAGATTTGCTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAAGAGTACAAAAGGAAAGGTTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCCAATCACGGCGGCGGCGGCGGCACTGATGCACCCACCTTGTCCGGCAGCGGCTTCCCGGAGGTGAAGCCCACCACCATTGACGTCGTCACCAAACAAGGCCTTATTCCCTGA

Coding sequence (CDS)

ATGCATAGACACAGAAACAGACAGCCACCGCCACGCAGCTTCTTCTTCTTCTTCTTCTTGGGTCCCCTCTGCATTAATCATCGGTCACTTTCAATCCTCAACTGCCAGTTTAGTTTGTGGTTGTGGGGCTCAGAGGGGAGAGCGGGTCAAATGGGAGCTGAACTTTTGGAAACACATGGACATAATTGCTCCCTTTATTTAAGGGTTATGGAGAAAATGTCGAATAGCGAAGAGCAACCACAGCAGCAAATGATGGGGAAGAGAGAAGATAAGGCTCCGGTGGAAGATTTGCTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAAGAGTACAAAAGGAAAGGTTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCCAATCACGGCGGCGGCGGCGGCACTGATGCACCCACCTTGTCCGGCAGCGGCTTCCCGGAGGTGAAGCCCACCACCATTGACGTCGTCACCAAACAAGGCCTTATTCCCTGA

Protein sequence

MHRHRNRQPPPRSFFFFFFLGPLCINHRSLSILNCQFSLWLWGSEGRAGQMGAELLETHGHNCSLYLRVMEKMSNSEEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLIP

Homology

[Close]

BLAST of ClCG11G018960 vs. TrEMBL
Match: A0A0A0L5Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664380 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 102/164 (62.20%), Postives = 106/164 (64.63%), Query Frame = 1


Query: 1   MHRHRNRQPPPRSFFFFFFLGPLCINHRSLSILNCQFSLWLWGSEGRAGQMGAELLETHG 60
           MH HRNRQPPPRSFF                             E RAGQ GAELLETHG
Sbjct: 39  MHIHRNRQPPPRSFFL----------------------------EERAGQEGAELLETHG 98

Query: 61  HNCSLYLRVMEKMSNSEEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYG 120
           HN  LYLR+ME                  +KAPVEDLLPLESSPYVKYKDLEEYKRKGYG
Sbjct: 99  HNWFLYLRIME------------------EKAPVEDLLPLESSPYVKYKDLEEYKRKGYG 154

Query: 121 AEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI 165
            EGHL PKPN   GGGTDAPTLSGSG PEV+PTTID+VTKQGLI
Sbjct: 159 VEGHLVPKPNQ--GGGTDAPTLSGSGLPEVQPTTIDIVTKQGLI 154

[Close]

BLAST of ClCG11G018960 vs. TrEMBL
Match: F6I6V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-16
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1


Query: 73  MSNSEEQPQQQMMGKR--EDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN 132
           MS S EQ +++   +   E+KA     LP+ESSPY+KY DLE+YKR+GYG EGHLEPKPN
Sbjct: 1   MSKSGEQLRKKTEEEERAEEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPN 60

Query: 133 HGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGL 164
             GGGGTDAPTL+G+   +   + +D   + G+
Sbjct: 61  Q-GGGGTDAPTLAGTDLSKGPASVVDAAHRVGI 92

[Close]

BLAST of ClCG11G018960 vs. TrEMBL
Match: B9T4J9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0396800 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.2e-16
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1


Query: 77  EEQPQQQMMGKRED-------KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKP 136
           E++ Q+  + ++ED       K  V+ +LP++ SPY++YKDLE+YK+KGYG EGHL+PKP
Sbjct: 2   EKEGQENTIERKEDINRDQHKKESVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPKP 61

Query: 137 NHGGGGGTDAPTLSGSGFP-EVKPTTIDVVTKQ 162
              G G TDAPTLSG   P E   +TID +T +
Sbjct: 62  GR-GAGATDAPTLSGGSVPREADVSTIDAITSK 93

[Close]

BLAST of ClCG11G018960 vs. TrEMBL
Match: E5FHZ6_ARAHY (Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea GN=LEA8-1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 73  MSNSEEQPQQQMMGKREDK--APVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN 132
           M N EE  +++       K  +  E+LLP+E SPYVKYKDLE+YKRKGYG EGH EPKP 
Sbjct: 1   MENKEENREKKTQNNESAKESSSTEELLPMEDSPYVKYKDLEDYKRKGYGTEGHQEPKPG 60

Query: 133 HGGGGGTDAPTLSGSGF-PEVKPTTIDVVTKQGL 164
             G G TDAPT SG+    E + +  + V +QG+
Sbjct: 61  R-GAGATDAPTPSGAAVSSEAELSATEAVNRQGV 93

[Close]

BLAST of ClCG11G018960 vs. TrEMBL
Match: A0A067KP57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08044 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-15
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1


