CsaV3_4G007640 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G007640
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Protein Iojap/ribosomal silencing factor RsfS
Location	chr4 : 5251387 .. 5255875 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCACAAGATGTTCCATTAAAAAAAAAAAATTAAACTTCAGTATGTTTTTCTTTGAAATTTAATGAATTTGGAGACGAGGAAGAGCAACAGAAGTTGTATACTTTATGGGTTAATAATATGGAGTTTAATTTCATGAATGAAATGATGAAGATGCGACAATTGGATTTGACAAATAAACATTGCTTCATCGTTTAAAAACATCTTCCCTCACCGCAAAAGGACACAACCATGGCGTTATCCACTACCTTATCTCTTCACGGCGCCGGTGCCGGAACCTTGTTTGGCGCTGAGCTCCGGCAATTGGGTCACGATTATTTCGGAGTTTTCAAAAGACCCAGAAAACAAATTTTCTGCTCATGCTGGAATGGGTCTCCATTTCCTTACCGAAACTGCCTTTGGAGGGTACCCTCTGTCAATAACTTCCATTTGAAGTCAATGGAGTCCTCGCCATTGTTCGCCGTCGGAGGAGAAGCTGAAGATGGCTTTTTATCGGTATTTTCTTTTCATTTCCTTTGTTTGGAACTAACTTGAATTATGTTTCGTTAATATGTATTTGGAATAGATTTCGTTCTTGTTACTAATTGATGTGTGGTTTCTGGGATTTCGTTGAGGCATAACTTGATTGATCGAAATCTTACCTTTTTCTTTGTTCAAAATGGATGTTATTTGCTAAAAGAAAAGAGGCTTCTCTCTTATCTTTCCCCTTTATTTTTGGAGCTGAAGCTACTTGGGATTATGGGAGGAACCTTATCTACTTGGAAGTTATTTGCAAAAAGAAAAAGAAGCTCACTTATCTCTCTCTCTTTGTATTTTTTTTCCTTTTGCACTGGTTGTTTGAATGCTGCAGCTAATTGGGAATTGATAAGAACCTTGTCAAAATTAAGAAAGTTATTAGCAAAAACAACAGGAGCCCTCCTCCTTGGATCTACTGGGGAAGAATATTCTCAAAATGAGAGTAACTTGCAAAATAAAATTAGTCTCTCCATCTCCCTCTTTCATATTCCCTTTACTTTGATCTTTGGATGATGCAGCTGCCTGAGAGGAGCTTCATCAAATCGGAAGTTTCAAAAGAAAGAAGAAATCTGTCTCTCTCTTTCTCTCTTCTGTAGTTTTCCTTGATAATGGTGGGATTGAGTTACTTTGAACTGTATTAAACATTCAGTATTGAGTACAGTGATTTAGCCTATGAATCATACTTTATGTTTCTTTACTGGGTTCTAAATGATGCTTTTTGTAAAAAGGAAACAAGAAACTGACGATTGAAGAGGCTGAATCCAAGACACTCTTTTGAATTGTTCTGGAACTTGTATGTTCATTTACTTGCTGATCTTCGTAGAAAAATCAAGTCATCATTATGTTTTCATTTTCAGACTCAAATTTAATTTGGATTTTGGTGAAGGAAAAAAAATACTAATCAAACCGATCTATACTAACTCTGGATATCAATTTATTTTAAATGATTGCCTTAGGGTAAAGATCGTAATGGTTTCTATTACACATTCTAAATGTCTGATATTTTTGTTGCTGTTGCACGTTACTGCAACTACTTGCGATACTTGCGATACTGTCAGACTCAAACTTAAATTTGGTATAAAGGAAAAAAAAAATACTAATCAAACTGGTCTGCACTAACTTTTGATATTAATTTATTTTAAATGATTGCCATAGGGTAGAGATCTTGATGCATTTTATTGCGCATTTAAATGTCGGATGCTTTTTGTTGTGAAGTACTGCATTTGCTTGTGATATTGATCAACCCAGTCAATGATTTCTGGCAGAATATGAATGATGAAACCGATGACATGTATGATGAATTGTTCAAGAAATATGGGAATGTGGTATTCAAGAGCAATGACCAAAAGCCTCCCAGTGCAGAAATTGACGATGACTCGGAAAGCCTTTCATGTAAGTGATATCTCTTTACATTAGCAAGATCAAGAAGCAAACATAAGCATGTTGTGGACAAATCTGTTGTGTTCATGTGGTGATTTGCCTGCCAACTGCCTGCTTCATCTATGAGTATAATGAATAATCTTAGCTAATATATCTTAATTTGATATGGTTTCTAGTAGTGTTGTTGTTAAGTATTTAAACGAAAGGAATGGAACAATCTTATCATTCTTTGGTTGAATCAGTAACAGAAATGGGAAGTGGAATGGAAAAAATGATTTCCTTGGCATTTCCAGAGGTTTCTTTTCCCCTCTCATTTGATGTGAAATGGTTACGTACAAATTACATATCTATCCAAAAACAAGTGTAGATCGTCGAATCCACCTGGGCAGTCCTTTTAATTGGAGAAGTTGAGAGAATTCATATTCATTCTGAAGGGATTGAATAAGCCTTTTGGATGTGTACCATAGACAACAAAATAGCGAAAGAAAACAGTCTAAGGGCAGCGGAAGATGTGACCCTTCCTGTAGAAACTAAAAAACTGCTATCCAGTAGTTTCGAATCAGTTAAAAATGAATTTTGTTTCTCACACGCCACCAGGACACTCTAAGCTGTACATTACTACAAAAACCCTCAAAGAGCAATCAAAGATAGAAAACAATAGGTACCTCAAGTTTTCAACTTTTCAATAGGCAGAAAGCAACTATGGACGAACAATTAGTACATAATTAACATACGTATTTTGTCCAGTTATATTGTGAATTCAAAACTTCATTACATGGAATGATTCGTGAACTAATTTTCCAATGCTTATCTCTGTAGTTGCTGTATCAATGGCGAAGGTTGCAAGTGATGTAAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTATTGGACAAGATTTTTCATCATTGCAACAGCATTTTCTCGCCCTCAGATCGATGCTATTGGGTACTGCTGCCTTTTTGGTTTGTTGTCCTCTTATCGCTTGCAATAAGGAAATCTATATATGAAGGTTTTCCTTAAACTGATGTTCAATTATATTTTCCAATGCAGATCCCGAATAAGAGATCTTGCCGAGAAGAAGTATGGAAGAAGTCCTTCTGGTGATGTGAAGCCAAATTCCTGGACTTTGTTGGATTTTGGTATGCACTATTTGTATTTCACTTTGATGATAAATGAGTGTTCCGTTAGAGATGATGGATGCACCAGAAACCTGGACAGAGAACCAATTAGAAAGAAACAACTTGTGTTGAACTAATAGCTATACGAAAATACGTAGTATACCTAGAGGAAAAAAAAACTCCTGAAATGATCCTTCTAGGTACTAGTTCAAGCTCTTTGGTGGATGTTTCTAAATAGCAGCTTTTAGAGTGAGCAAAATTTTTCTGAGATTTAGTAGTAGGGATGGATGATGAACTTAATGTAAGTAGTGAGGCCATTTAATTTGGTGGCATCCCATTTATATGAAAAAGGAATTGATGTATAAATGTCCGTAGCGAAGATCTAAAGAGCATTAGATTCTAATCTCGTGAAGTACCAATGCTTCAATCTTTAAAAAAAACCATTTCAGATTAAGTCTATCAAAATGAAATGTGATTTTTCACCAATCAGAGCTCATCATTTAATATAGAGCGGATATGGCTTTGAGACCTCTTTGTGACTATAGGATCATTTTATCATCGCTTTATTATCGGTGTGCTATGCCTTTTTCCATATTATGTGTGAAGTCCATTTTGGAATTCAGTTAAGATATTAGTCCAAAATGTGCATCGATTGATCTTTGATACCGAAGAACTAAGAAGTAAAGCAAATTGCTGTGATGTTTTTTGTTCTCAGGAGATGTGGTTATCCATATTTTTCTACCCCAGCAGAGGGCATTCTATAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCGTTCGAAAACCAACGGCCGTTTTGAAGTAAAAACCGCAGCGGATTTCCCGCCGAGCAGCTGATGGTGAAGGAAAAATGCAGTTTGTTGGCAGCTGGTGAGGCAGATTGCTTATGTTTGTTGTGTCCTCTCATGAAAACAGCTACCATGTGAAGTGTTGCAGAAGCAGCTGCATGAGTTGGGAGTTCCAACTTCTGACTGCTTGAGGTTGAAGACAGAATCACTTGGCAGATGGTGGTATTATTGAGAGCCCTATCCCAAACTTTCTTCTGTCTCCTAACTCTCCCTTTCTCTTTCTCTTTCTCTTTCTCTCTCTTATGAATCACTGGTTTGATTTGAGATAGTTTTTAAGTAAAGTTAGTTGTTATGAATCTAGTTGGTTAGAAGGGGCCCTATTACTTACACCAATGAATTAAGATTCCATTACTAATTGGAGAAAACTTGTAGGAGAATTAAAATGAATTTGGTTTGGTCAAGTATTGTATTCGAATTTCTTGTATATTAAGGATATCAGAGAATCTCCATCTCATACTATTGTATTCAATATTCATATTGTTCTCATGGTTGAAGTGAGAATTGATTTTTAATTTGCAGAATCTTTTGTTAAACTACAAAAATGAAAATCAAAAGAAATAAAACAGATTTGGATCAACATTTT

