MELO3C016177 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016177
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein Iojap/ribosomal silencing factor RsfS
Location	chr7 : 20211214 .. 20213078 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTGTATCAATGGCGAAGGTTGCAAGTGATGTAAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTATTGGACAAGGTTTTTCATCATTGCAACAGCATTTTCTCGCCCTCAGATCGATGCTATAGGGTACTGCTTCCTTTTTGGTTTTGTTGTCCTCTTATTACTTGCAATAAGGAAAATTGGACTCTAAATATGAAGGTTTTACTTAAACTGGTGTTCAATTATATTTTGCGATGCAGATCCCGGATAAGAGATCTTGCCGAGAAGAAGTACGGAAGAAGTTCTTCTGGTGACGTGAAGCCAAATTCCTGGACTTTATTGGATTTTGGTATGCACTATTTGTATTTAAATTTGAAGATATATGAGTGTTCCGTTATAGATGATGGATGCACTAGAAACCTGAACAGAGAACCAATTAGAAAGAAACAACTTGCATTAAACTAATAGCTATACAAAAATACGTAGTATACCTAGAGAGGAAAAAAAACTCCGGAAATATACCGTGAAAAGAAAACGAAGGGATCAGAGAACCAAAACGAGAAAAGAAAAGGTTCCTGTTAATGTGAATAAAAGAAAAAAGGATACTTGCAAAAAGTGCGTGTAAACAAAATTTTAAAATTTAGCCTTGTTGTCTATTAAAAAGTGCAACTTTGGTGTTTAGGACTTGGAATGTTTGGATATATCCTTCTAGGTACTAGTTCAAGCTCTTTGGTGGATGTTTCTAAAAGCAGCTTTTAGAGTGAGCAAAATTTTTCTGAGATTTAGTAGTAGGGATGGATCACGAACATAATGCAAGTAGTGAGGCCATTCGATTTGGTGGCATCCCATTTATATGAAAAAGAAATTGTCGTATATATGTCCATAGCAAAGATCCAAAGAGCATTAGATTCTAATCTCGTGAAGTACCAATGCTTCAATCTTTGAAAAAACATTTCAGATTAAGTCTACCAAAATGAAATGTAATTTTCCACCTATAGGAGCTCATCATTTAATATAGAGCAAATGGCCTCGAGACCTCTTTGTGACTATAGGATCATTTCATTGTCGCTTTATTATCGCTGCTGCTATGCCTTTTTTCATATCATGTGTGAACTCCGTTTTGGAATTCAGTTAAAATAGTAGTCCAAAATGTGCATCGATCGATCTTTGATACCGATGTACTAAGAAGCAAAGCAAATTGCTCTGCTGTTTTTTGTTCTCAGGAGATGTGGTTATCCATATTTTTCTACCCCAGCAGAGGGCTTTCTATAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCGTTCGAAAACCAACGGCCGTTTTGAAGTAAAAACCGCAGCGGATTCCCCTCCGAGCAGCTGATGGTGAAGGAAAAATGCAGTTTGTTGGCAGCTGGTGAGGCAGATTGCTTATGTTTGTTGTGTCCTCTCATGAAAACAGCTACCATGTGAAGTGTTGCAGAAGCAGCTGCATGAGTTGGGAGTTCCAACTTCTGACTGCTTGAGGTTGAAGACAGAATCACTTGGCAGATGGTGGTATTATTGAGAGCCCTATCCCAAACTTTCTTCTGTCTCCTAACTCTCCCTTTCTCTTTCTCTCTCTTATGAATCACTGGTTTGATTTGAGATAGTTTTTAAGTAAAGTTAGTTGTTATGAATCTAGTTGGTTAGAAGGGGCCCATATTACTTAGAACAATGAATTAAGATTCCATTACTAATTGGAGAAAACTTGTAGGAGAATTAAAATGAATTTGGTTTGGTTAAGTATTGTATTTGAATTTCTTGTATTAAGGATCAGAGAATCTCCATTTCATACTATTGTATTCATATTGTTCTCATGGTTCAAGCGAGAATTGATTT

