CmaCh16G004820 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G004820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Jasmonate-zim-domain protein 8, putative
Location	Cma_Chr16 : 2447777 .. 2449052 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATCTTCCTTGTTATTATTCCCTTGTGATTTATGCATTACCCCCAAATTAGGCACCTTCTCTTCTTCTTGCCTAAATAAGCATCTTCCTCTCTCTCTCCCTCTCTCTCTTATATATAAAAGGTCTCATTGGAGTTCTAGAGCTAAAGGGATTGTGTATTGGAGGTTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTGGGCTGTGGCCATCTTCTTCTGTTTCAGAGACAAACTTCCAATTCTCTGCAATTCCCTCCATGTGAGAGAGAAGTTCTTGTTCTTGTTCTTGTTCATCATTTTCTTGTTTGTTTAAAACTTACATGGAAATTGGAATTTGGGTTTGTGTTTATGGATGTAGGATGGCTATGCCATTTACTTTGAACCAACAGCAGCAGATCATGGTGTTCTATAATGGAACACTTTCCCTCTGTGACTTTACTGAGCTCCAGGTAATTGCTCATTCCCATCTACTTTCTTTTCATTGTAAAACTCATATGCTTACTTACCCTAACTCTTGTAATAGTGTAAAGGGTTTAGAAACTCTAAAAGGGATTCGAAGGCTTTTTCTAAAAGATGCCATTAAAAAAAAAAAAGTCATACCGAACTCACTTTAGAATCCGAGCATCTGTTAGTAATAGTTCAGTGGTCGAAGTCCACTTCGTGGCGTGCCTACATTCAAGAGATAGTGATCAGTGAAGATAATAGAGAGTTAATGAACAATGTTTATTTTGGGTACACAACATTGTAGGCAAGAGCCATACTATGGGTAGCAAGCCGAGAGAGGAGTAGCAACTCGAGATGGACCAACCCAGAATGGTTGAGTCTGCTGCAAATGCCAAAGAGTGGGAGTGGGAATGGGAATGGGAATGGGAATGGGAATGCAGGTTTCCCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAAGCAAGAAGAATTCGATCAATGTCTCCATATCACAAATTGTAATAACCAAACCGCTTACCTGATTCAAGCGAAGTTTGAGCCTCCCAACATCATCAAACAATCCATCGATCAATCAATCAATCAAAAACTCTTCATTTGTACTCTTATTCTACTTACATTCTTGTATTGTTGAATGGAAATAAGCAAAAAAAGTACTACGAGAAAATAATTCGTTTCGAACGTGTAAATGAAAACACAATAGCCCCGAGTTACAGTGCAAAAGAAACATCTATCAGGACACGACCTGATTGAAACTAATCTCTGGAATGAGAATCTGCATCTTTTGTTCTGAAGCATTTGAC

mRNA sequence

TTTTATCTTCCTTGTTATTATTCCCTTGTGATTTATGCATTACCCCCAAATTAGGCACCTTCTCTTCTTCTTGCCTAAATAAGCATCTTCCTCTCTCTCTCCCTCTCTCTCTTATATATAAAAGGTCTCATTGGAGTTCTAGAGCTAAAGGGATTGTGTATTGGAGGTTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTGGGCTGTGGCCATCTTCTTCTGTTTCAGAGACAAACTTCCAATTCTCTGCAATTCCCTCCATGATGGCTATGCCATTTACTTTGAACCAACAGCAGCAGATCATGGTGTTCTATAATGGAACACTTTCCCTCTGTGACTTTACTGAGCTCCAGGCAAGAGCCATACTATGGGTAGCAAGCCGAGAGAGGAGTAGCAACTCGAGATGGACCAACCCAGAATGGTTGAGTCTGCTGCAAATGCCAAAGAGTGGGAGTGGGAATGGGAATGGGAATGGGAATGGGAATGCAGGTTTCCCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAAGCAAGAAGAATTCGATCAATGTCTCCATATCACAAATTGTAATAACCAAACCGCTTACCTGATTCAAGCGAAGTTTGAGCCTCCCAACATCATCAAACAATCCATCGATCAATCAATCAATCAAAAACTCTTCATTTGTACTCTTATTCTACTTACATTCTTGTATTGTTGAATGGAAATAAGCAAAAAAAGTACTACGAGAAAATAATTCGTTTCGAACGTGTAAATGAAAACACAATAGCCCCGAGTTACAGTGCAAAAGAAACATCTATCAGGACACGACCTGATTGAAACTAATCTCTGGAATGAGAATCTGCATCTTTTGTTCTGAAGCATTTGAC