mRNA sequence

ATGGCGTTATCCACTACCTTATCTCTTCACGGCGCCGGTGCCGGAACCTTGTTTGGCGCTGAGCTCCGGCAATTGGGTCACGATTATTTCGGAGTTTTCAAAAGACCCAGAAAACAAATTTTCTGCTCATGCTGGAATGGGTCTCCATTTCCTTACCGAAACTGCCTTTGGAGGGTACCCTCTGTCAATAACTTCCATTTGAAGTCAATGGAGTCCTCGCCATTGTTCGCCGTCGGAGGAGAAGCTGAAGATGGCTTTTTATCGAATATGAATGATGAAACCGATGACATGTATGATGAATTGTTCAAGAAATATGGGAATGTGGTATTCAAGAGCAATGACCAAAAGCCTCCCAGTGCAGAAATTGACGATGACTCGGAAAGCCTTTCATTTGCTGTATCAATGGCGAAGGTTGCAAGTGATGTAAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTATTGGACAAGATTTTTCATCATTGCAACAGCATTTTCTCGCCCTCAGATCGATGCTATTGGATCCCGAATAAGAGATCTTGCCGAGAAGAAGTATGGAAGAAGTCCTTCTGGTGATGTGAAGCCAAATTCCTGGACTTTGTTGGATTTTGGAGATGTGGTTATCCATATTTTTCTACCCCAGCAGAGGGCATTCTATAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCGTTCGAAAACCAACGGCCGTTTTGA

Coding sequence (CDS)

ATGGCGTTATCCACTACCTTATCTCTTCACGGCGCCGGTGCCGGAACCTTGTTTGGCGCTGAGCTCCGGCAATTGGGTCACGATTATTTCGGAGTTTTCAAAAGACCCAGAAAACAAATTTTCTGCTCATGCTGGAATGGGTCTCCATTTCCTTACCGAAACTGCCTTTGGAGGGTACCCTCTGTCAATAACTTCCATTTGAAGTCAATGGAGTCCTCGCCATTGTTCGCCGTCGGAGGAGAAGCTGAAGATGGCTTTTTATCGAATATGAATGATGAAACCGATGACATGTATGATGAATTGTTCAAGAAATATGGGAATGTGGTATTCAAGAGCAATGACCAAAAGCCTCCCAGTGCAGAAATTGACGATGACTCGGAAAGCCTTTCATTTGCTGTATCAATGGCGAAGGTTGCAAGTGATGTAAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTATTGGACAAGATTTTTCATCATTGCAACAGCATTTTCTCGCCCTCAGATCGATGCTATTGGATCCCGAATAAGAGATCTTGCCGAGAAGAAGTATGGAAGAAGTCCTTCTGGTGATGTGAAGCCAAATTCCTGGACTTTGTTGGATTTTGGAGATGTGGTTATCCATATTTTTCTACCCCAGCAGAGGGCATTCTATAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCGTTCGAAAACCAACGGCCGTTTTGA

Protein sequence

MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVPSVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF

Homology

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BLAST of CsaV3_4G007640 vs. NCBI nr
Match: XP_004147757.1 (PREDICTED: protein Iojap, chloroplastic [Cucumis sativus] >KGN53523.1 hypothetical protein Csa_4G064060 [Cucumis sativus])

HSP 1 Score: 505.4 bits (1300), Expect = 1.1e-139
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60
           MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP
Sbjct: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60

Query: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120
           SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA
Sbjct: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120

Query: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240
           RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240