mRNA sequence

TTGCTGTATCAATGGCGAAGGTTGCAAGTGATGTAAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTATTGGACAAGGTTTTTCATCATTGCAACAGCATTTTCTCGCCCTCAGATCGATGCTATAGGATCCCGGATAAGAGATCTTGCCGAGAAGAAGTACGGAAGAAGTTCTTCTGGTGACGTGAAGCCAAATTCCTGGACTTTATTGGATTTTGGAGATGTGGTTATCCATATTTTTCTACCCCAGCAGAGGGCTTTCTATAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCGTTCGAAAACCAACGGCCGTTTTGAAGTAAAAACCGCAGCGGATTCCCCTCCGAGCAGCTGATGGTGAAGGAAAAATGCAGTTTGTTGGCAGCTGGTGAGGCAGATTGCTTATGTTTGTTGTGTCCTCTCATGAAAACAGCTACCATGTGAAGTGTTGCAGAAGCAGCTGCATGAGTTGGGAGTTCCAACTTCTGACTGCTTGAGGTTGAAGACAGAATCACTTGGCAGATGGTGGTATTATTGAGAGCCCTATCCCAAACTTTCTTCTGTCTCCTAACTCTCCCTTTCTCTTTCTCTCTCTTATGAATCACTGGTTTGATTTGAGATAGTTTTTAAGTAAAGTTAGTTGTTATGAATCTAGTTGGTTAGAAGGGGCCCATATTACTTAGAACAATGAATTAAGATTCCATTACTAATTGGAGAAAACTTGTAGGAGAATTAAAATGAATTTGGTTTGGTTAAGTATTGTATTTGAATTTCTTGTATTAAGGATCAGAGAATCTCCATTTCATACTATTGTATTCATATTGTTCTCATGGTTCAAGCGAGAATTGATTT

Coding sequence (CDS)

ATGGCGAAGGTTGCAAGTGATGTAAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTATTGGACAAGGTTTTTCATCATTGCAACAGCATTTTCTCGCCCTCAGATCGATGCTATAGGATCCCGGATAAGAGATCTTGCCGAGAAGAAGTACGGAAGAAGTTCTTCTGGTGACGTGAAGCCAAATTCCTGGACTTTATTGGATTTTGGAGATGTGGTTATCCATATTTTTCTACCCCAGCAGAGGGCTTTCTATAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCGTTCGAAAACCAACGGCCGTTTTGA

Protein sequence

MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF*

Homology

[Close]

BLAST of MELO3C016177 vs. Swiss-Prot
Match: IOJAC_ARATH (Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-48
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           +AKVASDVKA DI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSR+RDLAEKKYG+ ++G
Sbjct: 127 LAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRDLAEKKYGKVANG 186

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQ 108
           DVKPNSWTLLDFGDVVIH+FLP QR FYNLE+FYGNA  +ELPFE+Q
Sbjct: 187 DVKPNSWTLLDFGDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFEDQ 233

[Close]

BLAST of MELO3C016177 vs. Swiss-Prot
Match: IOJAP_MAIZE (Protein Iojap, chloroplastic OS=Zea mays GN=Ij PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.2e-43
Identity = 81/108 (75.00%), Postives = 93/108 (86.11%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           +AK AS++KA DIRVL V+ LVYWTRFFII TAFS  QIDAI S++RD+ EK++ + +SG
Sbjct: 120 LAKAASEIKATDIRVLCVRRLVYWTRFFIILTAFSNAQIDAISSKMRDIGEKQFSKVASG 179

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQR 109
           D KPNSWTLLDFGDVV+HIFLPQQRAFYNLEEFYGNATP+ELPF+ QR
Sbjct: 180 DTKPNSWTLLDFGDVVVHIFLPQQRAFYNLEEFYGNATPIELPFDTQR 227

[Close]

BLAST of MELO3C016177 vs. Swiss-Prot
Match: IOJAP_SYNY3 (Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsfS PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-13
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           +A+ A + KA D+ +L V  + Y   +F+I T FSR Q+ AI   I    E  +G+  + 
Sbjct: 34  IAQAAEERKAGDLVILKVTDVSYLADYFVICTGFSRTQVRAIADNIEKQVELVHGQLPT- 93

