Cucsa.179960 (gene) Cucumber (Gy14) v1

NameCucsa.179960
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionJasmonate ZIM domain protein f
Locationscaffold01233 : 330613 .. 331546 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTAAAGGAATTGTATTTAGAGATTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTGGTCTTTGGCCATCTTCTTCTGCTTCAGAATCAACCTTCCAATTCTCTGCAATTCCCATGTGAGAGATAATTTCTTCTTCTTCTTCCTCTTTTTGATTTTCTTGTTTGTTTAAACATTCATGGAAAGTGGAATTTGGATTTTGGTGTTTATGAATGTAGGATGACTTTGCCATTTACTTTGAGCCATCATCAGCAGCAGCAACAGATCATGGTTTTCTATAATGGAGCACTTTCCATCTGTGACTTCACTGAACTTCAGGTTGGTATTCAAATTAACCTTTTTtCCCCTATGCAACCGAAAAGATGAGATGAGAATAGAATCCACGAAGAAAAGTTTGATTGGATACTGTTCGTTTGAATTTGATAATGAAACGGTTTTTAACCTAATCTTCATAATGTATTCAAAATTCTAGGACATTTAATATGCAATGATGATTGTAGATATGAAGAATATACTAATACTTCAACGTTTGGAGAGATTTAATGAATTTAACATTATATTTTACAACGTTTGCAGGCAAGAGCCATAATATGGGTTGGAAGCCAAGAGAGAAGTGGAAATGTGAGATGTAGGAACCCAGAATGGTTGAATATGCAAATGTTAAAGAGTGGGAATGGGAATGGGAATGCAGGTTTCTCCATTAAGAAATCTCTGCAGAAATTCTTACAAAGGAGAAAGATGAGAAGAATTCGAACAATGTCTCCATATCACAAACTGTAATGAACAAAACCATTGATCCAATTCAAACGATGAATCAAACAGTTCTCAATTGCACTATGATTCTACAAACATTTTTGTATTGTTGAACGAAATAAGACAAGAAAAAGTTCCTACAAGAAAAGAATTTGTTTGTTCCTGTATTTTACACAACCCCAA

mRNA sequence

GCTAAAGGAATTGTATTTAGAGATTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTGGTCTTTGGCCATCTTCTTCTGCTTCAGAATCAACCTTCCAATTCTCTGCAATTCCCATGATGACTTTGCCATTTACTTTGAGCCATCATCAGCAGCAGCAACAGATCATGGTTTTCTATAATGGAGCACTTTCCATCTGTGACTTCACTGAACTTCAGGCAAGAGCCATAATATGGGTTGGAAGCCAAGAGAGAAGTGGAAATGTGAGATGTAGGAACCCAGAATGGTTGAATATGCAAATGTTAAAGAGTGGGAATGGGAATGGGAATGCAGGTTTCTCCATTAAGAAATCTCTGCAGAAATTCTTACAAAGGAGAAAGATGAGAAGAATTCGAACAATGTCTCCATATCACAAACTGTAATGAACAAAACCATTGATCCAATTCAAACGATGAATCAAACAGTTCTCAATTGCACTATGATTCTACAAACATTTTTGTATTGTTGAACGAAATAAGACAAGAAAAAGTTCCTACAAGAAAAGAATTTGTTTGTTCCTGTATTTTACACAACCCCAA

Coding sequence (CDS)

ATGGGAAGGGAGTTCAGTTTGGAGCTTGGTCTTTGGCCATCTTCTTCTGCTTCAGAATCAACCTTCCAATTCTCTGCAATTCCCATGATGACTTTGCCATTTACTTTGAGCCATCATCAGCAGCAGCAACAGATCATGGTTTTCTATAATGGAGCACTTTCCATCTGTGACTTCACTGAACTTCAGGCAAGAGCCATAATATGGGTTGGAAGCCAAGAGAGAAGTGGAAATGTGAGATGTAGGAACCCAGAATGGTTGAATATGCAAATGTTAAAGAGTGGGAATGGGAATGGGAATGCAGGTTTCTCCATTAAGAAATCTCTGCAGAAATTCTTACAAAGGAGAAAGATGAGAAGAATTCGAACAATGTCTCCATATCACAAACTGTAA