Query: 241 QRPF 245
           QRPF
Sbjct: 241 QRPF 244

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BLAST of CsaV3_4G007640 vs. NCBI nr
Match: XP_023524638.1 (protein Iojap, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 451.8 bits (1161), Expect = 1.5e-123
Identity = 215/244 (88.11%), Postives = 229/244 (93.85%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60
           MALS  LSLHGAGAGT FG + RQLGHDYFGV  RPRKQ +CSCWNGS F  RNC+W++P
Sbjct: 1   MALSIVLSLHGAGAGTSFGGQFRQLGHDYFGVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60

Query: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120
           S NNFHLKSMESSPLFAVG EAED FLSNMN++TDDMYD+LFKK+G+VVFK NDQKPP+A
Sbjct: 61  SSNNFHLKSMESSPLFAVGKEAEDSFLSNMNEDTDDMYDDLFKKHGSVVFKRNDQKPPTA 120

Query: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDD+ESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240
           RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240

Query: 241 QRPF 245
           Q+PF
Sbjct: 241 QQPF 244

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BLAST of CsaV3_4G007640 vs. NCBI nr
Match: XP_022942371.1 (protein Iojap, chloroplastic [Cucurbita moschata])

HSP 1 Score: 448.4 bits (1152), Expect = 1.6e-122
Identity = 213/244 (87.30%), Postives = 229/244 (93.85%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60
           MALS  LSLHGAGAGT FG + RQLGHDYFGV  RPRKQ +CSCWNGS F  +NC+W++P
Sbjct: 1   MALSIVLSLHGAGAGTSFGGQFRQLGHDYFGVSGRPRKQFWCSCWNGSSFSSQNCIWKIP 60

Query: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120
           S NNFHLKSMESSPLFAVG EAED FLSNMN++TDDMYD+LFKK+G+VVFK +DQKPP+A
Sbjct: 61  SSNNFHLKSMESSPLFAVGKEAEDSFLSNMNEDTDDMYDDLFKKHGSVVFKRDDQKPPTA 120

Query: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDD+ESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240
           RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240

Query: 241 QRPF 245
           Q+PF
Sbjct: 241 QQPF 244

[Close]

BLAST of CsaV3_4G007640 vs. NCBI nr
Match: XP_022982446.1 (protein Iojap, chloroplastic [Cucurbita maxima])

HSP 1 Score: 445.3 bits (1144), Expect = 1.4e-121
Identity = 213/244 (87.30%), Postives = 227/244 (93.03%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60
           MALS  LSLHGAGA T FG E RQLGHDYF V  RPRKQ +CSCWNGS F  RNC+W++P
Sbjct: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60

Query: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120
           S +NFHLKSMESSPLF+VG EAED FLSNMN++TDDMYD+LFKK+GNVVFK NDQKPP+A
Sbjct: 61  SSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPTA 120

Query: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDD+ESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240
           RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240

Query: 241 QRPF 245
           Q+PF
Sbjct: 241 QQPF 244

[Close]

BLAST of CsaV3_4G007640 vs. NCBI nr
Match: XP_022136946.1 (protein Iojap, chloroplastic [Momordica charantia])

HSP 1 Score: 433.3 bits (1113), Expect = 5.4e-118
Identity = 214/248 (86.29%), Postives = 226/248 (91.13%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWN----GSPFPYRNCL 60
           MALST LSLHG GAGTLFG E RQLGH+ F +  RPRKQ   S WN     SPFPYRNC+
Sbjct: 1   MALSTILSLHG-GAGTLFGGEFRQLGHEVFRISIRPRKQFCRSSWNXXXXXSPFPYRNCI 60

Query: 61  WRVPSVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQK 120
           WR+PS +NFHLKSMESSPLFAVGGEAED  LSNM+++TDDMYD+LFKKYGNVVFKSNDQK
Sbjct: 61  WRLPSASNFHLKSMESSPLFAVGGEAEDSSLSNMSEDTDDMYDDLFKKYGNVVFKSNDQK 120

Query: 121 PPSAEIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAI 180
            PSAE+DDD+ESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAI
Sbjct: 121 LPSAEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAI 180

Query: 181 GSRIRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVEL 240
           GSR+RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQR FYNLEEFYGNATPVEL
Sbjct: 181 GSRLRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQREFYNLEEFYGNATPVEL 240

Query: 241 PFENQRPF 245
           PFENQRPF
Sbjct: 241 PFENQRPF 247

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BLAST of CsaV3_4G007640 vs. TAIR10
Match: AT3G12930.1 (Lojap-related protein)

