Cp4.1LG01g01020 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g01020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	jasmonate-zim-domain protein 8
Location	Cp4.1LG01 : 3238922 .. 3239824 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTGATATTTTTTGACAGTTTAAAAGTCTCTTATTTTCTTCAAATTAGATAGCTTTTGCCTAAAACCATAAACAACTCTGTTTTCCTCTCTTTATATATCATTTTTAGAGGTCTTATTGGGACAGAAAACAAATGAAAAAAGAGGTAAAGGGAATTGGCATTTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTTGTCTTTGCCCATCTTCTCCTGCTTCAGAGCCAACCTTCCAATTCTCTGCAATTCCCATGTGAGAGACCCCGTTTTTCTTCAGCTTCTTCTTCTTGTTTTTTCTGATAACTTTCATGGAAAGTGGATTTTGGGTTTTTGTTTATGGGTGTAGGATGGCCATGCCATTGAATCATCAGAAGCAGATCATGGTTTTCAATAATGGAACAGCTTCGGTCTGTGACTTGACTGAACTCCAGGTTCATTCCTACTTCTTTTTCACTCCAACTTTTGTTTTCATATGATTCCAAGATGAACTAAATTGGATACAATGTTTGCAGGTAAGAGCCATATTAGGGATAGCAAGCCAAGAGAGGAATAGCAGCAAGAGCCAATGGTGGAGCAACCCAGAACGGTTGAGTCTGCAAATGCCAAATGGGAATGCAGGTTTCTCCATTAAGAAATCTCTTCAGAGGTTCCTACAACGGAGAAACACCAGAAGAATTCGATCCATGTCTCCATATCACAAACCACGTACCTAATTCAAAGTTTATGCCTCCCAACCTCATCAAACAATCAATCAATCAATCAAAGAATTCTCATTTGCAATTGCAATCTGCTAACATTCTTATATTGTTGAATGTAAATGAGCAAGAACAAACCATAGGATAACTAGAAGTCGTTTCGCTCGATTGAATCAAAATACAACTGCCACATTAGAGGGCAATT

mRNA sequence

GTGTTGATATTTTTTGACAGTTTAAAAGTCTCTTATTTTCTTCAAATTAGATAGCTTTTGCCTAAAACCATAAACAACTCTGTTTTCCTCTCTTTATATATCATTTTTAGAGGTCTTATTGGGACAGAAAACAAATGAAAAAAGAGGTAAAGGGAATTGGCATTTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTTGTCTTTGCCCATCTTCTCCTGCTTCAGAGCCAACCTTCCAATTCTCTGCAATTCCCATGATGGCCATGCCATTGAATCATCAGAAGCAGATCATGGTTTTCAATAATGGAACAGCTTCGGTCTGTGACTTGACTGAACTCCAGGTAAGAGCCATATTAGGGATAGCAAGCCAAGAGAGGAATAGCAGCAAGAGCCAATGGTGGAGCAACCCAGAACGGTTGAGTCTGCAAATGCCAAATGGGAATGCAGGTTTCTCCATTAAGAAATCTCTTCAGAGGTTCCTACAACGGAGAAACACCAGAAGAATTCGATCCATGTCTCCATATCACAAACCACGTACCTAATTCAAAGTTTATGCCTCCCAACCTCATCAAACAATCAATCAATCAATCAAAGAATTCTCATTTGCAATTGCAATCTGCTAACATTCTTATATTGTTGAATGTAAATGAGCAAGAACAAACCATAGGATAACTAGAAGTCGTTTCGCTCGATTGAATCAAAATACAACTGCCACATTAGAGGGCAATT

Coding sequence (CDS)

ATGAAAAAAGAGGTAAAGGGAATTGGCATTTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTTGTCTTTGCCCATCTTCTCCTGCTTCAGAGCCAACCTTCCAATTCTCTGCAATTCCCATGATGGCCATGCCATTGAATCATCAGAAGCAGATCATGGTTTTCAATAATGGAACAGCTTCGGTCTGTGACTTGACTGAACTCCAGGTAAGAGCCATATTAGGGATAGCAAGCCAAGAGAGGAATAGCAGCAAGAGCCAATGGTGGAGCAACCCAGAACGGTTGAGTCTGCAAATGCCAAATGGGAATGCAGGTTTCTCCATTAAGAAATCTCTTCAGAGGTTCCTACAACGGAGAAACACCAGAAGAATTCGATCCATGTCTCCATATCACAAACCACGTACCTAA