Coding sequence (CDS)

ATGGGAAGGGAGTTCAGTTTGGAGCTTGGGCTGTGGCCATCTTCTTCTGTTTCAGAGACAAACTTCCAATTCTCTGCAATTCCCTCCATGATGGCTATGCCATTTACTTTGAACCAACAGCAGCAGATCATGGTGTTCTATAATGGAACACTTTCCCTCTGTGACTTTACTGAGCTCCAGGCAAGAGCCATACTATGGGTAGCAAGCCGAGAGAGGAGTAGCAACTCGAGATGGACCAACCCAGAATGGTTGAGTCTGCTGCAAATGCCAAAGAGTGGGAGTGGGAATGGGAATGGGAATGGGAATGGGAATGCAGGTTTCCCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAAGCAAGAAGAATTCGATCAATGTCTCCATATCACAAATTGTAA

Protein sequence

MGREFSLELGLWPSSSVSETNFQFSAIPSMMAMPFTLNQQQQIMVFYNGTLSLCDFTELQARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFLQRRKARRIRSMSPYHKL

Homology

[Close]

BLAST of CmaCh16G004820 vs. Swiss-Prot
Match: TIF5A_ARATH (Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-08
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 7   LELGLWPSSSVSETNFQFSAIPSMMA-MPFTLNQQQQIMVFYNGTLSLC-DFTELQARAI 66
           LEL L+P+S  S+++   S + S  +  P    + Q+I +FYNG +    D T LQAR+I
Sbjct: 9   LELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQARSI 68

Query: 67  LWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFLQRRKARR 126
           + +ASRE  + S     +       P + S + + N   N    +KKSLQ FLQ+RK  R
Sbjct: 69  ISIASREMKTKSSSNGSD-------PPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKI-R 128

Query: 127 IRSMSPYH 133
           I++ SPYH
Sbjct: 129 IQATSPYH 128

[Close]

BLAST of CmaCh16G004820 vs. TrEMBL
Match: A0A0A0KXG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G062400 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.1e-46
Identity = 104/137 (75.91%), Postives = 114/137 (83.21%), Query Frame = 1


Query: 1   MGREFSLELGLWPSSSVSETNFQFSAIPSMMAMPFTLN---QQQQIMVFYNGTLSLCDFT 60
           MGREFSLELGLWPSSS SE+ FQFSAIP MM +PFTL+   QQQQIMVFYNG LS+CDFT
Sbjct: 1   MGREFSLELGLWPSSSASESTFQFSAIP-MMTLPFTLSHHQQQQQIMVFYNGALSICDFT 60

Query: 61  ELQARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFL 120
           ELQARAI+WV S+ERS N R  NPEWL+ +QM KS      GNGNGNAGF IKKSLQ+FL
Sbjct: 61  ELQARAIIWVGSQERSGNVRCRNPEWLN-MQMLKS------GNGNGNAGFSIKKSLQKFL 120

Query: 121 QRRKARRIRSMSPYHKL 135
           QRRK RRIR+MSPYHKL
Sbjct: 121 QRRKMRRIRTMSPYHKL 129

[Close]

BLAST of CmaCh16G004820 vs. TrEMBL
Match: A0A0D2Q6C4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G092400 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1


Query: 1   MGREFSLELGLWPSSSVSETNFQFSAIPSMMAMPFTLNQQQQIMVFYNGTLSLCDFTELQ 60
           M R+ +LEL L+PS        + + +     +P   NQQQQ+ +FYNG + +CD TELQ
Sbjct: 1   MRRKCNLELELFPSRIFP--GHRQNMVEESKRIP--QNQQQQLTIFYNGRVCVCDVTELQ 60

Query: 61  ARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFLQRR 120
           ARAIL  A+RE  ++ R   P          S S + +   + NAG  +KKSLQRFLQ+R
Sbjct: 61  ARAILMRANRE--ADERIKTPTGSEPDSPTSSSSTSPSRLCSPNAGLSMKKSLQRFLQKR 120

Query: 121 KARRIRSMSPYH 133
           K  RI++ SPYH
Sbjct: 121 K-NRIQATSPYH 125

[Close]

BLAST of CmaCh16G004820 vs. TrEMBL
Match: A0A067GS33_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046141mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 1


Query: 1   MGREFSLELGLWP-SSSVSETNFQFSA-----IPSMMAMPFTLNQQQQIMVFYNGTLSLC 60
           M R ++LEL L P S S+S  +F  +A     +    +     NQQQQ+ +FYNG + +C
Sbjct: 1   MRRNYNLELRLLPYSGSLSSEDFSLAAGYGHNLTMGESSVSPQNQQQQLTIFYNGQVCIC 60