Query: 61  DVKPNS---WTLLDFGDVVIHIFLPQQRAFYNLEEFYGNA 98
             + NS   W L DFGDV++H F+P++R FY LE F+G+A
Sbjct: 94  HTEGNSESIWVLQDFGDVLVHTFMPEEREFYKLEAFWGHA 132

[Close]

BLAST of MELO3C016177 vs. Swiss-Prot
Match: IOJAP_STRPN (Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rsfS PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.3e-10
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRD-LAEKKYGRSSS 60
           + K A + +A DI  L V+ L   T + +I ++ +  Q+DAI + IR+ +A+  +  S  
Sbjct: 10  VVKAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANIREKVAQAGFKGSHV 69

Query: 61  GDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVEL 103
                  W LLD G VV+HIF  + RA YNLE+ +  A  V++
Sbjct: 70  EGDAAGGWVLLDLGAVVVHIFSEEMRAHYNLEKLWHEANSVDI 112

[Close]

BLAST of MELO3C016177 vs. Swiss-Prot
Match: IOJAP_BACHD (Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rsfS PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 33/97 (34.02%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 7   DVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSGD-VKPN 66
           D KA  +  L +K +     FF+I    S  Q+ AI   ++ +A+++       +  +  
Sbjct: 16  DKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQA 75

Query: 67  SWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVEL 103
            W L+D GDVV+H+F   +RA+YNLE+ +G+A  VEL
Sbjct: 76  RWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPTVEL 112

[Close]

BLAST of MELO3C016177 vs. TrEMBL
Match: A0A0A0KVG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064060 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.3e-55
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRS SG
Sbjct: 135 MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSG 194

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 111
           DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 195 DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 244

[Close]

BLAST of MELO3C016177 vs. TrEMBL
Match: B9I0I6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14610g PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.8e-51
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           MAKVASDVKA+DIRVLFVKPLVYWTRFFIIATAFSRPQIDAI SR+RDLAEKKYG+  SG
Sbjct: 130 MAKVASDVKASDIRVLFVKPLVYWTRFFIIATAFSRPQIDAINSRMRDLAEKKYGKVPSG 189

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 111
           D KPNSWTLLDFGDVVIHIFLP QRAFYNLEEFYGNATP+ELPFENQ PF
Sbjct: 190 DTKPNSWTLLDFGDVVIHIFLPPQRAFYNLEEFYGNATPIELPFENQPPF 239

[Close]

BLAST of MELO3C016177 vs. TrEMBL
Match: A0A061FAQ0_THECC (Lojap-related protein isoform 2 OS=Theobroma cacao GN=TCM_032424 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.8e-51
Identity = 101/110 (91.82%), Postives = 105/110 (95.45%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGS+IRDLAEKKYG+  SG
Sbjct: 127 MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSKIRDLAEKKYGKIPSG 186

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 111
           D KPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNAT +ELP ENQ+PF
Sbjct: 187 DTKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATLIELPSENQQPF 236

[Close]

BLAST of MELO3C016177 vs. TrEMBL
Match: A9PCK9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.8e-51
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           MAKVASDVKA+DIRVLFVKPLVYWTRFFIIATAFSRPQIDAI SR+RDLAEKKYG+  SG
Sbjct: 39  MAKVASDVKASDIRVLFVKPLVYWTRFFIIATAFSRPQIDAINSRMRDLAEKKYGKVPSG 98

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 111
           D KPNSWTLLDFGDVVIHIFLP QRAFYNLEEFYGNATP+ELPFENQ PF
Sbjct: 99  DTKPNSWTLLDFGDVVIHIFLPPQRAFYNLEEFYGNATPIELPFENQPPF 148

[Close]

BLAST of MELO3C016177 vs. TrEMBL
Match: A0A0D2UYR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G355200 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.0e-50
Identity = 100/110 (90.91%), Postives = 103/110 (93.64%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG+  SG
Sbjct: 128 MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGKVPSG 187

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 111
           D KPNSWTLLDFGDVV+HIFLPQQRAFYNLEEFYGNAT +ELP E Q PF
Sbjct: 188 DAKPNSWTLLDFGDVVVHIFLPQQRAFYNLEEFYGNATLIELPSETQPPF 237

[Close]

BLAST of MELO3C016177 vs. TAIR10
Match: AT3G12930.1 (AT3G12930.1 Lojap-related protein)