Protein sequence

MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTELQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRIRTMSPYHKL*
BLAST of Cucsa.179960 vs. Swiss-Prot
Match: TIF5A_ARATH (Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = 1

Query: 7   LELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSIC-DFTELQARA 66
           LEL L+P+S  S+S+   S +   T       +++ Q+I +FYNG +    D T LQAR+
Sbjct: 9   LELRLFPTSYDSDSSDTTSVVES-TSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQARS 68

Query: 67  IIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRIRTMSP 126
           II + S+E          +  N       N   N   S+KKSLQ FLQ+RK+ RI+  SP
Sbjct: 69  IISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKI-RIQATSP 128

Query: 127 YH 128
           YH
Sbjct: 129 YH 128

BLAST of Cucsa.179960 vs. TrEMBL
Match: A0A0A0KXG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G062400 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 4.8e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1

Query: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60
           MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE
Sbjct: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60

Query: 61  LQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRI 120
           LQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRI
Sbjct: 61  LQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRI 120

Query: 121 RTMSPYHKL 130
           RTMSPYHKL
Sbjct: 121 RTMSPYHKL 129

BLAST of Cucsa.179960 vs. TrEMBL
Match: A5AT04_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g03790 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 1

Query: 3   REFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTELQ 62
           R  +LEL L P ++   S      + M T   +    QQQQQ+ +FYNG + +CD TELQ
Sbjct: 4   RNCNLELRLLPPNTDYSSPQHHHNMMMETGRGSPQEQQQQQQLTIFYNGRICVCDVTELQ 63

Query: 63  ARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRIRT 122
           ARAI+ + S+E     R           L S   +   G S+K+SLQ+FLQ+RK  R+  
Sbjct: 64  ARAILLLASREMEEKTRTPTASDATSPSLHSQLYSA-TGLSMKRSLQRFLQKRK-NRMEA 123

Query: 123 MSPYHK 129
            SPYH+
Sbjct: 124 TSPYHR 127

BLAST of Cucsa.179960 vs. TrEMBL
Match: B9HDF1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02410g PE=4 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 1

Query: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60
           M R+ +L+L L P + +S      S   +M  P       +QQ + +FYNG +S+CD TE
Sbjct: 1   MRRDSNLDLCLSPMAPSSSLPSASSHQNLMDEPA-----MRQQHLTIFYNGRISVCDVTE 60

Query: 61  LQARAIIWVGS---QERSGNVRCRN-PEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRK 120
            QARAIIW+ S   +ERS   R    P+ L+ Q+      +   G S+K+SLQ+FLQ+RK
Sbjct: 61  FQARAIIWLASREKEERSNTARSNQAPKPLHSQL------HSPPGLSLKRSLQRFLQKRK 120

Query: 121 MRRIRTMSPYHK 129
            +R   +SPY +
Sbjct: 121 -KRAEAISPYRQ 120

BLAST of Cucsa.179960 vs. TrEMBL
Match: A0A0A0KI51_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523460 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.4e-11
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1

Query: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60
           M R  +LEL L P+ + + +    S  P  T         Q QQ+ +FYNG + +CD TE
Sbjct: 10  MRRNCNLELRLSPTPNPNPNPAAVSDQPSATA----DDSPQSQQLTIFYNGRICVCDVTE 69

Query: 61  LQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRI 120
           LQARAI+ + ++E   N     P  +  Q           G S+KKSLQ+FLQ+RK  R+
Sbjct: 70  LQARAILKLATREMEENGLSETPSPMLQQSSPPPRTPTTPGLSMKKSLQRFLQKRK-HRV 129

Query: 121 RTMSPYH 128
           +  SPY+
Sbjct: 130 QATSPYN 131

BLAST of Cucsa.179960 vs. TrEMBL
Match: A0A067GS33_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046141mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.0e-11
Identity = 54/130 (41.54%), Postives = 73/130 (56.15%), Query Frame = 1