Query: 61  DFTELQARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQ 120
           D TE QA+AIL +ASRE    S   NPE  S L  P             N+G  +K+SLQ
Sbjct: 61  DVTEFQAKAILLLASREMEPASP-ANPE--SQLYSP-------------NSGLSMKRSLQ 120

Query: 121 RFLQRRKARRIRSMSPY 132
           RFLQ+RK R + + SPY
Sbjct: 121 RFLQKRKHRSL-ATSPY 120

[Close]

BLAST of CmaCh16G004820 vs. TrEMBL
Match: A0A0D2UNW8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G045300 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-11
Identity = 56/140 (40.00%), Postives = 76/140 (54.29%), Query Frame = 1


Query: 1   MGREFSLELGLWPSS-SVSETNFQFSAIPSMMAMPFTLNQQQQIMVFYNGTLSLCDFTEL 60
           M R  +LEL L PSS S  +   + S  P         NQQQQ+ +FYNG + +CD TE+
Sbjct: 1   MRRNCNLELRLHPSSYSGGDRVEESSENPE--------NQQQQLTIFYNGRVCVCDVTEI 60

Query: 61  QARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGN-------GNGNGNAGFPIKKS 120
           QARAIL +A+RE               L+ P+SGSG  +        + N      +K+S
Sbjct: 61  QARAILMIANRETDER-----------LRTPRSGSGPASPTVHSQINSPNNGLSTSMKRS 120

Query: 121 LQRFLQRRKARRIRSMSPYH 133
           LQ+FLQ+RK  RI++ SPYH
Sbjct: 121 LQQFLQKRK-NRIQATSPYH 120

[Close]

BLAST of CmaCh16G004820 vs. TrEMBL
Match: A0A0B0PD22_GOSAR (Protein TIFY 5A-like protein OS=Gossypium arboreum GN=F383_27488 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 1   MGREFSLELGLWPSSSVSETNFQFSAIPSMMAMPFTLNQQQQIMVFYNGTLSLCDFTELQ 60
           M R  +LEL L PSS  S+++     +   +  P T  QQQQ+ +FYNG + + D TELQ
Sbjct: 1   MRRNCNLELRLLPSSYPSDSH---DMMEERIESPET--QQQQLTIFYNGRVCVSDVTELQ 60

Query: 61  ARAILWVASRER----SSNSRW--TNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQ 120
           A+AIL +A+RER     S + W   +P   S ++ P             N    +K+SLQ
Sbjct: 61  AKAILMLANRERDERMKSPTGWEPVSPTLKSQVKCP-------------NTALSMKRSLQ 119

Query: 121 RFLQRRKARRIRSMSPYH 133
           RFLQ+RK  RI++ SPYH
Sbjct: 121 RFLQKRKT-RIQATSPYH 119

[Close]

BLAST of CmaCh16G004820 vs. TAIR10
Match: AT1G30135.1 (AT1G30135.1 jasmonate-zim-domain protein 8)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-09
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 7   LELGLWPSSSVSETNFQFSAIPSMMA-MPFTLNQQQQIMVFYNGTLSLC-DFTELQARAI 66
           LEL L+P+S  S+++   S + S  +  P    + Q+I +FYNG +    D T LQAR+I
Sbjct: 9   LELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQARSI 68

Query: 67  LWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFLQRRKARR 126
           + +ASRE  + S     +       P + S + + N   N    +KKSLQ FLQ+RK  R
Sbjct: 69  ISIASREMKTKSSSNGSD-------PPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKI-R 128

Query: 127 IRSMSPYH 133
           I++ SPYH
Sbjct: 129 IQATSPYH 128

[Close]

BLAST of CmaCh16G004820 vs. NCBI nr
Match: gi|449460082|ref|XP_004147775.1| (PREDICTED: protein TIFY 5A-like [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 4.5e-46
Identity = 104/137 (75.91%), Postives = 114/137 (83.21%), Query Frame = 1


Query: 1   MGREFSLELGLWPSSSVSETNFQFSAIPSMMAMPFTLN---QQQQIMVFYNGTLSLCDFT 60
           MGREFSLELGLWPSSS SE+ FQFSAIP MM +PFTL+   QQQQIMVFYNG LS+CDFT
Sbjct: 1   MGREFSLELGLWPSSSASESTFQFSAIP-MMTLPFTLSHHQQQQQIMVFYNGALSICDFT 60