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-78
Identity = 150/241 (62.24%), Postives = 181/241 (75.10%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60
           MA ST L++    AG L   + R        + ++    + C        PY NC WR+ 
Sbjct: 1   MASSTGLTV----AGALLAGDFRLPAVSSL-IPRKTSSSLSCLSNRDLSSPY-NCCWRLS 60

Query: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120
                 L S+ +S  FAVG EAEDGFLSN++++TD+M+D+LF KYG VVF+S D K P+A
Sbjct: 61  --RGKILTSLSNSRKFAVGKEAEDGFLSNVSEDTDEMFDDLFNKYGKVVFRSTDVKSPTA 120

Query: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDD+ESL+FAV +AKVASDVKA DI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSR+
Sbjct: 121 EVDDDAESLAFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRM 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240
           RDLAEKKYG+  +GDVKPNSWTLLDFGDVVIH+FLP QR FYNLE+FYGNA  +ELPFE+
Sbjct: 181 RDLAEKKYGKVANGDVKPNSWTLLDFGDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFED 233

Query: 241 Q 242
           Q
Sbjct: 241 Q 233

[Close]

BLAST of CsaV3_4G007640 vs. Swiss-Prot
Match: sp|Q9LDY9|IOJAC_ARATH (Protein Iojap, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IJ PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 3.1e-77
Identity = 150/241 (62.24%), Postives = 181/241 (75.10%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60
           MA ST L++    AG L   + R        + ++    + C        PY NC WR+ 
Sbjct: 1   MASSTGLTV----AGALLAGDFRLPAVSSL-IPRKTSSSLSCLSNRDLSSPY-NCCWRLS 60

Query: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120
                 L S+ +S  FAVG EAEDGFLSN++++TD+M+D+LF KYG VVF+S D K P+A
Sbjct: 61  --RGKILTSLSNSRKFAVGKEAEDGFLSNVSEDTDEMFDDLFNKYGKVVFRSTDVKSPTA 120

Query: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDD+ESL+FAV +AKVASDVKA DI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSR+
Sbjct: 121 EVDDDAESLAFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRM 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240
           RDLAEKKYG+  +GDVKPNSWTLLDFGDVVIH+FLP QR FYNLE+FYGNA  +ELPFE+
Sbjct: 181 RDLAEKKYGKVANGDVKPNSWTLLDFGDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFED 233

Query: 241 Q 242
           Q
Sbjct: 241 Q 233

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BLAST of CsaV3_4G007640 vs. Swiss-Prot
Match: sp|Q41822|IOJAP_MAIZE (Protein Iojap, chloroplastic OS=Zea mays OX=4577 GN=Ij PE=1 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-55
Identity = 104/159 (65.41%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 88  SNMN----DETDDMYDELFKKYGNVVFKSNDQKPPSAEIDDDSESLSFAVSMAKVASDVK 147
           SN+N    D+ D + ++L K++G VV+ S     P+ E DDD+E LSFAVS+AK AS++K
Sbjct: 69  SNVNFGRGDDADKLLEDLLKQHGEVVYSSGGPPDPTVEADDDAECLSFAVSLAKAASEIK 128

Query: 148 AADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTL 207
           A DIRVL V+ LVYWTRFFII TAFS  QIDAI S++RD+ EK++ +  SGD KPNSWTL
Sbjct: 129 ATDIRVLCVRRLVYWTRFFIILTAFSNAQIDAISSKMRDIGEKQFSKVASGDTKPNSWTL 188

Query: 208 LDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQR 243
           LDFGDVV+HIFLPQQRAFYNLEEFYGNATP+ELPF+ QR
Sbjct: 189 LDFGDVVVHIFLPQQRAFYNLEEFYGNATPIELPFDTQR 227

[Close]

BLAST of CsaV3_4G007640 vs. Swiss-Prot
Match: sp|P73658|IOJAP_SYNY3 (Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsfS PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 134 SMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPS 193
           ++A+ A + KA D+ +L V  + Y   +F+I T FSR Q+ AI   I    E  +G+ P+
Sbjct: 33  TIAQAAEERKAGDLVILKVTDVSYLADYFVICTGFSRTQVRAIADNIEKQVELVHGQLPT 92

Query: 194 GDVKPNS---WTLLDFGDVVIHIFLPQQRAFYNLEEFYGNA 232
              + NS   W L DFGDV++H F+P++R FY LE F+G+A
Sbjct: 93  -HTEGNSESIWVLQDFGDVLVHTFMPEEREFYKLEAFWGHA 132

[Close]