Query: 73  MSNSEEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHG 132
           M +  EQ +++     E KA  E L PL+SSPY++ +DLE+YKR+GYG EGH + KPNH 
Sbjct: 1   MESGSEQMERRKAEIEEKKAMTEGL-PLQSSPYLRCQDLEDYKRQGYGTEGHRQVKPNH- 60

Query: 133 GGGGTDAPTLSGSGFPEVKP 153
           GGG TDAPTLSG+G PE  P
Sbjct: 61  GGGATDAPTLSGTGLPEGTP 78

[Close]

BLAST of ClCG11G018960 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 71.2 bits (173), Expect = 6.5e-13
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 85  MGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSG 144
           M K E+K      LPLE+SPY KY+D+E+YK+  YG  GH + KP H GGG TDAPT SG
Sbjct: 1   MSKSEEKQE----LPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH-GGGTTDAPTPSG 59

Query: 145 SGFP 149
              P
Sbjct: 61  DAAP 59

[Close]

BLAST of ClCG11G018960 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-10
Identity = 35/82 (42.68%), Postives = 45/82 (54.88%), Query Frame = 1


Query: 87  KREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLS--- 146
           ++E K    D L    +PY+ Y +LE+YK KGYGA+GH EPK    GGG TDAPT S   
Sbjct: 11  EQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGM-GGGATDAPTPSGGL 70

Query: 147 --GSGFPEVKPTTIDVVTKQGL 164
             G G      ++ D + +QG+
Sbjct: 71  GRGGGAASTDLSSTDAINRQGV 91

[Close]

BLAST of ClCG11G018960 vs. TAIR10
Match: AT2G23120.1 (AT2G23120.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 27/42 (64.29%), Postives = 27/42 (64.29%), Query Frame = 1


Query: 103 SPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSG 145
           SPY+    LE+YK K YGAEGH EP P   GGG TDAPT SG
Sbjct: 30  SPYMATGTLEDYKLKAYGAEGHQEPTPGL-GGGSTDAPTPSG 70

[Close]

BLAST of ClCG11G018960 vs. NCBI nr
Match: gi|700200373|gb|KGN55531.1| (hypothetical protein Csa_4G664380 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.5e-43
Identity = 102/164 (62.20%), Postives = 106/164 (64.63%), Query Frame = 1


Query: 1   MHRHRNRQPPPRSFFFFFFLGPLCINHRSLSILNCQFSLWLWGSEGRAGQMGAELLETHG 60
           MH HRNRQPPPRSFF                             E RAGQ GAELLETHG
Sbjct: 39  MHIHRNRQPPPRSFFL----------------------------EERAGQEGAELLETHG 98

Query: 61  HNCSLYLRVMEKMSNSEEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYG 120
           HN  LYLR+ME                  +KAPVEDLLPLESSPYVKYKDLEEYKRKGYG
Sbjct: 99  HNWFLYLRIME------------------EKAPVEDLLPLESSPYVKYKDLEEYKRKGYG 154

Query: 121 AEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI 165
            EGHL PKPN   GGGTDAPTLSGSG PEV+PTTID+VTKQGLI
Sbjct: 159 VEGHLVPKPNQ--GGGTDAPTLSGSGLPEVQPTTIDIVTKQGLI 154

[Close]

BLAST of ClCG11G018960 vs. NCBI nr
Match: gi|659105076|ref|XP_008453005.1| (PREDICTED: uncharacterized protein LOC103493838 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 1.8e-36
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 77  EEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGG 136
           EEQ Q QMMGK E+KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN   GGG
Sbjct: 2   EEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQ--GGG 61

Query: 137 TDAPTLSGSGFPEVKPTTIDVVTKQGLI 165
           TDAPTLSGSG+PEV+PTTIDVVTKQGLI
Sbjct: 62  TDAPTLSGSGYPEVQPTTIDVVTKQGLI 87

[Close]

BLAST of ClCG11G018960 vs. NCBI nr
Match: gi|720068635|ref|XP_010277173.1| (PREDICTED: uncharacterized protein LOC104611696 [Nelumbo nucifera])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 50/85 (58.82%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 73  MSNSEEQPQQQMMGKRE--DKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN 132
           MS SEEQ  ++     E  DK+P  + LP+ESSPYV Y DLE+YKR+GYG EGH EPKP 
Sbjct: 1   MSRSEEQTVRKTESAEEEKDKSPGGEELPVESSPYVNYSDLEDYKRRGYGTEGHQEPKPG 60

Query: 133 HGGGGGTDAPTLSGSGFPEVKPTTI 156
             G G TDAPTLSGSG  E K   I
Sbjct: 61  R-GAGATDAPTLSGSGLSERKVAAI 84

[Close]

BLAST of ClCG11G018960 vs. NCBI nr
Match: gi|731427493|ref|XP_010663997.1| (PREDICTED: uncharacterized protein LOC104882448 [Vitis vinifera])

HSP 1 Score: 92.4 bits (228), Expect = 7.8e-16
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1