Query: 61  ELQARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFL 120
           ELQARAI+WV S+ERS N R  NPEWL+ +QM KS      GNGNGNAGF IKKSLQ+FL
Sbjct: 61  ELQARAIIWVGSQERSGNVRCRNPEWLN-MQMLKS------GNGNGNAGFSIKKSLQKFL 120

Query: 121 QRRKARRIRSMSPYHKL 135
           QRRK RRIR+MSPYHKL
Sbjct: 121 QRRKMRRIRTMSPYHKL 129

[Close]

BLAST of CmaCh16G004820 vs. NCBI nr
Match: gi|659101894|ref|XP_008451847.1| (PREDICTED: protein TIFY 5A-like [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 3.8e-45
Identity = 106/137 (77.37%), Postives = 113/137 (82.48%), Query Frame = 1


Query: 1   MGREFSLELGLWPSSSVSETNFQFSAIPSMMAMPFTLN---QQQQIMVFYNGTLSLCDFT 60
           MGREFSLELGLWPS+  SE  FQFSAIP MMA+PFTLN   QQQQIMVFYNG LSLCDFT
Sbjct: 1   MGREFSLELGLWPSA--SEPTFQFSAIP-MMALPFTLNHHQQQQQIMVFYNGALSLCDFT 60

Query: 61  ELQARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFL 120
           ELQARAILW+ S+ERS N R  NPEWL+ +QM KS      GNGNGNAGF IKKSLQRFL
Sbjct: 61  ELQARAILWIGSQERSRNVRCRNPEWLN-MQMLKS------GNGNGNAGFSIKKSLQRFL 120

Query: 121 QRRKARRIRSMSPYHKL 135
           QRRK RRIR+MSPYHKL
Sbjct: 121 QRRKMRRIRTMSPYHKL 127

[Close]

BLAST of CmaCh16G004820 vs. NCBI nr
Match: gi|641859512|gb|KDO78202.1| (hypothetical protein CISIN_1g046141mg [Citrus sinensis])

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-11
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 1


Query: 1   MGREFSLELGLWP-SSSVSETNFQFSA-----IPSMMAMPFTLNQQQQIMVFYNGTLSLC 60
           M R ++LEL L P S S+S  +F  +A     +    +     NQQQQ+ +FYNG + +C
Sbjct: 1   MRRNYNLELRLLPYSGSLSSEDFSLAAGYGHNLTMGESSVSPQNQQQQLTIFYNGQVCIC 60

Query: 61  DFTELQARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQ 120
           D TE QA+AIL +ASRE    S   NPE  S L  P             N+G  +K+SLQ
Sbjct: 61  DVTEFQAKAILLLASREMEPASP-ANPE--SQLYSP-------------NSGLSMKRSLQ 120

Query: 121 RFLQRRKARRIRSMSPY 132
           RFLQ+RK R + + SPY
Sbjct: 121 RFLQKRKHRSL-ATSPY 120

[Close]

BLAST of CmaCh16G004820 vs. NCBI nr
Match: gi|823171389|ref|XP_012484787.1| (PREDICTED: protein TIFY 5A-like [Gossypium raimondii])

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-11
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1


Query: 1   MGREFSLELGLWPSSSVSETNFQFSAIPSMMAMPFTLNQQQQIMVFYNGTLSLCDFTELQ 60
           M R+ +LEL L+PS        + + +     +P   NQQQQ+ +FYNG + +CD TELQ
Sbjct: 1   MRRKCNLELELFPSRIFP--GHRQNMVEESKRIP--QNQQQQLTIFYNGRVCVCDVTELQ 60

Query: 61  ARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFLQRR 120
           ARAIL  A+RE  ++ R   P          S S + +   + NAG  +KKSLQRFLQ+R
Sbjct: 61  ARAILMRANRE--ADERIKTPTGSEPDSPTSSSSTSPSRLCSPNAGLSMKKSLQRFLQKR 120

Query: 121 KARRIRSMSPYH 133
           K  RI++ SPYH
Sbjct: 121 K-NRIQATSPYH 125

[Close]

BLAST of CmaCh16G004820 vs. NCBI nr
Match: gi|568826178|ref|XP_006467450.1| (PREDICTED: protein TIFY 5A-like [Citrus sinensis])

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-11
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 1


