Carg08609 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08609
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein
Location	Cucurbita_argyrosperma_scaffold_057 : 137432 .. 137713 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAATAGCGAGGAGGAGCAGCAACAGCAGCAGCAATTGGTGCGGGAGAAGGAAGAGAAGGATTCTGTGGAAGAATTGCTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAGGAGTACAAAAGAAAAGGGTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCCAACCAGGGCGGCGGTACTGACGCACCCACCTTGTCCGGCAGCGGCTTCCCGGAGGTGAAGCCCGCCACCATTGACTTCGTCACCAACCATGGCCTTCTCTCCTGA

mRNA sequence

ATGTCGAATAGCGAGGAGGAGCAGCAACAGCAGCAGCAATTGGTGCGGGAGAAGGAAGAGAAGGATTCTGTGGAAGAATTGCTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAGGAGTACAAAAGAAAAGGGTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCCAACCAGGGCGGCGGTACTGACGCACCCACCTTGTCCGGCAGCGGCTTCCCGGAGGTGAAGCCCGCCACCATTGACTTCGTCACCAACCATGGCCTTCTCTCCTGA

Coding sequence (CDS)

ATGTCGAATAGCGAGGAGGAGCAGCAACAGCAGCAGCAATTGGTGCGGGAGAAGGAAGAGAAGGATTCTGTGGAAGAATTGCTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAGGAGTACAAAAGAAAAGGGTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCCAACCAGGGCGGCGGTACTGACGCACCCACCTTGTCCGGCAGCGGCTTCCCGGAGGTGAAGCCCGCCACCATTGACTTCGTCACCAACCATGGCCTTCTCTCCTGA

Protein sequence

MSNSEEEQQQQQQLVREKEEKDSVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPATIDFVTNHGLLS

Homology

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BLAST of Carg08609 vs. NCBI nr
Match: XP_022937316.1 (uncharacterized protein LOC111443639 [Cucurbita moschata])

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 23 SVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPAT 82
          SVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPAT
Sbjct: 23 SVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPAT 82

Query: 83 IDFVTNHGLLS 94
          IDFVTNHGLLS
Sbjct: 83 IDFVTNHGLLS 93

[Close]

BLAST of Carg08609 vs. NCBI nr
Match: XP_023535424.1 (uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 24 VEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPATI 83
          VEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPATI
Sbjct: 24 VEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPATI 83

Query: 84 DFVTNHGLLS 94
          DFVTNHGLLS
Sbjct: 84 DFVTNHGLLS 93

[Close]

BLAST of Carg08609 vs. NCBI nr
Match: XP_022135734.1 (uncharacterized protein LOC111007621 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 4.8e-27
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 23  SVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQ---GGGTDAPTLSGSGFPEVK 82
           SVEELLPLESSPYVKYKDLEEYKR+GYGAEGHLEPKPNQ   GGGTDAPTLSG+GFPEVK
Sbjct: 28  SVEELLPLESSPYVKYKDLEEYKREGYGAEGHLEPKPNQGQGGGGTDAPTLSGAGFPEVK 87

Query: 83  PATIDFVTNHGLL 93
           P+TID  TN GL+
Sbjct: 88  PSTIDVATNQGLI 100

[Close]

BLAST of Carg08609 vs. NCBI nr
Match: KGN55531.1 (hypothetical protein Csa_4G664380 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 5.3e-26
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 24  VEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPATI 83
           VE+LLPLESSPYVKYKDLEEYKRKGYG EGHL PKPNQGGGTDAPTLSGSG PEV+P TI
Sbjct: 86  VEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPEVQPTTI 145

Query: 84  DFVTNHGLL 93
           D VT  GL+
Sbjct: 146 DIVTKQGLI 154

[Close]

