CmoCh04G006660 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G006660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Jasmonate-zim-domain protein 8, putative
Location	Cmo_Chr04 : 3313748 .. 3314334 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAAGAGGTAAAGGGAATTGGCATTTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTTGTCTTTGCCCATCTTCTCCTGCAATTCCCATGTGAGAGACCCCGTTTTTCTTCAGCTTCTTCTTCTTGTTTTTTTGATAACTTTCATGGAAAGTGGATTTTGGGTTTTTGTTTATGGGTGTAGGATGGCCATGCCATTGAATCATCAGAAGCAGATCATGGTTTTCAATAATGGAACAGCTTCGGTCTGTGACTTGACTGAACTCCAGGTTCATCCTTATTTCTTTTTCACTCCAACTTTTGTTTTCATATGATTCCAAGATGAACTAAATTGGATACAATGTTTGCAGGTAAGAGCCATATTAGGGATAGCAAGCCAAGAGAGGAATAGCAGCAAGAGCCAATGGTGGAGCAACCCAGAACGGTTGAGTCTGCAAATGCCAAATGGTAATGCAGGTTTCTCCATTAAGAAATCTCTTCAGAGGTTCCTACAAAGGAGGAACACCAGAAGAATTCGATCCATGTATCCGTATCACAAACCACGTACCTAATTCAAAGTTTATGCCTCCCAACCTCATCAATCA

mRNA sequence

ATGAAAAAAGAGGTAAAGGGAATTGGCATTTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTTGTCTTTGCCCATCTTCTCCTGCAATTCCCATGATGGCCATGCCATTGAATCATCAGAAGCAGATCATGGTTTTCAATAATGGAACAGCTTCGGTCTGTGACTTGACTGAACTCCAGGTAAGAGCCATATTAGGGATAGCAAGCCAAGAGAGGAATAGCAGCAAGAGCCAATGGTGGAGCAACCCAGAACGGTTGAGTCTGCAAATGCCAAATGGTAATGCAGGTTTCTCCATTAAGAAATCTCTTCAGAGGTTCCTACAAAGGAGGAACACCAGAAGAATTCGATCCATGTATCCGTATCACAAACCACGTACCTAATTCAAAGTTTATGCCTCCCAACCTCATCAATCA

Coding sequence (CDS)

ATGAAAAAAGAGGTAAAGGGAATTGGCATTTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTTGTCTTTGCCCATCTTCTCCTGCAATTCCCATGATGGCCATGCCATTGAATCATCAGAAGCAGATCATGGTTTTCAATAATGGAACAGCTTCGGTCTGTGACTTGACTGAACTCCAGGTAAGAGCCATATTAGGGATAGCAAGCCAAGAGAGGAATAGCAGCAAGAGCCAATGGTGGAGCAACCCAGAACGGTTGAGTCTGCAAATGCCAAATGGTAATGCAGGTTTCTCCATTAAGAAATCTCTTCAGAGGTTCCTACAAAGGAGGAACACCAGAAGAATTCGATCCATGTATCCGTATCACAAACCACGTACCTAA

Homology

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BLAST of CmoCh04G006660 vs. Swiss-Prot
Match: TIF5A_ARATH (Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 1


Query: 36  PLNHQKQIMVFNNGTASVC-DLTELQVRAILGIASQERNSSKSQWWSNPERLSL-----Q 95
           P    ++I +F NG      D+T LQ R+I+ IAS+E  +  S   S+P   S      Q
Sbjct: 39  PNEESQRITIFYNGKMCFSSDVTHLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQ 98

Query: 96  MPNGNAGFSIKKSLQRFLQRRNTRRIRSMYPYHKPR 126
           +PN  A  S+KKSLQ FLQ+R   RI++  PYH  R
Sbjct: 99  LPNPKA--SMKKSLQSFLQKRKI-RIQATSPYHSRR 131

[Close]

BLAST of CmoCh04G006660 vs. TrEMBL
Match: A0A0A0KXG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G062400 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-25
Identity = 76/130 (58.46%), Postives = 88/130 (67.69%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPA---------IPMMAMP--LNH---QKQIMVFNNGTASVCDLTE 72
           MGREFSLEL L PSS A         IPMM +P  L+H   Q+QIMVF NG  S+CD TE
Sbjct: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60

Query: 73  LQVRAILGIASQERNSSKSQWWSNPERLSLQM-----PNGNAGFSIKKSLQRFLQRRNTR 124
           LQ RAI+ + SQER+ +      NPE L++QM      NGNAGFSIKKSLQ+FLQRR  R
Sbjct: 61  LQARAIIWVGSQERSGNVR--CRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMR 120

