MELO3C016195 (gene) Melon (DHL92) v3.5.1

NameMELO3C016195
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionJasmonate ZIM domain protein f
Locationchr7 : 20516246 .. 20517135 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAACAAAAGCTAAAGCTAAAGGAATTGTATTTGGAGATTGGCAAATGGGTAGGGAGTTCAGTTTGGAGCTTGGTCTTTGGCCATCTGCTTCAGAACCAACCTTCCAGTTCTCTGCAATTCCCATGTGAGAGATAATTTCTTCTACTTCTTCTTTTCTACTTTCTTGTTTGTTTAAACATTCATGGAAAGTGGAATTTGGATTTTGTTGTTTATGAATGTAGGATGGCTTTGCCATTTACTTTGAATCATCATCAGCAGCAGCAACAGATCATGGTTTTCTATAATGGAGCACTTTCCCTCTGTGACTTCACTGAACTTCAGGTTGGTGATCAAATTAACCCTTTTTTTTTTTTTCCTCTATGTAACCAACAAGATGAGAATAAAATCGAAGAAGAAAAGTTTGATTGGATACCGGTCGTTTGAATTTGATATTGAAAAGGTTTTTAACCTAATCTTCATAACGTATTCAAACTTCTAGGACATTTAAGATGCAATGATGAATGTAGATATGAAGAACAAACTAATACTTCAACGTTTTGAGAGATTTGACGAATCTAACATTTTGTTTTACAATGTTTGCAGGCAAGAGCCATATTATGGATTGGAAGCCAAGAGAGAAGTAGAAATGTGAGATGTAGGAATCCAGAATGGTTGAATATGCAAATGTTGAAGAGTGGGAATGGGAATGGGAACGCAGGTTTCTCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAGATGAGAAGAATTCGAACAATGTCTCCGTATCACAAACTGTAATGAACAAACCATTTATCCAATTCAAACAATGAATCAAACGCTTCTCATTTGCACCATGATTCCACAAACATTTTTGTATTGTTGAACAGAAATAAGACAAG

mRNA sequence

ACAAAACAAAAGCTAAAGCTAAAGGAATTGTATTTGGAGATTGGCAAATGGGTAGGGAGTTCAGTTTGGAGCTTGGTCTTTGGCCATCTGCTTCAGAACCAACCTTCCAGTTCTCTGCAATTCCCATGATGGCTTTGCCATTTACTTTGAATCATCATCAGCAGCAGCAACAGATCATGGTTTTCTATAATGGAGCACTTTCCCTCTGTGACTTCACTGAACTTCAGGCAAGAGCCATATTATGGATTGGAAGCCAAGAGAGAAGTAGAAATGTGAGATGTAGGAATCCAGAATGGTTGAATATGCAAATGTTGAAGAGTGGGAATGGGAATGGGAACGCAGGTTTCTCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAGATGAGAAGAATTCGAACAATGTCTCCGTATCACAAACTGTAATGAACAAACCATTTATCCAATTCAAACAATGAATCAAACGCTTCTCATTTGCACCATGATTCCACAAACATTTTTGTATTGTTGAACAGAAATAAGACAAG

Coding sequence (CDS)

ATGGGTAGGGAGTTCAGTTTGGAGCTTGGTCTTTGGCCATCTGCTTCAGAACCAACCTTCCAGTTCTCTGCAATTCCCATGATGGCTTTGCCATTTACTTTGAATCATCATCAGCAGCAGCAACAGATCATGGTTTTCTATAATGGAGCACTTTCCCTCTGTGACTTCACTGAACTTCAGGCAAGAGCCATATTATGGATTGGAAGCCAAGAGAGAAGTAGAAATGTGAGATGTAGGAATCCAGAATGGTTGAATATGCAAATGTTGAAGAGTGGGAATGGGAATGGGAACGCAGGTTTCTCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAGATGAGAAGAATTCGAACAATGTCTCCGTATCACAAACTGTAA

Protein sequence

MGREFSLELGLWPSASEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFTELQARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMRRIRTMSPYHKL*
BLAST of MELO3C016195 vs. Swiss-Prot
Match: TIF5A_ARATH (Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 36/90 (40.00%), Postives = 48/90 (53.33%), Query Frame = 1