BLAST of CsaV3_4G007640 vs. Swiss-Prot
Match: sp|Q97P97|IOJAP_STRPN (Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=rsfS PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-10
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 135 MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRD-LAEKKY-GRSP 194
           + K A + +A DI  L V+ L   T + +I ++ +  Q+DAI + IR+ +A+  + G   
Sbjct: 10  VVKAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANIREKVAQAGFKGSHV 69

Query: 195 SGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVEL 237
            GD     W LLD G VV+HIF  + RA YNLE+ +  A  V++
Sbjct: 70  EGDA-AGGWVLLDLGAVVVHIFSEEMRAHYNLEKLWHEANSVDI 112

[Close]

BLAST of CsaV3_4G007640 vs. Swiss-Prot
Match: sp|Q9KD89|IOJAP_BACHD (Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=rsfS PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-09
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 125 DSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLA 184
           + E L  AV+      D KA  +  L +K +     FF+I    S  Q+ AI   ++ +A
Sbjct: 3   NQELLQLAVN---AVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVA 62

Query: 185 -EKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVEL 237
            E+          +   W L+D GDVV+H+F   +RA+YNLE+ +G+A  VEL
Sbjct: 63  QEQGIEIKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPTVEL 112

[Close]

BLAST of CsaV3_4G007640 vs. TrEMBL
Match: tr|A0A0A0KVG5|A0A0A0KVG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G064060 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 7.3e-140
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60
           MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP
Sbjct: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60

Query: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120
           SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA
Sbjct: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120

Query: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240
           RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240

Query: 241 QRPF 245
           QRPF
Sbjct: 241 QRPF 244

[Close]

BLAST of CsaV3_4G007640 vs. TrEMBL
Match: tr|A0A1Q3B819|A0A1Q3B819_CEPFO (Oligomerisation domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_07628 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 2.7e-86
Identity = 162/248 (65.32%), Postives = 190/248 (76.61%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60
           MA+S TLSL GAG G +F  E  Q+G     + KRP K     C NG    + NC W++P
Sbjct: 1   MAVSATLSLAGAGNGAIFYGEFEQVGRVNSKLCKRPTKHFDWFCLNGHQILHANCYWQIP 60

Query: 61  ----SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQK 120
                + NF  + +     +  G +    +L N++++TDDM+D+LF+KYG VVF+SN+QK
Sbjct: 61  RNGGKLQNFKSRDLPLPLAYGKGAKVMT-YLQNVSEDTDDMFDDLFRKYGKVVFRSNEQK 120

Query: 121 PPSAEIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAI 180
           PP+AE+DDD+ESLSFAV MAKVASDVKA DI+VLFVKPLVYWTRFFII TAFSRPQIDAI
Sbjct: 121 PPTAEVDDDAESLSFAVEMAKVASDVKAGDIKVLFVKPLVYWTRFFIIVTAFSRPQIDAI 180

Query: 181 GSRIRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVEL 240
           GSRIRDLAEKKYG+ PSGD KPNSWTLLDFGDVVIHIFLP QRAFYNLEEFYGNAT +EL
Sbjct: 181 GSRIRDLAEKKYGKVPSGDTKPNSWTLLDFGDVVIHIFLPPQRAFYNLEEFYGNATLIEL 240

Query: 241 PFENQRPF 245
           PFENQ PF
Sbjct: 241 PFENQPPF 247

[Close]

BLAST of CsaV3_4G007640 vs. TrEMBL
Match: tr|V4VN54|V4VN54_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021874mg PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 2.3e-85
Identity = 162/245 (66.12%), Postives = 189/245 (77.14%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60
           M  S TLSL GA +GT F  E   LG     +  +PRK +   C NG     R C W++P
Sbjct: 1   MIASATLSLAGAVSGTRFTCEFHPLGRLEAKLSHKPRKHVEWFCINGHHLLNRKCFWQIP 60

Query: 61  -SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPS 120
            S N+ + K  +    FA G +AED  LSN++++TD+M+D L KKYG VV++ NDQK P+
Sbjct: 61  RSRNSINFKPRDLPLHFAYGKDAEDSSLSNVSEDTDEMFDNLLKKYGKVVYRRNDQKSPT 120

Query: 121 AEIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AEIDDD+ESLSFAV+MA+V SDVKAADI+VLFVKPLVYWT FFIIATAFSRPQIDAIGSR
Sbjct: 121 AEIDDDAESLSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSR 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           IRDLAEK+YG+ PSGD KPNSWTLLDFGDVV+HIFLPQQR FYNLEEFYGNAT +ELPFE
Sbjct: 181 IRDLAEKEYGKVPSGDSKPNSWTLLDFGDVVVHIFLPQQRVFYNLEEFYGNATTIELPFE 240