Protein sequence

MKKEVKGIGIWQMGREFSLELCLCPSSPASEPTFQFSAIPMMAMPLNHQKQIMVFNNGTASVCDLTELQVRAILGIASQERNSSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMSPYHKPRT

Homology

[Close]

BLAST of Cp4.1LG01g01020 vs. Swiss-Prot
Match: TIF5A_ARATH (Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 1


Query: 19  LELCLCPSSPASEPTFQFSAIPMMA----MPLNHQKQIMVFNNGTASVC-DLTELQVRAI 78
           LEL L P+S  S+ +   S +   +     P    ++I +F NG      D+T LQ R+I
Sbjct: 9   LELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQARSI 68

Query: 79  LGIASQERNSSKSQWWSNPERLSL-----QMPNGNAGFSIKKSLQRFLQRRNTRRIRSMS 135
           + IAS+E  +  S   S+P   S      Q+PN  A  S+KKSLQ FLQ+R   RI++ S
Sbjct: 69  ISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKA--SMKKSLQSFLQKRKI-RIQATS 128

[Close]

BLAST of Cp4.1LG01g01020 vs. TrEMBL
Match: A0A0A0KXG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G062400 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-32
Identity = 85/130 (65.38%), Postives = 97/130 (74.62%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPASEPTFQFSAIPMMAMP--LNH---QKQIMVFNNGTASVCDLTE 72
           MGREFSLEL L PSS ASE TFQFSAIPMM +P  L+H   Q+QIMVF NG  S+CD TE
Sbjct: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60

Query: 73  LQVRAILGIASQERNSSKSQWWSNPERLSLQM-----PNGNAGFSIKKSLQRFLQRRNTR 132
           LQ RAI+ + SQER+ +      NPE L++QM      NGNAGFSIKKSLQ+FLQRR  R
Sbjct: 61  LQARAIIWVGSQERSGNVR--CRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMR 120

[Close]

BLAST of Cp4.1LG01g01020 vs. TrEMBL
Match: B9HDF1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02410g PE=4 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 3.9e-12
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPASEPTFQFSAIPMMAMPLNHQKQIMVFNNGTASVCDLTELQVRA 72
           M R+ +L+LCL P +P+S      S   +M  P   Q+ + +F NG  SVCD+TE Q RA
Sbjct: 1   MRRDSNLDLCLSPMAPSSSLPSASSHQNLMDEPAMRQQHLTIFYNGRISVCDVTEFQARA 60

Query: 73  ILGIASQERNSSKSQWWSN--PERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMSPY 132
           I+ +AS+E+    +   SN  P+ L  Q+ +   G S+K+SLQRFLQ+R  +R  ++SPY
Sbjct: 61  IIWLASREKEERSNTARSNQAPKPLHSQL-HSPPGLSLKRSLQRFLQKRK-KRAEAISPY 120

[Close]

BLAST of Cp4.1LG01g01020 vs. TrEMBL
Match: A0A0D4D684_GOSBA (JAZ15 OS=Gossypium barbadense PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPASEPTFQFSAIPMMAMPLNHQKQIMVFNNGTASVCDLTELQVRA 72
           M R  +LEL L PSS  S+          +  P   Q+Q+ +F NG   V D+TELQ +A
Sbjct: 1   MRRNCNLELRLLPSSYPSDSHDMMEE--RIESPKTQQQQLTIFYNGRVCVSDVTELQAKA 60

Query: 73  ILGIASQERN---SSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMSP 132
           IL +A++ER+    S + W      L  Q+   N   S+K+SLQRFLQ+R T RI++ SP
Sbjct: 61  ILMLANRERDERMKSPTGWEPVSPTLKSQVKCPNTALSMKRSLQRFLQKRKT-RIQATSP 119

[Close]

BLAST of Cp4.1LG01g01020 vs. TrEMBL
Match: A0A0B0PD22_GOSAR (Protein TIFY 5A-like protein OS=Gossypium arboreum GN=F383_27488 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-10
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPASEPTFQFSAIPMMAMPLNHQKQIMVFNNGTASVCDLTELQVRA 72
           M R  +LEL L PSS  S+          +  P   Q+Q+ +F NG   V D+TELQ +A
Sbjct: 1   MRRNCNLELRLLPSSYPSDSHDMMEE--RIESPETQQQQLTIFYNGRVCVSDVTELQAKA 60