Query: 37  HQQQQQIMVFYNGALSLC-DFTELQARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGN 96
           +++ Q+I +FYNG +    D T LQAR+I+ I S+E          +  N       N  
Sbjct: 40  NEESQRITIFYNGKMCFSSDVTHLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQL 99

Query: 97  GNAGFSIKKSLQRFLQRRKMRRIRTMSPYH 126
            N   S+KKSLQ FLQ+RK+ RI+  SPYH
Sbjct: 100 PNPKASMKKSLQSFLQKRKI-RIQATSPYH 128

BLAST of MELO3C016195 vs. TrEMBL
Match: A0A0A0KXG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G062400 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.0e-62
Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 1

Query: 1   MGREFSLELGLWPS--ASEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFTE 60
           MGREFSLELGLWPS  ASE TFQFSAIPMM LPFTL+HHQQQQQIMVFYNGALS+CDFTE
Sbjct: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60

Query: 61  LQARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMRRI 120
           LQARAI+W+GSQERS NVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQ+FLQRRKMRRI
Sbjct: 61  LQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRI 120

Query: 121 RTMSPYHKL 128
           RTMSPYHKL
Sbjct: 121 RTMSPYHKL 129

BLAST of MELO3C016195 vs. TrEMBL
Match: A0A0D2Q6C4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G092400 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-12
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = 1

Query: 1   MGREFSLELGLWPSASEPTFQFSAIP-MMALPFTLNHHQQQQQIMVFYNGALSLCDFTEL 60
           M R+ +LEL L+PS   P  + + +     +P       QQQQ+ +FYNG + +CD TEL
Sbjct: 1   MRRKCNLELELFPSRIFPGHRQNMVEESKRIP-----QNQQQQLTIFYNGRVCVCDVTEL 60

Query: 61  QARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNG-----NGNAGFSIKKSLQRFLQRRK 120
           QARAIL   ++E    ++       +     S        + NAG S+KKSLQRFLQ+RK
Sbjct: 61  QARAILMRANREADERIKTPTGSEPDSPTSSSSTSPSRLCSPNAGLSMKKSLQRFLQKRK 120

Query: 121 MRRIRTMSPYH 126
             RI+  SPYH
Sbjct: 121 -NRIQATSPYH 125

BLAST of MELO3C016195 vs. TrEMBL
Match: B9HDF1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02410g PE=4 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = 1

Query: 1   MGREFSLELGLWPSASEPTFQFSAIPMMALPFTLNHHQ-------QQQQIMVFYNGALSL 60
           M R+ +L+L L P A          P  +LP   +H         +QQ + +FYNG +S+
Sbjct: 1   MRRDSNLDLCLSPMA----------PSSSLPSASSHQNLMDEPAMRQQHLTIFYNGRISV 60

Query: 61  CDFTELQARAILWIGS---QERSRNVRCRN-PEWLNMQMLKSGNGNGNAGFSIKKSLQRF 120
           CD TE QARAI+W+ S   +ERS   R    P+ L+ Q+      +   G S+K+SLQRF
Sbjct: 61  CDVTEFQARAIIWLASREKEERSNTARSNQAPKPLHSQL------HSPPGLSLKRSLQRF 120

Query: 121 LQRRKMRRIRTMSPYHK 127
           LQ+RK +R   +SPY +
Sbjct: 121 LQKRK-KRAEAISPYRQ 120

BLAST of MELO3C016195 vs. TrEMBL
Match: I3WTA7_NICAT (Jasmonate ZIM domain protein j OS=Nicotiana attenuata PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-11
Identity = 48/137 (35.04%), Postives = 77/137 (56.20%), Query Frame = 1

Query: 1   MGREFSLELGLWPSASEPTFQFSAIPMMALPFTLNHHQQQ-------QQIMVFYNGALSL 60
           M +  +LEL L P    P+F FS        F++N   ++       QQ+ +FYNG L +
Sbjct: 1   MRKNCNLELRLMP----PSFSFSPKSCTTPYFSMNREDKENTEEKEPQQLTIFYNGKLVV 60

Query: 61  CDFTELQARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNG----NGNAGFSIKKSLQRF 120
            D TELQA+AI+++ S+E  + ++ R+P   +   +   +     +  +  S+K+SLQRF
Sbjct: 61  SDATELQAKAIIYLASREMEKKIKIRSPISESSSPISEPSSPLLQSPASDISMKRSLQRF 120