BLAST of Carg08609 vs. NCBI nr
Match: XP_002533168.1 (uncharacterized protein LOC8261670 [Ricinus communis] >EEF29227.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-14
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 23 SVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQG-GGTDAPTLSGSGFP-EVKP 82
          SV+++LP++ SPY++YKDLE+YK+KGYG EGHL+PKP +G G TDAPTLSG   P E   
Sbjct: 25 SVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPKPGRGAGATDAPTLSGGSVPREADV 84

Query: 83 ATIDFVTN 89
          +TID +T+
Sbjct: 85 STIDAITS 92

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BLAST of Carg08609 vs. TAIR10
Match: AT2G33690.1 (Late embryogenesis abundant protein, group 6)

HSP 1 Score: 64.7 bits (156), Expect = 3.4e-11
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 28 LPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLSGSGFP 77
          LPLE+SPY KY+D+E+YK+  YG  GH + KP  GGG TDAPT SG   P
Sbjct: 10 LPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGHGGGTTDAPTPSGDAAP 59

[Close]

BLAST of Carg08609 vs. TAIR10
Match: AT2G23110.1 (Late embryogenesis abundant protein, group 6)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 33 SPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLSG 73
          +PY+ Y +LE+YK KGYGA+GH EPK   GGG TDAPT SG
Sbjct: 27 TPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPTPSG 67

[Close]

BLAST of Carg08609 vs. TAIR10
Match: AT2G23120.1 (Late embryogenesis abundant protein, group 6)

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 33 SPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLSG 73
          SPY+    LE+YK K YGAEGH EP P  GGG TDAPT SG
Sbjct: 30 SPYMATGTLEDYKLKAYGAEGHQEPTPGLGGGSTDAPTPSG 70

[Close]

BLAST of Carg08609 vs. TrEMBL
Match: tr|A0A0A0L5Y6|A0A0A0L5Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-26
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 24  VEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGFPEVKPATI 83
           VE+LLPLESSPYVKYKDLEEYKRKGYG EGHL PKPNQGGGTDAPTLSGSG PEV+P TI
Sbjct: 86  VEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPEVQPTTI 145

Query: 84  DFVTNHGLL 93
           D VT  GL+
Sbjct: 146 DIVTKQGLI 154

[Close]

BLAST of Carg08609 vs. TrEMBL
Match: tr|B9T4J9|B9T4J9_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0396800 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 23 SVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQG-GGTDAPTLSGSGFP-EVKP 82
          SV+++LP++ SPY++YKDLE+YK+KGYG EGHL+PKP +G G TDAPTLSG   P E   
Sbjct: 25 SVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPKPGRGAGATDAPTLSGGSVPREADV 84

Query: 83 ATIDFVTN 89
          +TID +T+
Sbjct: 85 STIDAITS 92

[Close]

BLAST of Carg08609 vs. TrEMBL
Match: tr|F6I6V2|F6I6V2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0122g00820 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.9e-14
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 28 LPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQ-GGGTDAPTLSGSGFPEVKPATIDFV 87
          LP+ESSPY+KY DLE+YKR+GYG EGHLEPKPNQ GGGTDAPTL+G+   +   + +D  
Sbjct: 28 LPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGGTDAPTLAGTDLSKGPASVVDAA 87

Query: 88 TNHGL 92
             G+
Sbjct: 88 HRVGI 92

[Close]

BLAST of Carg08609 vs. TrEMBL
Match: tr|A0A2R6PAW1|A0A2R6PAW1_ACTCH (mRNA cap guanine-N7 methyltransferase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc30967 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.0e-14
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 26 ELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLSGSGFPEVKPATID 85
          E LP+E+SPY +YKD+E+YKR+GYG +GH EPK  +GGG TDAPT+SGS  PE K    D
Sbjct: 21 EGLPVETSPYTQYKDMEDYKRQGYGTQGHQEPKAGRGGGSTDAPTISGSAGPETKLFPTD 80

Query: 86 FVTNHGL 92
           +  HG+
Sbjct: 81 VINRHGI 87

[Close]