[Close]

BLAST of CmoCh04G006660 vs. TrEMBL
Match: B9HDF1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02410g PE=4 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-10
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPA--IP-------MMAMPLNHQKQIMVFNNGTASVCDLTELQVRA 72
           M R+ +L+LCL P +P+  +P       +M  P   Q+ + +F NG  SVCD+TE Q RA
Sbjct: 1   MRRDSNLDLCLSPMAPSSSLPSASSHQNLMDEPAMRQQHLTIFYNGRISVCDVTEFQARA 60

Query: 73  ILGIASQERNSSKSQWWSN--PERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMYPY 124
           I+ +AS+E+    +   SN  P+ L  Q+ +   G S+K+SLQRFLQ+R  +R  ++ PY
Sbjct: 61  IIWLASREKEERSNTARSNQAPKPLHSQL-HSPPGLSLKRSLQRFLQKRK-KRAEAISPY 120

[Close]

BLAST of CmoCh04G006660 vs. TrEMBL
Match: A0A0D4D684_GOSBA (JAZ15 OS=Gossypium barbadense PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 49/120 (40.83%), Postives = 66/120 (55.00%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPAIPMMAM-------PLNHQKQIMVFNNGTASVCDLTELQVRAIL 72
           M R  +LEL L PSS       M       P   Q+Q+ +F NG   V D+TELQ +AIL
Sbjct: 1   MRRNCNLELRLLPSSYPSDSHDMMEERIESPKTQQQQLTIFYNGRVCVSDVTELQAKAIL 60

Query: 73  GIASQERN---SSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMYPYH 123
            +A++ER+    S + W      L  Q+   N   S+K+SLQRFLQ+R T RI++  PYH
Sbjct: 61  MLANRERDERMKSPTGWEPVSPTLKSQVKCPNTALSMKRSLQRFLQKRKT-RIQATSPYH 119

[Close]

BLAST of CmoCh04G006660 vs. TrEMBL
Match: A0A0B0PD22_GOSAR (Protein TIFY 5A-like protein OS=Gossypium arboreum GN=F383_27488 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-09
Identity = 49/120 (40.83%), Postives = 66/120 (55.00%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPAIPMMAM-------PLNHQKQIMVFNNGTASVCDLTELQVRAIL 72
           M R  +LEL L PSS       M       P   Q+Q+ +F NG   V D+TELQ +AIL
Sbjct: 1   MRRNCNLELRLLPSSYPSDSHDMMEERIESPETQQQQLTIFYNGRVCVSDVTELQAKAIL 60

Query: 73  GIASQERN---SSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMYPYH 123
            +A++ER+    S + W      L  Q+   N   S+K+SLQRFLQ+R T RI++  PYH
Sbjct: 61  MLANRERDERMKSPTGWEPVSPTLKSQVKCPNTALSMKRSLQRFLQKRKT-RIQATSPYH 119

[Close]

BLAST of CmoCh04G006660 vs. TrEMBL
Match: A0A0D2TQQ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G154300 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-09
Identity = 49/120 (40.83%), Postives = 66/120 (55.00%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPAIPMMAM-------PLNHQKQIMVFNNGTASVCDLTELQVRAIL 72
           M R  +LEL L PSS       M       P   Q+Q+ +F NG   V D+TELQ +AIL
Sbjct: 1   MRRNCNLELRLLPSSYPSDSHDMMEERIESPETQQQQLTIFYNGRVCVSDVTELQAKAIL 60

Query: 73  GIASQ---ERNSSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMYPYH 123
            +A++   ER  S + W      L  Q+ + N   S+K+SLQRFLQ+R T RI++  PYH
Sbjct: 61  ILANRERVERMKSPTGWEPVSPTLKSQVNSPNTSLSMKRSLQRFLQKRKT-RIQATSPYH 119

[Close]

BLAST of CmoCh04G006660 vs. TAIR10
Match: AT1G30135.1 (AT1G30135.1 jasmonate-zim-domain protein 8)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 1


Query: 36  PLNHQKQIMVFNNGTASVC-DLTELQVRAILGIASQERNSSKSQWWSNPERLSL-----Q 95
           P    ++I +F NG      D+T LQ R+I+ IAS+E  +  S   S+P   S      Q
Sbjct: 39  PNEESQRITIFYNGKMCFSSDVTHLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQ 98