Query: 241 NQRPF 245
           NQ PF
Sbjct: 241 NQPPF 245

[Close]

BLAST of CsaV3_4G007640 vs. TrEMBL
Match: tr|A0A2K1YK83|A0A2K1YK83_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G142900v3 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.0e-85
Identity = 164/245 (66.94%), Postives = 188/245 (76.73%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFP-YRNCLWRV 60
           MA+ST LS+ GAGAGT F  + +QLG     + ++PRK     C      P Y  C W+ 
Sbjct: 1   MAVSTALSIAGAGAGTRFSGDFQQLGRVETRLSQKPRKHSGWLCLYRHQLPHYYKCFWQE 60

Query: 61  PSVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPS 120
                   K        A+  +++DGFLSN+ D TD+M+D+LF KYG VVF+SND KPP+
Sbjct: 61  SRTEKLSFKQS-----LALRKDSDDGFLSNVED-TDEMFDDLFNKYGKVVFRSNDNKPPT 120

Query: 121 AEIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AE+DDD+ESLSFAV MAKVASDVKA+DIRVLFVKPLVYWTRFFIIATAFSRPQIDAI SR
Sbjct: 121 AEVDDDAESLSFAVEMAKVASDVKASDIRVLFVKPLVYWTRFFIIATAFSRPQIDAINSR 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           +RDLAEKKYG+ PSGD KPNSWTLLDFGDVVIHIFLP QRAFYNLEEFYGNATP+ELPFE
Sbjct: 181 MRDLAEKKYGKVPSGDTKPNSWTLLDFGDVVIHIFLPPQRAFYNLEEFYGNATPIELPFE 239

Query: 241 NQRPF 245
           NQ PF
Sbjct: 241 NQPPF 239

[Close]

BLAST of CsaV3_4G007640 vs. TrEMBL
Match: tr|A0A2H5QE26|A0A2H5QE26_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_220920 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 6.8e-85
Identity = 162/245 (66.12%), Postives = 189/245 (77.14%), Query Frame = 0


Query: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60
           M  S TLSL GA +GT F  E   LG     +  +PRK +   C NG       C W++P
Sbjct: 1   MIASATLSLAGAVSGTRFSCEFHPLGRLETKLSHKPRKHVEWFCINGHHLLNCMCFWQIP 60

Query: 61  -SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPS 120
            S N+ + K  +    FA G +AED  LSN++++TD+M+D L KKYG VV++ NDQK P+
Sbjct: 61  RSRNSINFKPRDLPLHFAYGKDAEDSSLSNVSEDTDEMFDNLLKKYGKVVYRRNDQKSPA 120

Query: 121 AEIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AEIDDD+ESLSFAV+MAKV SDVKA+DI+VLFVKPLVYWT FFIIATAFSRPQIDAIGSR
Sbjct: 121 AEIDDDAESLSFAVAMAKVVSDVKASDIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSR 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           IRDLAEK+YG+ PSGD KPNSWTLLDFGDVV+HIFLPQQRAFYNLEEFYGNAT +ELPFE
Sbjct: 181 IRDLAEKEYGKVPSGDSKPNSWTLLDFGDVVVHIFLPQQRAFYNLEEFYGNATTIELPFE 240

Query: 241 NQRPF 245
           NQ PF
Sbjct: 241 NQPPF 245

The following BLAST results are available for this feature:

BLAST of CsaV3_4G007640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147757.1	1.1e-139	100.00	PREDICTED: protein Iojap, chloroplastic [Cucumis sativus] >KGN53523.1 hypothetic...	[more]
XP_023524638.1	1.5e-123	88.11	protein Iojap, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022942371.1	1.6e-122	87.30	protein Iojap, chloroplastic [Cucurbita moschata]	[more]
XP_022982446.1	1.4e-121	87.30	protein Iojap, chloroplastic [Cucurbita maxima]	[more]
XP_022136946.1	5.4e-118	86.29	protein Iojap, chloroplastic [Momordica charantia]	[more]

BLAST of CsaV3_4G007640 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12930.1	1.7e-78	62.24	Lojap-related protein	[more]