Query: 73  MSNSEEQPQQQMMGKR--EDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN 132
           MS S EQ +++   +   E+KA     LP+ESSPY+KY DLE+YKR+GYG EGHLEPKPN
Sbjct: 1   MSKSGEQLRKKTEEEERAEEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPN 60

Query: 133 HGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGL 164
             GGGGTDAPTL+G+   +   + +D   + G+
Sbjct: 61  Q-GGGGTDAPTLAGTDLSKGPASVVDAAHRVGI 92

[Close]

BLAST of ClCG11G018960 vs. NCBI nr
Match: gi|255584906|ref|XP_002533168.1| (PREDICTED: uncharacterized protein LOC8261670 [Ricinus communis])

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1


Query: 77  EEQPQQQMMGKRED-------KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKP 136
           E++ Q+  + ++ED       K  V+ +LP++ SPY++YKDLE+YK+KGYG EGHL+PKP
Sbjct: 2   EKEGQENTIERKEDINRDQHKKESVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPKP 61

Query: 137 NHGGGGGTDAPTLSGSGFP-EVKPTTIDVVTKQ 162
              G G TDAPTLSG   P E   +TID +T +
Sbjct: 62  GR-GAGATDAPTLSGGSVPREADVSTIDAITSK 93

The following BLAST results are available for this feature:

BLAST of ClCG11G018960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Y6_CUCSA	1.0e-43	62.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664380 PE=4 SV=1	[more]
F6I6V2_VITVI	5.4e-16	51.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=...	[more]
B9T4J9_RICCO	9.2e-16	48.39	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0396800 PE=4 SV=1	[more]
E5FHZ6_ARAHY	2.1e-15	50.00	Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea GN=LEA8-...	[more]
A0A067KP57_JATCU	3.5e-15	56.25	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08044 PE=4 SV=1	[more]

BLAST of ClCG11G018960 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	6.5e-13	54.69	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	4.0e-10	42.68	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	1.1e-07	64.29	Late embryogenesis abundant protein, group 6	[more]

BLAST of ClCG11G018960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200373\|gb\|KGN55531.1\|	1.5e-43	62.20	hypothetical protein Csa_4G664380 [Cucumis sativus]	[more]
gi\|659105076\|ref\|XP_008453005.1\|	1.8e-36	89.77	PREDICTED: uncharacterized protein LOC103493838 [Cucumis melo]	[more]
gi\|720068635\|ref\|XP_010277173.1\|	2.0e-16	58.82	PREDICTED: uncharacterized protein LOC104611696 [Nelumbo nucifera]	[more]
gi\|731427493\|ref\|XP_010663997.1\|	7.8e-16	51.61	PREDICTED: uncharacterized protein LOC104882448 [Vitis vinifera]	[more]
gi\|255584906\|ref\|XP_002533168.1\|	1.3e-15	48.39	PREDICTED: uncharacterized protein LOC8261670 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G018960.1	ClCG11G018960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 93..163 score: 9.0
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 69..162 score: 3.0
None	No IPR available	PANTHER	PTHR33922:SF4	EXPRESSED PROTEIN	coord: 69..162 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G018960	Csa4G664380	Cucumber (Chinese Long) v2	cuwcgB280
ClCG11G018960	MELO3C017050	Melon (DHL92) v3.5.1	mewcgB463
ClCG11G018960	Cla023470	Watermelon (97103) v1	wcgwmB103
ClCG11G018960	Cla97C11G225080	Watermelon (97103) v2	wcgwmbB064
ClCG11G018960	Bhi09G002363	Wax gourd	wcgwgoB182
ClCG11G018960	CSPI04G27180	Wild cucumber (PI 183967)	cpiwcgB290
ClCG11G018960	Cucsa.272350	Cucumber (Gy14) v1	cgywcgB469
ClCG11G018960	CmaCh09G000300	Cucurbita maxima (Rimu)	cmawcgB017
ClCG11G018960	CmoCh01G020890	Cucurbita moschata (Rifu)	cmowcgB388
ClCG11G018960	CmoCh09G000310	Cucurbita moschata (Rifu)	cmowcgB010
ClCG11G018960	Lsi04G018320	Bottle gourd (USVL1VR-Ls)	lsiwcgB261
ClCG11G018960	Cp4.1LG02g08610	Cucurbita pepo (Zucchini)	cpewcgB491
ClCG11G018960	CsGy4G025490	Cucumber (Gy14) v2	cgybwcgB260
ClCG11G018960	MELO3C017050.2	Melon (DHL92) v3.6.1	medwcgB456
ClCG11G018960	Carg21353	Silver-seed gourd	carwcgB0349
ClCG11G018960	Carg08609	Silver-seed gourd	carwcgB0102
ClCG11G018960	CsaV3_4G037560	Cucumber (Chinese Long) v3	cucwcgB289

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G018960	Cucurbita maxima (Rimu)	cmawcgB389
ClCG11G018960	Cucumber (Chinese Long) v2	cuwcgB533
ClCG11G018960	Cucurbita pepo (Zucchini)	cpewcgB696