Query: 73  ILGIASQERN---SSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMSP 132
           IL +A++ER+    S + W      L  Q+   N   S+K+SLQRFLQ+R T RI++ SP
Sbjct: 61  ILMLANRERDERMKSPTGWEPVSPTLKSQVKCPNTALSMKRSLQRFLQKRKT-RIQATSP 119

[Close]

BLAST of Cp4.1LG01g01020 vs. TrEMBL
Match: A0A0D2TQQ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G154300 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-10
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPASEPTFQFSAIPMMAMPLNHQKQIMVFNNGTASVCDLTELQVRA 72
           M R  +LEL L PSS  S+          +  P   Q+Q+ +F NG   V D+TELQ +A
Sbjct: 1   MRRNCNLELRLLPSSYPSDSHDMMEE--RIESPETQQQQLTIFYNGRVCVSDVTELQAKA 60

Query: 73  ILGIASQ---ERNSSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMSP 132
           IL +A++   ER  S + W      L  Q+ + N   S+K+SLQRFLQ+R T RI++ SP
Sbjct: 61  ILILANRERVERMKSPTGWEPVSPTLKSQVNSPNTSLSMKRSLQRFLQKRKT-RIQATSP 119

[Close]

BLAST of Cp4.1LG01g01020 vs. TAIR10
Match: AT1G30135.1 (AT1G30135.1 jasmonate-zim-domain protein 8)

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-09
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 1


Query: 19  LELCLCPSSPASEPTFQFSAIPMMA----MPLNHQKQIMVFNNGTASVC-DLTELQVRAI 78
           LEL L P+S  S+ +   S +   +     P    ++I +F NG      D+T LQ R+I
Sbjct: 9   LELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQARSI 68

Query: 79  LGIASQERNSSKSQWWSNPERLSL-----QMPNGNAGFSIKKSLQRFLQRRNTRRIRSMS 135
           + IAS+E  +  S   S+P   S      Q+PN  A  S+KKSLQ FLQ+R   RI++ S
Sbjct: 69  ISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKA--SMKKSLQSFLQKRKI-RIQATS 128

[Close]

BLAST of Cp4.1LG01g01020 vs. TAIR10
Match: AT2G34600.1 (AT2G34600.1 jasmonate-zim-domain protein 7)

HSP 1 Score: 47.4 bits (111), Expect = 8.3e-06
Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = 1


Query: 12  QMGREFSLELCLCPSSPASE--PTFQFSAIPMMAMPLNHQKQIMVFNNGTASVC-DLTEL 71
           +M  +  LEL L  SS  S+   +   S+   ++ P    + + +F NG   V  DLT L
Sbjct: 19  EMQTKCDLELRLLTSSYDSDFHSSLDESSSSEISQPKQESQILTIFYNGHMCVSSDLTHL 78

Query: 72  QVRAILGIASQERNSSKSQWWSNPERLSLQMPNGNAGF-----SIKKSLQRFLQRRNTRR 131
           +  AIL +AS++         S+       +PN +  F     S+K+SL  FLQ+R+  R
Sbjct: 79  EANAILSLASRDVEEKSLSLRSSDGSDPPTIPNNSTRFHYQKASMKRSLHSFLQKRSL-R 138

Query: 132 IRSMSPYHKPR 135
           I++ SPYH+ R
Sbjct: 139 IQATSPYHRYR 148

[Close]

BLAST of Cp4.1LG01g01020 vs. NCBI nr
Match: gi|659101894|ref|XP_008451847.1| (PREDICTED: protein TIFY 5A-like [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 7.5e-33
Identity = 91/130 (70.00%), Postives = 99/130 (76.15%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPASEPTFQFSAIPMMAMP--LNH---QKQIMVFNNGTASVCDLTE 72
           MGREFSLEL L PS  ASEPTFQFSAIPMMA+P  LNH   Q+QIMVF NG  S+CD TE
Sbjct: 1   MGREFSLELGLWPS--ASEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFTE 60