BLAST of CsaV3_4G007640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LDY9\|IOJAC_ARATH	3.1e-77	62.24	Protein Iojap, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IJ PE=2 SV=1	[more]
sp\|Q41822\|IOJAP_MAIZE	1.2e-55	65.41	Protein Iojap, chloroplastic OS=Zea mays OX=4577 GN=Ij PE=1 SV=1	[more]
sp\|P73658\|IOJAP_SYNY3	1.3e-14	40.59	Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]
sp\|Q97P97\|IOJAP_STRPN	2.5e-10	36.54	Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain A...	[more]
sp\|Q9KD89\|IOJAP_BACHD	3.6e-09	33.63	Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DS...	[more]

BLAST of CsaV3_4G007640 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVG5\|A0A0A0KVG5_CUCSA	7.3e-140	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G064060 PE=3 SV=1	[more]
tr\|A0A1Q3B819\|A0A1Q3B819_CEPFO	2.7e-86	65.32	Oligomerisation domain-containing protein OS=Cephalotus follicularis OX=3775 GN=...	[more]
tr\|V4VN54\|V4VN54_9ROSI	2.3e-85	66.12	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021874mg PE=3 ...	[more]
tr\|A0A2K1YK83\|A0A2K1YK83_POPTR	3.0e-85	66.94	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G142900v3 PE=...	[more]
tr\|A0A2H5QE26\|A0A2H5QE26_CITUN	6.8e-85	66.12	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_220920 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004394	Iojap/RsfS/C7orf30

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0090071	negative regulation of ribosome biogenesis
biological_process	GO:0017148	negative regulation of translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043023	ribosomal large subunit binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G007640.1	CsaV3_4G007640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.460.10		coord: 127..242 e-value: 2.4E-25 score: 90.4
None	No IPR available	PFAM	PF02410	RsfS	coord: 135..228 e-value: 2.2E-19 score: 69.5
None	No IPR available	PANTHER	PTHR21043:SF1	PROTEIN IOJAP, CHLOROPLASTIC	coord: 80..243
None	No IPR available	SUPERFAMILY	SSF81301	Nucleotidyltransferase	coord: 129..238
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	TIGRFAM	TIGR00090	TIGR00090	coord: 135..228 e-value: 1.3E-20 score: 71.4
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	PANTHER	PTHR21043	IOJAP SUPERFAMILY ORTHOLOG	coord: 80..243
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	HAMAP	MF_01477	Iojap_RsfS	coord: 126..229 score: 18.467

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G007640	CSPI04G07420	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G007640	Cucsa.179780	Cucumber (Gy14) v1	cgycucB289
CsaV3_4G007640	CmaCh04G006310	Cucurbita maxima (Rimu)	cmacucB0841
CsaV3_4G007640	CsGy4G007300	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G007640	Cla005416	Watermelon (97103) v1	cucwmB323
CsaV3_4G007640	MELO3C016177	Melon (DHL92) v3.5.1	cucmeB317
CsaV3_4G007640	ClCG07G010660	Watermelon (Charleston Gray)	cucwcgB343
CsaV3_4G007640	MELO3C016177.2	Melon (DHL92) v3.6.1	cucmedB309
CsaV3_4G007640	Cla97C07G137410	Watermelon (97103) v2	cucwmbB329
CsaV3_4G007640	Bhi01G002410	Wax gourd	cucwgoB370

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G007640	Watermelon (97103) v2	cucwmbB327
CsaV3_4G007640	Wax gourd	cucwgoB388
CsaV3_4G007640	Silver-seed gourd	carcucB0052
CsaV3_4G007640	Silver-seed gourd	carcucB0689
CsaV3_4G007640	Cucurbita maxima (Rimu)	cmacucB0393
CsaV3_4G007640	Cucurbita moschata (Rifu)	cmocucB0388
CsaV3_4G007640	Cucurbita moschata (Rifu)	cmocucB0827
CsaV3_4G007640	Cucurbita pepo (Zucchini)	cpecucB0266
CsaV3_4G007640	Cucurbita pepo (Zucchini)	cpecucB0496
CsaV3_4G007640	Bottle gourd (USVL1VR-Ls)	cuclsiB323
CsaV3_4G007640	Bottle gourd (USVL1VR-Ls)	cuclsiB333
CsaV3_4G007640	Melon (DHL92) v3.5.1	cucmeB306
CsaV3_4G007640	Melon (DHL92) v3.6.1	cucmedB298
CsaV3_4G007640	Watermelon (Charleston Gray)	cucwcgB339
CsaV3_4G007640	Watermelon (97103) v1	cucwmB321