HSP 1 Score: 193.4 bits (490), Expect = 7.7e-50
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           +AKVASDVKA DI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSR+RDLAEKKYG+ ++G
Sbjct: 127 LAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRDLAEKKYGKVANG 186

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQ 108
           DVKPNSWTLLDFGDVVIH+FLP QR FYNLE+FYGNA  +ELPFE+Q
Sbjct: 187 DVKPNSWTLLDFGDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFEDQ 233

[Close]

BLAST of MELO3C016177 vs. NCBI nr
Match: gi|659101845|ref|XP_008451822.1| (PREDICTED: protein Iojap, chloroplastic [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 8.8e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG
Sbjct: 46  MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 105

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 111
           DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 106 DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 155

[Close]

BLAST of MELO3C016177 vs. NCBI nr
Match: gi|449460046|ref|XP_004147757.1| (PREDICTED: protein Iojap, chloroplastic [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 3.3e-55
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRS SG
Sbjct: 135 MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSG 194

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 111
           DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 195 DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 244

[Close]

BLAST of MELO3C016177 vs. NCBI nr
Match: gi|1000978617|ref|XP_015571228.1| (PREDICTED: protein Iojap, chloroplastic [Ricinus communis])

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-51
Identity = 102/110 (92.73%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           MAKVASDVKA DIRVLFVKPLVYWTRFFIIATAFSRPQIDAI SRIRDLAEKKYGR  SG
Sbjct: 123 MAKVASDVKAGDIRVLFVKPLVYWTRFFIIATAFSRPQIDAIASRIRDLAEKKYGRVPSG 182

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 111
           D KPNSWTLLDFGDVVIHIFLP+QRAFYNLEEFYGNATP+ELPFENQ PF
Sbjct: 183 DTKPNSWTLLDFGDVVIHIFLPEQRAFYNLEEFYGNATPIELPFENQPPF 232

[Close]

BLAST of MELO3C016177 vs. NCBI nr
Match: gi|743859996|ref|XP_011030739.1| (PREDICTED: protein Iojap, chloroplastic isoform X1 [Populus euphratica])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           MAKVASDVKA+DIRVLFVKPLVYWTRFFIIATAFSRPQIDAI SR+RDLAEKKYG+  SG
Sbjct: 126 MAKVASDVKASDIRVLFVKPLVYWTRFFIIATAFSRPQIDAINSRMRDLAEKKYGKVPSG 185

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 111
           D KPNSWTLLDFGDVVIHIFLP QRAFYNLEEFYGNATP+ELPFENQ PF
Sbjct: 186 DTKPNSWTLLDFGDVVIHIFLPPQRAFYNLEEFYGNATPIELPFENQPPF 235

[Close]

BLAST of MELO3C016177 vs. NCBI nr
Match: gi|566195504|ref|XP_002317019.2| (hypothetical protein POPTR_0011s14610g [Populus trichocarpa])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 1   MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSG 60
           MAKVASDVKA+DIRVLFVKPLVYWTRFFIIATAFSRPQIDAI SR+RDLAEKKYG+  SG
Sbjct: 130 MAKVASDVKASDIRVLFVKPLVYWTRFFIIATAFSRPQIDAINSRMRDLAEKKYGKVPSG 189

Query: 61  DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 111
           D KPNSWTLLDFGDVVIHIFLP QRAFYNLEEFYGNATP+ELPFENQ PF
Sbjct: 190 DTKPNSWTLLDFGDVVIHIFLPPQRAFYNLEEFYGNATPIELPFENQPPF 239

The following BLAST results are available for this feature:

BLAST of MELO3C016177 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IOJAC_ARATH	1.4e-48	85.05	Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2 SV=1	[more]
IOJAP_MAIZE	2.2e-43	75.00	Protein Iojap, chloroplastic OS=Zea mays GN=Ij PE=1 SV=1	[more]
IOJAP_SYNY3	2.4e-13	40.00	Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]
IOJAP_STRPN	7.3e-10	34.95	Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain A...	[more]
IOJAP_BACHD	1.1e-08	34.02	Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DS...	[more]