Query: 73  LQVRAILGIASQERNSSKSQWWSNPERLSLQM-----PNGNAGFSIKKSLQRFLQRRNTR 132
           LQ RAIL I SQER  S++    NPE L++QM      NGNAGFSIKKSLQRFLQRR  R
Sbjct: 61  LQARAILWIGSQER--SRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMR 120

[Close]

BLAST of Cp4.1LG01g01020 vs. NCBI nr
Match: gi|449460082|ref|XP_004147775.1| (PREDICTED: protein TIFY 5A-like [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 6.3e-32
Identity = 85/130 (65.38%), Postives = 97/130 (74.62%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPASEPTFQFSAIPMMAMP--LNH---QKQIMVFNNGTASVCDLTE 72
           MGREFSLEL L PSS ASE TFQFSAIPMM +P  L+H   Q+QIMVF NG  S+CD TE
Sbjct: 1   MGREFSLELGLWPSSSASESTFQFSAIPMMTLPFTLSHHQQQQQIMVFYNGALSICDFTE 60

Query: 73  LQVRAILGIASQERNSSKSQWWSNPERLSLQM-----PNGNAGFSIKKSLQRFLQRRNTR 132
           LQ RAI+ + SQER+ +      NPE L++QM      NGNAGFSIKKSLQ+FLQRR  R
Sbjct: 61  LQARAIIWVGSQERSGNVR--CRNPEWLNMQMLKSGNGNGNAGFSIKKSLQKFLQRRKMR 120

[Close]

BLAST of Cp4.1LG01g01020 vs. NCBI nr
Match: gi|566174097|ref|XP_002307919.2| (hypothetical protein POPTR_0006s02410g [Populus trichocarpa])

HSP 1 Score: 79.3 bits (194), Expect = 5.6e-12
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPASEPTFQFSAIPMMAMPLNHQKQIMVFNNGTASVCDLTELQVRA 72
           M R+ +L+LCL P +P+S      S   +M  P   Q+ + +F NG  SVCD+TE Q RA
Sbjct: 1   MRRDSNLDLCLSPMAPSSSLPSASSHQNLMDEPAMRQQHLTIFYNGRISVCDVTEFQARA 60

Query: 73  ILGIASQERNSSKSQWWSN--PERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMSPY 132
           I+ +AS+E+    +   SN  P+ L  Q+ +   G S+K+SLQRFLQ+R  +R  ++SPY
Sbjct: 61  IIWLASREKEERSNTARSNQAPKPLHSQL-HSPPGLSLKRSLQRFLQKRK-KRAEAISPY 120

[Close]

BLAST of Cp4.1LG01g01020 vs. NCBI nr
Match: gi|743920827|ref|XP_011004469.1| (PREDICTED: protein TIFY 5A-like isoform X1 [Populus euphratica])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPASE-PTFQFSAIPMMAMPLNHQKQIMVFNNGTASVCDLTELQVR 72
           M R+ +L+LCL P +P+S  P+       M   P   Q+ + +F NG  SVCD+TE Q R
Sbjct: 1   MRRDSNLDLCLSPMAPSSSSPSTTCHQNLMDIEPAMRQQHLTIFYNGRISVCDVTEFQAR 60

Query: 73  AILGIASQER----NSSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSM 132
           AI+ +AS+E     N+++S     P    L  P    G S+K+SLQRFLQ+R  +R  ++
Sbjct: 61  AIIWLASREEEERSNTARSNQAPKPLHSQLYSP---PGLSLKRSLQRFLQKRK-KRAEAI 120

[Close]

BLAST of Cp4.1LG01g01020 vs. NCBI nr
Match: gi|767812346|gb|AJT58404.1| (JAZ15 [Gossypium barbadense])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 1


Query: 13  MGREFSLELCLCPSSPASEPTFQFSAIPMMAMPLNHQKQIMVFNNGTASVCDLTELQVRA 72
           M R  +LEL L PSS  S+          +  P   Q+Q+ +F NG   V D+TELQ +A
Sbjct: 1   MRRNCNLELRLLPSSYPSDSHDMMEE--RIESPKTQQQQLTIFYNGRVCVSDVTELQAKA 60

Query: 73  ILGIASQERN---SSKSQWWSNPERLSLQMPNGNAGFSIKKSLQRFLQRRNTRRIRSMSP 132
           IL +A++ER+    S + W      L  Q+   N   S+K+SLQRFLQ+R T RI++ SP
Sbjct: 61  ILMLANRERDERMKSPTGWEPVSPTLKSQVKCPNTALSMKRSLQRFLQKRKT-RIQATSP 119