Query: 96  MPNGNAGFSIKKSLQRFLQRRNTRRIRSMYPYHKPR 126
           +PN  A  S+KKSLQ FLQ+R   RI++  PYH  R
Sbjct: 99  LPNPKA--SMKKSLQSFLQKRKI-RIQATSPYHSRR 131

[Close]

BLAST of CmoCh04G006660 vs. NCBI nr
Match: gi|659101894|ref|XP_008451847.1| (PREDICTED: protein TIFY 5A-like [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-26
Identity = 81/128 (63.28%), Postives = 90/128 (70.31%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSP-------AIPMMAMP--LNH---QKQIMVFNNGTASVCDLTELQ 72
           MGREFSLEL L PS+        AIPMMA+P  LNH   Q+QIMVF NG  S+CD TELQ
Sbjct: 1   MGREFSLELGLWPSASEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFTELQ 60

Query: 73  VRAILGIASQERNSSKSQWWSNPERLSLQM-----PNGNAGFSIKKSLQRFLQRRNTRRI 124
            RAIL I SQER  S++    NPE L++QM      NGNAGFSIKKSLQRFLQRR  RRI
Sbjct: 61  ARAILWIGSQER--SRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMRRI 120

[Close]

BLAST of CmoCh04G006660 vs. NCBI nr
Match: gi|449460082|ref|XP_004147775.1| (PREDICTED: protein TIFY 5A-like [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 9.1e-25
Identity = 76/130 (58.46%), Postives = 88/130 (67.69%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPA---------IPMMAMP--LNH---QKQIMVFNNGTASVCDLTE 72
           MGREFSLEL L PSS A         IPMM +P  L+H   Q+QIMVF NG  S+CD TE
Sbjct: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60

Query: 73  LQVRAILGIASQERNSSKSQWWSNPERLSLQM-----PNGNAGFSIKKSLQRFLQRRNTR 124
           LQ RAI+ + SQER+ +      NPE L++QM      NGNAGFSIKKSLQ+FLQRR  R
Sbjct: 61  LQARAIIWVGSQERSGNVR--CRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMR 120

[Close]

BLAST of CmoCh04G006660 vs. NCBI nr
Match: gi|566174097|ref|XP_002307919.2| (hypothetical protein POPTR_0006s02410g [Populus trichocarpa])

HSP 1 Score: 72.4 bits (176), Expect = 6.4e-10
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPA--IP-------MMAMPLNHQKQIMVFNNGTASVCDLTELQVRA 72
           M R+ +L+LCL P +P+  +P       +M  P   Q+ + +F NG  SVCD+TE Q RA
Sbjct: 1   MRRDSNLDLCLSPMAPSSSLPSASSHQNLMDEPAMRQQHLTIFYNGRISVCDVTEFQARA 60

Query: 73  ILGIASQERNSSKSQWWSN--PERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMYPY 124
           I+ +AS+E+    +   SN  P+ L  Q+ +   G S+K+SLQRFLQ+R  +R  ++ PY
Sbjct: 61  IIWLASREKEERSNTARSNQAPKPLHSQL-HSPPGLSLKRSLQRFLQKRK-KRAEAISPY 120

[Close]

BLAST of CmoCh04G006660 vs. NCBI nr
Match: gi|767812346|gb|AJT58404.1| (JAZ15 [Gossypium barbadense])

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-09
Identity = 49/120 (40.83%), Postives = 66/120 (55.00%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPAIPMMAM-------PLNHQKQIMVFNNGTASVCDLTELQVRAIL 72
           M R  +LEL L PSS       M       P   Q+Q+ +F NG   V D+TELQ +AIL
Sbjct: 1   MRRNCNLELRLLPSSYPSDSHDMMEERIESPKTQQQQLTIFYNGRVCVSDVTELQAKAIL 60

Query: 73  GIASQERN---SSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMYPYH 123
            +A++ER+    S + W      L  Q+   N   S+K+SLQRFLQ+R T RI++  PYH
Sbjct: 61  MLANRERDERMKSPTGWEPVSPTLKSQVKCPNTALSMKRSLQRFLQKRKT-RIQATSPYH 119

[Close]

BLAST of CmoCh04G006660 vs. NCBI nr
Match: gi|728842891|gb|KHG22334.1| (Protein TIFY 5A -like protein [Gossypium arboreum])