BLAST of MELO3C016177 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVG5_CUCSA	2.3e-55	99.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064060 PE=3 SV=1	[more]
B9I0I6_POPTR	7.8e-51	90.91	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14610g PE=3 SV=1	[more]
A0A061FAQ0_THECC	7.8e-51	91.82	Lojap-related protein isoform 2 OS=Theobroma cacao GN=TCM_032424 PE=3 SV=1	[more]
A9PCK9_POPTR	7.8e-51	90.91	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
A0A0D2UYR0_GOSRA	5.0e-50	90.91	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G355200 PE=3 SV=1	[more]

BLAST of MELO3C016177 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12930.1	7.7e-50	85.05	Lojap-related protein	[more]

BLAST of MELO3C016177 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101845\|ref\|XP_008451822.1\|	8.8e-56	100.00	PREDICTED: protein Iojap, chloroplastic [Cucumis melo]	[more]
gi\|449460046\|ref\|XP_004147757.1\|	3.3e-55	99.09	PREDICTED: protein Iojap, chloroplastic [Cucumis sativus]	[more]
gi\|1000978617\|ref\|XP_015571228.1\|	1.3e-51	92.73	PREDICTED: protein Iojap, chloroplastic [Ricinus communis]	[more]
gi\|743859996\|ref\|XP_011030739.1\|	1.1e-50	90.91	PREDICTED: protein Iojap, chloroplastic isoform X1 [Populus euphratica]	[more]
gi\|566195504\|ref\|XP_002317019.2\|	1.1e-50	90.91	hypothetical protein POPTR_0011s14610g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004394	Iojap/RsfS/C7orf30

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0090071	negative regulation of ribosome biogenesis
biological_process	GO:0017148	negative regulation of translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043023	ribosomal large subunit binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU55129	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016177T1	MELO3C016177T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU55129	MU55129	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	PANTHER	PTHR21043	IOJAP SUPERFAMILY ORTHOLOG	coord: 1..110 score: 1.3
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	TIGRFAMs	TIGR00090	TIGR00090	coord: 2..94 score: 1.3
None	No IPR available	GENE3D	G3DSA:3.30.460.10		coord: 2..97 score: 6.0
None	No IPR available	PANTHER	PTHR21043:SF1	PROTEIN IOJAP, CHLOROPLASTIC	coord: 1..110 score: 1.3
None	No IPR available	PFAM	PF02410	RsfS	coord: 2..94 score: 4.2
None	No IPR available	unknown	SSF81301	Nucleotidyltransferase	coord: 2..104 score: 7.68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016177	Csa4G064060	Cucumber (Chinese Long) v2	cumeB314
MELO3C016177	ClCG07G010660	Watermelon (Charleston Gray)	mewcgB485
MELO3C016177	Cla97C07G137410	Watermelon (97103) v2	mewmbB491
MELO3C016177	Bhi01G002410	Wax gourd	mewgoB577
MELO3C016177	CSPI04G07420	Wild cucumber (PI 183967)	cpimeB312
MELO3C016177	Cucsa.179780	Cucumber (Gy14) v1	cgymeB323
MELO3C016177	CmaCh04G006310	Cucurbita maxima (Rimu)	cmameB701
MELO3C016177	CmoCh04G006800	Cucurbita moschata (Rifu)	cmomeB693
MELO3C016177	Cp4.1LG01g00940	Cucurbita pepo (Zucchini)	cpemeB423
MELO3C016177	CsGy4G007300	Cucumber (Gy14) v2	cgybmeB271
MELO3C016177	Carg13114	Silver-seed gourd	carmeB0042
MELO3C016177	CsaV3_4G007640	Cucumber (Chinese Long) v3	cucmeB317

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016177	Silver-seed gourd	carmeB0652
MELO3C016177	Cucumber (Chinese Long) v3	cucmeB306
MELO3C016177	Cucurbita maxima (Rimu)	cmameB301
MELO3C016177	Cucurbita moschata (Rifu)	cmomeB294
MELO3C016177	Wild cucumber (PI 183967)	cpimeB300
MELO3C016177	Cucumber (Chinese Long) v2	cumeB304
MELO3C016177	Watermelon (97103) v1	mewmB508
MELO3C016177	Cucurbita pepo (Zucchini)	cpemeB196
MELO3C016177	Bottle gourd (USVL1VR-Ls)	lsimeB455