Query: 121 LQRRKMRRIRTMSPYHK 127
           LQ+RK  RI+  SPYH+
Sbjct: 121 LQKRK-NRIQATSPYHR 132

BLAST of MELO3C016195 vs. TrEMBL
Match: A5AT04_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g03790 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.9e-11
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1

Query: 38  QQQQQIMVFYNGALSLCDFTELQARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGNGN 97
           QQQQQ+ +FYNG + +CD TELQARAIL + S+E     R           L S   +  
Sbjct: 41  QQQQQLTIFYNGRICVCDVTELQARAILLLASREMEEKTRTPTASDATSPSLHSQLYSA- 100

Query: 98  AGFSIKKSLQRFLQRRKMRRIRTMSPYHK 127
            G S+K+SLQRFLQ+RK  R+   SPYH+
Sbjct: 101 TGLSMKRSLQRFLQKRK-NRMEATSPYHR 127

BLAST of MELO3C016195 vs. TAIR10
Match: AT1G30135.1 (AT1G30135.1 jasmonate-zim-domain protein 8)

HSP 1 Score: 57.4 bits (137), Expect = 7.6e-09
Identity = 36/90 (40.00%), Postives = 48/90 (53.33%), Query Frame = 1

Query: 37  HQQQQQIMVFYNGALSLC-DFTELQARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGN 96
           +++ Q+I +FYNG +    D T LQAR+I+ I S+E          +  N       N  
Sbjct: 40  NEESQRITIFYNGKMCFSSDVTHLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQL 99

Query: 97  GNAGFSIKKSLQRFLQRRKMRRIRTMSPYH 126
            N   S+KKSLQ FLQ+RK+ RI+  SPYH
Sbjct: 100 PNPKASMKKSLQSFLQKRKI-RIQATSPYH 128

BLAST of MELO3C016195 vs. NCBI nr
Match: gi|659101894|ref|XP_008451847.1| (PREDICTED: protein TIFY 5A-like [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 2.6e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1

Query: 1   MGREFSLELGLWPSASEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFTELQ 60
           MGREFSLELGLWPSASEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFTELQ
Sbjct: 1   MGREFSLELGLWPSASEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFTELQ 60

Query: 61  ARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMRRIRT 120
           ARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMRRIRT
Sbjct: 61  ARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMRRIRT 120

Query: 121 MSPYHKL 128
           MSPYHKL
Sbjct: 121 MSPYHKL 127

BLAST of MELO3C016195 vs. NCBI nr
Match: gi|449460082|ref|XP_004147775.1| (PREDICTED: protein TIFY 5A-like [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 4.3e-62
Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 1

Query: 1   MGREFSLELGLWPS--ASEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFTE 60
           MGREFSLELGLWPS  ASE TFQFSAIPMM LPFTL+HHQQQQQIMVFYNGALS+CDFTE
Sbjct: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60

Query: 61  LQARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMRRI 120
           LQARAI+W+GSQERS NVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQ+FLQRRKMRRI
Sbjct: 61  LQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRI 120

Query: 121 RTMSPYHKL 128
           RTMSPYHKL
Sbjct: 121 RTMSPYHKL 129

BLAST of MELO3C016195 vs. NCBI nr
Match: gi|823171389|ref|XP_012484787.1| (PREDICTED: protein TIFY 5A-like [Gossypium raimondii])

HSP 1 Score: 78.6 bits (192), Expect = 9.0e-12
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = 1

Query: 1   MGREFSLELGLWPSASEPTFQFSAIP-MMALPFTLNHHQQQQQIMVFYNGALSLCDFTEL 60
           M R+ +LEL L+PS   P  + + +     +P       QQQQ+ +FYNG + +CD TEL
Sbjct: 1   MRRKCNLELELFPSRIFPGHRQNMVEESKRIP-----QNQQQQLTIFYNGRVCVCDVTEL 60

Query: 61  QARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNG-----NGNAGFSIKKSLQRFLQRRK 120
           QARAIL   ++E    ++       +     S        + NAG S+KKSLQRFLQ+RK
Sbjct: 61  QARAILMRANREADERIKTPTGSEPDSPTSSSSTSPSRLCSPNAGLSMKKSLQRFLQKRK 120