BLAST of Carg08609 vs. TrEMBL
Match: tr|E5FHZ6|E5FHZ6_ARAHY (Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea OX=3818 GN=LEA8-1 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-13
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 23 SVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQG-GGTDAPTLSGS 74
          S EELLP+E SPYVKYKDLE+YKRKGYG EGH EPKP +G G TDAPT SG+
Sbjct: 23 STEELLPMEDSPYVKYKDLEDYKRKGYGTEGHQEPKPGRGAGATDAPTPSGA 74

The following BLAST results are available for this feature:

BLAST of Carg08609 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937316.1	1.0e-32	100.00	uncharacterized protein LOC111443639 [Cucurbita moschata]	[more]
XP_023535424.1	2.9e-32	100.00	uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo]	[more]
XP_022135734.1	4.8e-27	86.30	uncharacterized protein LOC111007621 [Momordica charantia]	[more]
KGN55531.1	5.3e-26	85.51	hypothetical protein Csa_4G664380 [Cucumis sativus]	[more]
XP_002533168.1	2.1e-14	60.29	uncharacterized protein LOC8261670 [Ricinus communis] >EEF29227.1 conserved hypo...	[more]

BLAST of Carg08609 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	3.4e-11	60.00	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	1.2e-08	65.85	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	2.3e-07	65.85	Late embryogenesis abundant protein, group 6	[more]

BLAST of Carg08609 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08609 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5Y6\|A0A0A0L5Y6_CUCSA	3.5e-26	85.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1	[more]
tr\|B9T4J9\|B9T4J9_RICCO	1.4e-14	60.29	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0396800 PE=4 SV=1	[more]
tr\|F6I6V2\|F6I6V2_VITVI	6.9e-14	61.54	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0122g00820 PE=4 SV=...	[more]
tr\|A0A2R6PAW1\|A0A2R6PAW1_ACTCH	9.0e-14	58.21	mRNA cap guanine-N7 methyltransferase OS=Actinidia chinensis var. chinensis OX=1...	[more]
tr\|E5FHZ6\|E5FHZ6_ARAHY	3.4e-13	76.92	Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea OX=3818 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08609-RA	Carg08609-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..79
None	No IPR available	PANTHER	PTHR33922:SF9	EXPRESSED PROTEIN-RELATED	coord: 6..84
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 6..84
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 20..90 e-value: 5.6E-28 score: 96.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08609	Cla023470	Watermelon (97103) v1	carwmB0104
Carg08609	Csa4G664380	Cucumber (Chinese Long) v2	carcuB0113
Carg08609	MELO3C017050	Melon (DHL92) v3.5.1	carmeB0107
Carg08609	ClCG11G018960	Watermelon (Charleston Gray)	carwcgB0102
Carg08609	CSPI04G27180	Wild cucumber (PI 183967)	carcpiB0118
Carg08609	Cucsa.272350	Cucumber (Gy14) v1	carcgyB0125
Carg08609	CmaCh09G000300	Cucurbita maxima (Rimu)	carcmaB0134
Carg08609	CmoCh01G020890	Cucurbita moschata (Rifu)	carcmoB0146
Carg08609	CmoCh09G000310	Cucurbita moschata (Rifu)	carcmoB0144
Carg08609	Lsi04G018320	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08609	Cp4.1LG02g08610	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08609	CsGy4G025490	Cucumber (Gy14) v2	carcgybB0113
Carg08609	MELO3C017050.2	Melon (DHL92) v3.6.1	carmedB0109
Carg08609	CsaV3_4G037560	Cucumber (Chinese Long) v3	carcucB0122
Carg08609	Cla97C11G225090	Watermelon (97103) v2	carwmbB0106
Carg08609	Bhi09G002363	Wax gourd	carwgoB0119

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08609	Carg21353	Silver-seed gourd	carcarB120

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08609	Cucurbita maxima (Rimu)	carcmaB0136
Carg08609	Cucurbita pepo (Zucchini)	carcpeB0154