HSP 1 Score: 70.1 bits (170), Expect = 3.2e-09
Identity = 49/120 (40.83%), Postives = 66/120 (55.00%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPAIPMMAM-------PLNHQKQIMVFNNGTASVCDLTELQVRAIL 72
           M R  +LEL L PSS       M       P   Q+Q+ +F NG   V D+TELQ +AIL
Sbjct: 1   MRRNCNLELRLLPSSYPSDSHDMMEERIESPETQQQQLTIFYNGRVCVSDVTELQAKAIL 60

Query: 73  GIASQERN---SSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMYPYH 123
            +A++ER+    S + W      L  Q+   N   S+K+SLQRFLQ+R T RI++  PYH
Sbjct: 61  MLANRERDERMKSPTGWEPVSPTLKSQVKCPNTALSMKRSLQRFLQKRKT-RIQATSPYH 119

The following BLAST results are available for this feature:

BLAST of CmoCh04G006660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIF5A_ARATH	1.9e-06	40.63	Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1	[more]

BLAST of CmoCh04G006660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXG2_CUCSA	6.4e-25	58.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G062400 PE=4 SV=1	[more]
B9HDF1_POPTR	4.4e-10	38.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02410g PE=4 SV=2	[more]
A0A0D4D684_GOSBA	1.7e-09	40.83	JAZ15 OS=Gossypium barbadense PE=2 SV=1	[more]
A0A0B0PD22_GOSAR	2.2e-09	40.83	Protein TIFY 5A-like protein OS=Gossypium arboreum GN=F383_27488 PE=4 SV=1	[more]
A0A0D2TQQ5_GOSRA	2.9e-09	40.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G154300 PE=4 SV=1	[more]

BLAST of CmoCh04G006660 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30135.1	1.1e-07	40.63	jasmonate-zim-domain protein 8	[more]

BLAST of CmoCh04G006660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101894\|ref\|XP_008451847.1\|	1.7e-26	63.28	PREDICTED: protein TIFY 5A-like [Cucumis melo]	[more]
gi\|449460082\|ref\|XP_004147775.1\|	9.1e-25	58.46	PREDICTED: protein TIFY 5A-like [Cucumis sativus]	[more]
gi\|566174097\|ref\|XP_002307919.2\|	6.4e-10	38.52	hypothetical protein POPTR_0006s02410g [Populus trichocarpa]	[more]
gi\|767812346\|gb\|AJT58404.1\|	2.4e-09	40.83	JAZ15 [Gossypium barbadense]	[more]
gi\|728842891\|gb\|KHG22334.1\|	3.2e-09	40.83	Protein TIFY 5A -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018467	CCT_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0048583	regulation of response to stimulus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G006660.1	CmoCh04G006660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	CCT_2	coord: 100..121 score: 4.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G006660	Cucsa.179960	Cucumber (Gy14) v1	cgycmoB0512
CmoCh04G006660	CmaCh16G004820	Cucurbita maxima (Rimu)	cmacmoB340
CmoCh04G006660	CmaCh04G006190	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G006660	Cla005434	Watermelon (97103) v1	cmowmB686
CmoCh04G006660	Csa4G062400	Cucumber (Chinese Long) v2	cmocuB699
CmoCh04G006660	MELO3C016195	Melon (DHL92) v3.5.1	cmomeB693
CmoCh04G006660	ClCG07G010850	Watermelon (Charleston Gray)	cmowcgB677
CmoCh04G006660	CSPI04G07230	Wild cucumber (PI 183967)	cmocpiB707
CmoCh04G006660	Lsi07G008060	Bottle gourd (USVL1VR-Ls)	cmolsiB689
CmoCh04G006660	Cp4.1LG14g03160	Cucurbita pepo (Zucchini)	cmocpeB670
CmoCh04G006660	Cp4.1LG01g01020	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G006660	MELO3C016195.2	Melon (DHL92) v3.6.1	cmomedB787
CmoCh04G006660	CsaV3_4G007460	Cucumber (Chinese Long) v3	cmocucB0827
CmoCh04G006660	Cla97C07G137590	Watermelon (97103) v2	cmowmbB756
CmoCh04G006660	Bhi01G002389	Wax gourd	cmowgoB0844
CmoCh04G006660	CsGy4G007120	Cucumber (Gy14) v2	cgybcmoB515
CmoCh04G006660	Carg11405	Silver-seed gourd	carcmoB0902
CmoCh04G006660	Carg13126	Silver-seed gourd	carcmoB0058

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G006660	CmoCh16G005230	Cucurbita moschata (Rifu)	cmocmoB288

The following block(s) are covering this gene:

None