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g01020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIF5A_ARATH	1.1e-07	38.10	Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1	[more]

BLAST of Cp4.1LG01g01020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXG2_CUCSA	4.4e-32	65.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G062400 PE=4 SV=1	[more]
B9HDF1_POPTR	3.9e-12	40.16	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02410g PE=4 SV=2	[more]
A0A0D4D684_GOSBA	2.1e-10	40.98	JAZ15 OS=Gossypium barbadense PE=2 SV=1	[more]
A0A0B0PD22_GOSAR	2.8e-10	40.98	Protein TIFY 5A-like protein OS=Gossypium arboreum GN=F383_27488 PE=4 SV=1	[more]
A0A0D2TQQ5_GOSRA	3.6e-10	40.98	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G154300 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g01020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30135.1	6.1e-09	38.10	jasmonate-zim-domain protein 8	[more]
AT2G34600.1	8.3e-06	32.06	jasmonate-zim-domain protein 7	[more]

BLAST of Cp4.1LG01g01020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101894\|ref\|XP_008451847.1\|	7.5e-33	70.00	PREDICTED: protein TIFY 5A-like [Cucumis melo]	[more]
gi\|449460082\|ref\|XP_004147775.1\|	6.3e-32	65.38	PREDICTED: protein TIFY 5A-like [Cucumis sativus]	[more]
gi\|566174097\|ref\|XP_002307919.2\|	5.6e-12	40.16	hypothetical protein POPTR_0006s02410g [Populus trichocarpa]	[more]
gi\|743920827\|ref\|XP_011004469.1\|	1.1e-10	39.20	PREDICTED: protein TIFY 5A-like isoform X1 [Populus euphratica]	[more]
gi\|767812346\|gb\|AJT58404.1\|	3.1e-10	40.98	JAZ15 [Gossypium barbadense]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018467	CCT_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0048583	regulation of response to stimulus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g01020.1	Cp4.1LG01g01020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	CCT_2	coord: 109..130 score: 8.
None	No IPR available	PANTHER	PTHR33077	FAMILY NOT NAMED	coord: 12..132 score: 6.0
None	No IPR available	PANTHER	PTHR33077:SF17	PROTEIN TIFY 5A-RELATED	coord: 12..132 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g01020	Cucsa.179960	Cucumber (Gy14) v1	cgycpeB0494
Cp4.1LG01g01020	CmaCh16G004820	Cucurbita maxima (Rimu)	cmacpeB353
Cp4.1LG01g01020	CmaCh04G006190	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g01020	CmoCh04G006660	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g01020	CmoCh16G005230	Cucurbita moschata (Rifu)	cmocpeB315
Cp4.1LG01g01020	Cla005434	Watermelon (97103) v1	cpewmB419
Cp4.1LG01g01020	Csa4G062400	Cucumber (Chinese Long) v2	cpecuB399
Cp4.1LG01g01020	MELO3C016195	Melon (DHL92) v3.5.1	cpemeB423
Cp4.1LG01g01020	ClCG07G010850	Watermelon (Charleston Gray)	cpewcgB411
Cp4.1LG01g01020	CSPI04G07230	Wild cucumber (PI 183967)	cpecpiB396
Cp4.1LG01g01020	Lsi07G008060	Bottle gourd (USVL1VR-Ls)	cpelsiB372
Cp4.1LG01g01020	MELO3C016195.2	Melon (DHL92) v3.6.1	cpemedB495
Cp4.1LG01g01020	CsaV3_4G007460	Cucumber (Chinese Long) v3	cpecucB0496
Cp4.1LG01g01020	Bhi01G002389	Wax gourd	cpewgoB0509
Cp4.1LG01g01020	CsGy4G007120	Cucumber (Gy14) v2	cgybcpeB501
Cp4.1LG01g01020	Carg11405	Silver-seed gourd	carcpeB0929
Cp4.1LG01g01020	Carg13126	Silver-seed gourd	carcpeB0061

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g01020	Cp4.1LG14g03160	Cucurbita pepo (Zucchini)	cpecpeB236

The following block(s) are covering this gene:

None