Query: 1   MGREFSLELGLWP-SSSASESTFQFSAIPMMTLPF---TLSHHQQQQQIMVFYNGALSIC 60
           M R ++LEL L P S S S   F  +A     L     ++S   QQQQ+ +FYNG + IC
Sbjct: 1   MRRNYNLELRLLPYSGSLSSEDFSLAAGYGHNLTMGESSVSPQNQQQQLTIFYNGQVCIC 60

Query: 61  DFTELQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRK 120
           D TE QA+AI+ + S+E        NPE        S   + N+G S+K+SLQ+FLQ+RK
Sbjct: 61  DVTEFQAKAILLLASREME-PASPANPE--------SQLYSPNSGLSMKRSLQRFLQKRK 120

Query: 121 MRRIRTMSPY 127
            R + T SPY
Sbjct: 121 HRSLAT-SPY 120

BLAST of Cucsa.179960 vs. TAIR10
Match: AT1G30135.1 (AT1G30135.1 jasmonate-zim-domain protein 8)

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-11
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = 1

Query: 7   LELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSIC-DFTELQARA 66
           LEL L+P+S  S+S+   S +   T       +++ Q+I +FYNG +    D T LQAR+
Sbjct: 9   LELRLFPTSYDSDSSDTTSVVES-TSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQARS 68

Query: 67  IIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRIRTMSP 126
           II + S+E          +  N       N   N   S+KKSLQ FLQ+RK+ RI+  SP
Sbjct: 69  IISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKI-RIQATSP 128

Query: 127 YH 128
           YH
Sbjct: 129 YH 128

BLAST of Cucsa.179960 vs. NCBI nr
Match: gi|449460082|ref|XP_004147775.1| (PREDICTED: protein TIFY 5A-like [Cucumis sativus])

HSP 1 Score: 265.0 bits (676), Expect = 6.9e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1

Query: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60
           MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE
Sbjct: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60

Query: 61  LQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRI 120
           LQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRI
Sbjct: 61  LQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRI 120

Query: 121 RTMSPYHKL 130
           RTMSPYHKL
Sbjct: 121 RTMSPYHKL 129

BLAST of Cucsa.179960 vs. NCBI nr
Match: gi|659101894|ref|XP_008451847.1| (PREDICTED: protein TIFY 5A-like [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 4.3e-62
Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 1

Query: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60
           MGREFSLELGLWPS  ASE TFQFSAIPMM LPFTL+HHQQQQQIMVFYNGALS+CDFTE
Sbjct: 1   MGREFSLELGLWPS--ASEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFTE 60

Query: 61  LQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRI 120
           LQARAI+W+GSQERS NVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQ+FLQRRKMRRI
Sbjct: 61  LQARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMRRI 120

Query: 121 RTMSPYHKL 130
           RTMSPYHKL
Sbjct: 121 RTMSPYHKL 127

BLAST of Cucsa.179960 vs. NCBI nr
Match: gi|225443888|ref|XP_002277769.1| (PREDICTED: protein TIFY 5A [Vitis vinifera])

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 1

Query: 3   REFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTELQ 62
           R  +LEL L P ++   S      + M T   +    QQQQQ+ +FYNG + +CD TELQ
Sbjct: 4   RNCNLELRLLPPNTDYSSPQHHHNMMMETGRGSPQEQQQQQQLTIFYNGRICVCDVTELQ 63

Query: 63  ARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRRIRT 122
           ARAI+ + S+E     R           L S   +   G S+K+SLQ+FLQ+RK  R+  
Sbjct: 64  ARAILLLASREMEEKTRTPTASDATSPSLHSQLYSA-TGLSMKRSLQRFLQKRK-NRMEA 123