Query: 1   MGREFSLELGLWP-SSSVSETNFQFSA-----IPSMMAMPFTLNQQQQIMVFYNGTLSLC 60
           M R ++LEL L P S S+S  +F  +A     +    +     NQQQQ+ +FYNG + +C
Sbjct: 1   MRRNYNLELRLLPYSDSLSSEDFSLAAGYGHNLTMGESSVSPQNQQQQLTIFYNGQVCIC 60

Query: 61  DFTELQARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQ 120
           D TE QA+AIL +ASRE    S   NPE  S L  P             N+G  +K+SLQ
Sbjct: 61  DVTEFQAKAILLLASREMEPASP-ANPE--SQLYSP-------------NSGLSMKRSLQ 120

Query: 121 RFLQRRKARRIRSMSPY 132
           RFLQ+RK R + + SPY
Sbjct: 121 RFLQKRKHRSL-ATSPY 120

The following BLAST results are available for this feature:

BLAST of CmaCh16G004820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIF5A_ARATH	2.8e-08	37.50	Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1	[more]

BLAST of CmaCh16G004820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXG2_CUCSA	3.1e-46	75.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G062400 PE=4 SV=1	[more]
A0A0D2Q6C4_GOSRA	3.3e-11	42.42	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G092400 PE=4 SV=1	[more]
A0A067GS33_CITSI	3.3e-11	41.61	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046141mg PE=4 SV=1	[more]
A0A0D2UNW8_GOSRA	7.3e-11	40.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G045300 PE=4 SV=1	[more]
A0A0B0PD22_GOSAR	1.2e-10	39.86	Protein TIFY 5A-like protein OS=Gossypium arboreum GN=F383_27488 PE=4 SV=1	[more]

BLAST of CmaCh16G004820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30135.1	1.6e-09	37.50	jasmonate-zim-domain protein 8	[more]

BLAST of CmaCh16G004820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460082\|ref\|XP_004147775.1\|	4.5e-46	75.91	PREDICTED: protein TIFY 5A-like [Cucumis sativus]	[more]
gi\|659101894\|ref\|XP_008451847.1\|	3.8e-45	77.37	PREDICTED: protein TIFY 5A-like [Cucumis melo]	[more]
gi\|641859512\|gb\|KDO78202.1\|	4.7e-11	41.61	hypothetical protein CISIN_1g046141mg [Citrus sinensis]	[more]
gi\|823171389\|ref\|XP_012484787.1\|	4.7e-11	42.42	PREDICTED: protein TIFY 5A-like [Gossypium raimondii]	[more]
gi\|568826178\|ref\|XP_006467450.1\|	4.7e-11	41.61	PREDICTED: protein TIFY 5A-like [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010399	Tify_dom
IPR018467	CCT_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0048583	regulation of response to stimulus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004820.1	CmaCh16G004820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010399	Tify domain	PFAM	PF06200	tify	coord: 39..69 score: 8.
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	CCT_2	coord: 110..131 score: 2.
None	No IPR available	PANTHER	PTHR33077	FAMILY NOT NAMED	coord: 1..133 score: 3.3
None	No IPR available	PANTHER	PTHR33077:SF17	PROTEIN TIFY 5A-RELATED	coord: 1..133 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G004820	Cucsa.179960	Cucumber (Gy14) v1	cgycmaB0511
CmaCh16G004820	Cla005434	Watermelon (97103) v1	cmawmB308
CmaCh16G004820	Csa4G062400	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G004820	MELO3C016195	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G004820	ClCG07G010850	Watermelon (Charleston Gray)	cmawcgB300
CmaCh16G004820	CSPI04G07230	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G004820	CmoCh04G006660	Cucurbita moschata (Rifu)	cmacmoB340
CmaCh16G004820	CmoCh16G005230	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G004820	Lsi07G008060	Bottle gourd (USVL1VR-Ls)	cmalsiB325
CmaCh16G004820	Cp4.1LG14g03160	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G004820	Cp4.1LG01g01020	Cucurbita pepo (Zucchini)	cmacpeB353
CmaCh16G004820	MELO3C016195.2	Melon (DHL92) v3.6.1	cmamedB351
CmaCh16G004820	CsaV3_4G007460	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G004820	Cla97C07G137590	Watermelon (97103) v2	cmawmbB350
CmaCh16G004820	Bhi01G002389	Wax gourd	cmawgoB0437
CmaCh16G004820	CsGy4G007120	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G004820	Carg11405	Silver-seed gourd	carcmaB0924
CmaCh16G004820	Carg13126	Silver-seed gourd	carcmaB0052

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G004820	CmaCh04G006190	Cucurbita maxima (Rimu)	cmacmaB353

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G004820	Cucumber (Chinese Long) v3	cmacucB0392