Query: 121 MRRIRTMSPYH 126
             RI+  SPYH
Sbjct: 121 -NRIQATSPYH 125

BLAST of MELO3C016195 vs. NCBI nr
Match: gi|566174097|ref|XP_002307919.2| (hypothetical protein POPTR_0006s02410g [Populus trichocarpa])

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = 1

Query: 1   MGREFSLELGLWPSASEPTFQFSAIPMMALPFTLNHHQ-------QQQQIMVFYNGALSL 60
           M R+ +L+L L P A          P  +LP   +H         +QQ + +FYNG +S+
Sbjct: 1   MRRDSNLDLCLSPMA----------PSSSLPSASSHQNLMDEPAMRQQHLTIFYNGRISV 60

Query: 61  CDFTELQARAILWIGS---QERSRNVRCRN-PEWLNMQMLKSGNGNGNAGFSIKKSLQRF 120
           CD TE QARAI+W+ S   +ERS   R    P+ L+ Q+      +   G S+K+SLQRF
Sbjct: 61  CDVTEFQARAIIWLASREKEERSNTARSNQAPKPLHSQL------HSPPGLSLKRSLQRF 120

Query: 121 LQRRKMRRIRTMSPYHK 127
           LQ+RK +R   +SPY +
Sbjct: 121 LQKRK-KRAEAISPYRQ 120

BLAST of MELO3C016195 vs. NCBI nr
Match: gi|659078241|ref|XP_008439622.1| (PREDICTED: protein TIFY 5A [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 1

Query: 1   MGREFSLELGLWPSASEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFTELQ 60
           M R ++LEL L P+ S      +++     P T     Q QQ+ +FYNG + +CD TELQ
Sbjct: 10  MRRNYNLELRLSPTYSSAAAATASVSGNPSP-TAYGSPQSQQLTIFYNGRICVCDVTELQ 69

Query: 61  ARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMRRIRT 120
           ARAIL + ++E   N     P  + +Q           G S+KKSLQRFLQ+RK  R++ 
Sbjct: 70  ARAILKLATREMEENGLSETPSPM-LQQSPPPRTPTTPGLSMKKSLQRFLQKRK-HRVQA 129

Query: 121 MSPYH 126
            SPY+
Sbjct: 130 TSPYN 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TIF5A_ARATH1.3e-0740.00Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KXG2_CUCSA3.0e-6292.25Uncharacterized protein OS=Cucumis sativus GN=Csa_4G062400 PE=4 SV=1[more]
A0A0D2Q6C4_GOSRA6.3e-1239.69Uncharacterized protein OS=Gossypium raimondii GN=B456_006G092400 PE=4 SV=1[more]
B9HDF1_POPTR1.4e-1137.96Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02410g PE=4 SV=2[more]
I3WTA7_NICAT3.1e-1135.04Jasmonate ZIM domain protein j OS=Nicotiana attenuata PE=2 SV=1[more]
A5AT04_VITVI6.9e-1147.19Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g03790 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT1G30135.17.6e-0940.00 jasmonate-zim-domain protein 8[more]
Match NameE-valueIdentityDescription
gi|659101894|ref|XP_008451847.1|2.6e-67100.00PREDICTED: protein TIFY 5A-like [Cucumis melo][more]
gi|449460082|ref|XP_004147775.1|4.3e-6292.25PREDICTED: protein TIFY 5A-like [Cucumis sativus][more]
gi|823171389|ref|XP_012484787.1|9.0e-1239.69PREDICTED: protein TIFY 5A-like [Gossypium raimondii][more]
gi|566174097|ref|XP_002307919.2|2.0e-1137.96hypothetical protein POPTR_0006s02410g [Populus trichocarpa][more]
gi|659078241|ref|XP_008439622.1|2.0e-1139.20PREDICTED: protein TIFY 5A [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010399Tify_dom
IPR018467CCT_CS
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0050794 regulation of cellular process
biological_process GO:0048583 regulation of response to stimulus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016195T1MELO3C016195T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010399Tify domainPFAMPF06200tifycoord: 38..65
score: 1.
IPR018467CO/COL/TOC1, conserved sitePFAMPF09425CCT_2coord: 103..124
score: 1.
NoneNo IPR availablePANTHERPTHR33077FAMILY NOT NAMEDcoord: 1..126
score: 8.3
NoneNo IPR availablePANTHERPTHR33077:SF17PROTEIN TIFY 5A-RELATEDcoord: 1..126
score: 8.3