Query: 123 MSPYHK 129
            SPYH+
Sbjct: 124 TSPYHR 127

BLAST of Cucsa.179960 vs. NCBI nr
Match: gi|659078241|ref|XP_008439622.1| (PREDICTED: protein TIFY 5A [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 51/128 (39.84%), Postives = 73/128 (57.03%), Query Frame = 1

Query: 1   MGREFSLELGLWPS-SSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFT 60
           M R ++LEL L P+ SSA+ +T   S  P  T   +     Q QQ+ +FYNG + +CD T
Sbjct: 10  MRRNYNLELRLSPTYSSAAAATASVSGNPSPTAYGS----PQSQQLTIFYNGRICVCDVT 69

Query: 61  ELQARAIIWVGSQERSGNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMRR 120
           ELQARAI+ + ++E   N     P  + +Q           G S+KKSLQ+FLQ+RK  R
Sbjct: 70  ELQARAILKLATREMEENGLSETPSPM-LQQSPPPRTPTTPGLSMKKSLQRFLQKRK-HR 129

Query: 121 IRTMSPYH 128
           ++  SPY+
Sbjct: 130 VQATSPYN 131

BLAST of Cucsa.179960 vs. NCBI nr
Match: gi|566174097|ref|XP_002307919.2| (hypothetical protein POPTR_0006s02410g [Populus trichocarpa])

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 1

Query: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60
           M R+ +L+L L P + +S      S   +M  P       +QQ + +FYNG +S+CD TE
Sbjct: 1   MRRDSNLDLCLSPMAPSSSLPSASSHQNLMDEPA-----MRQQHLTIFYNGRISVCDVTE 60

Query: 61  LQARAIIWVGS---QERSGNVRCRN-PEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRK 120
            QARAIIW+ S   +ERS   R    P+ L+ Q+      +   G S+K+SLQ+FLQ+RK
Sbjct: 61  FQARAIIWLASREKEERSNTARSNQAPKPLHSQL------HSPPGLSLKRSLQRFLQKRK 120

Query: 121 MRRIRTMSPYHK 129
            +R   +SPY +
Sbjct: 121 -KRAEAISPYRQ 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TIF5A_ARATH1.5e-0937.70Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KXG2_CUCSA4.8e-68100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G062400 PE=4 SV=1[more]
A5AT04_VITVI1.1e-1138.89Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g03790 PE=4 SV=... [more]
B9HDF1_POPTR1.9e-1138.64Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02410g PE=4 SV=2[more]
A0A0A0KI51_CUCSA5.4e-1137.01Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523460 PE=4 SV=1[more]
A0A067GS33_CITSI7.0e-1141.54Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046141mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G30135.18.2e-1137.70 jasmonate-zim-domain protein 8[more]
Match NameE-valueIdentityDescription
gi|449460082|ref|XP_004147775.1|6.9e-68100.00PREDICTED: protein TIFY 5A-like [Cucumis sativus][more]
gi|659101894|ref|XP_008451847.1|4.3e-6292.25PREDICTED: protein TIFY 5A-like [Cucumis melo][more]
gi|225443888|ref|XP_002277769.1|1.6e-1138.89PREDICTED: protein TIFY 5A [Vitis vinifera][more]
gi|659078241|ref|XP_008439622.1|2.0e-1139.84PREDICTED: protein TIFY 5A [Cucumis melo][more]
gi|566174097|ref|XP_002307919.2|2.7e-1138.64hypothetical protein POPTR_0006s02410g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010399Tify_dom
IPR018467CCT_CS
IPR010399Tify_dom
IPR018467CCT_CS
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.179960.1Cucsa.179960.1mRNA
Cucsa.179960.2Cucsa.179960.2mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010399Tify domainPFAMPF06200tifycoord: 11..38
score: 1.
IPR018467CO/COL/TOC1, conserved sitePFAMPF09425CCT_2coord: 76..97
score: 2.
NoneNo IPR availablePANTHERPTHR33077FAMILY NOT NAMEDcoord: 11..99
score: 5.5
NoneNo IPR availablePANTHERPTHR33077:SF17PROTEIN TIFY 5A-RELATEDcoord: 11..99
score: 5.5