CmaCh04G006310 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGTACCCGAATAAATAGTACTGATTTGAGAAATTGATACTGCTTCGATGTTGTAAAATATCTTCCCCCACGGTGTCCCAGTGTTTCCTTTCTGCACGAAACGAGGTAGGAACGAGCATGGCGTTATCCATTGTCTTATCTCTTCACGGTGCCGGCGCCGTGACCTCGTTCGGCGGCGAGTTTCGGCAACTGGGTCACGATTATTTCAGAGTTTCCGGAAGACCCAGAAAACAATTTTGGTGCTCATGTTGGAATGGGTCCTCTTTTTCATCCCGAAACTGCATTTGGAAGATACCTTCTTCCCATAACTTCCATTTGAAGTCTATGGAGTCTTCTCCGCTGTTTTCCGTCGGAAAAGAAGCTGAAGATAGCTTTTTATCGGTACTGTTGTTTTGAACTTTTCGGAACCAATATGGATCATGTTTTGTTGATGTATTTGGAAGATTGTTGTGTGGTTTTCTGGGTTTTCGTTGAGGGAGAACTTGATTGTTCGAAATGTTACCTTTCCCTTTGATTTCTGGAAGCTGAAGCTACTTAAGATTCAGGGTAGAAGCTTATCTAAATGAAATTTGTTATCAAACCTATGCAAAATTTGGATATCAGTTCTTAGGGAAATGTTTGATATTTTTGCTGTTATATATTGATTGACCCAATCAATCCTTTGTGGCAGAATATGAACGAGGATACGGATGATATGTATGATGATTTGTTCAAGAAACATGGGAATGTGGTATTCAAGAGAAATGATCAAAAGCCTCCTACTGCAGAAGTTGATGACGACGCAGAAAGCCTTTCATGTAAGCTTCTCCTGTCATTAGCAAGAACTAGAAATGGACATAAGTTTGCTGTGGATTTATGTTTTGTGTTCATGTCGTGTTTTTCCTGCTAAATACTCTGCTTCATCTTATGAGTATGATGGGTAGTCTTAGATAGTTTATCTTTATGGATTCCACCCGAGGGGCCCTTTCAATTGAAAAAGAGAGAGAACTCAGATTCATCCCGAAGAGATTGAACAAGCTTTTGTAAAAAAGTGTAACGGCCCAAACCCACCATTGGCAAATATTGTGACTTTCCCTTTCGAGCTTCCCCTTAAGGTTTATAAAAAACTTATGCTAGGGAGATGTTTCTACATCCTTATAGCTTCGTTCTCCTCCTCAACCGATGTGGTATCTGACAATCCACCCTTTTTCGAGGTCCAACGTCCTTACTAACGCTTATACCCTTCTCCAATCGATGTGGGATCCCTCCAATCCACCCCCCTTCGATGCCTAGCATCCTCTTGCTGGCACACCACCTTGTGCCCACCCCCCTCGAGGCTCAGCCTCCTCACTGGCACATCGTCCGATGTTTGGCTCTGATCCCATTTGTAAAGTCCAAGTCCACCACTAGCATATATTGTCTGCTTTGGCCCGTTATGTATTGCTATCAACCTCACAATTTCAAAACGCATCTGTTAGGGAGAGGTTTCCACATCATTATAAGGAATGCTTCGTTCCCCTCTCTAACCGATGTAGGATCTCACAATCCATCCCTCTTGGGAGCCAACGTCCTCGCTGGCATACCGCCTGGTGTCTGGCTCTGATACCATTTGTAACGACCCAAACCCACTGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTTCAAACTTCTACTCTGGGAGAGGTTTCCACACCCTTAAAAAAATGCTTCATTCTATTCTCCAACCGATGTGAGATCTCAGAAAAGGTTAAATCTCATTATCTCATGTTCTCAATAAGTAGAAAGAAAAAAAAAGGCTGGTCATTAGAATGACACAATACTGTCACATTTTCGACTTGTAAGCCCAAACATCCTTTATATATACCTAAATCCACAAGCTCCTACACATGAGTGAACGATCGGTACATAATACACACGTACCGTTTGCATGTACATTGTGATATCAAAACCTCTGTTACATGGAATGGTTGGTAAACTAACAATTCAATACTTATCTCTACAGTTGCTGTATCAATGGCGAAAGTTGCTAGCGACGTAAAGGCTGCCGATATCCGTGTTCTGTTTGTGAAACCTCTAGTCTATTGGACCCGATTTTTCATTATTGCAACGGCATTTTCTCGTCCTCAGATCGATGCTATCGGGTACCTACTACTTTTTTGGTTTATTGTTCTCTGACTGCCTCTACATATGAAGGTATTGCTTAAACTCACTATTCAATTGTATTTTGCAATGCAGATCCCGGATAAGAGATCTTGCTGAGAAGAAGTATGGTAGAAGTCCTTCTGGTGACGTAAAGCCAAATTCCTGGACATTATTGGACTTTGGTATGCACTATTTTCATTTAAATTTGTTTACTTAAACGAGGAAGATTAAGAACATAGAGTTTCTTTGTGTATTTGAGTTCACGGATGAATATTCAAATCTCTAATCTTTTACTTGTGAACCTAGTGCCTTAACTAGTTAAACTATGCTGAGATTTGATAGCTTCATAACCTCTTCTTAACTATAGGATCATTTCATAATGGACCGATCAAATTGTTCCCCTGTTGTTTGTTTTTGTTCTCAGGAGATGTGGTTATCCATATATTTCTACCCCAGCAAAGGGCATTCTACAACTTGGAAGAGTTTTACGGCAATGCAACTCCTGTGGAGCTACCGTTCGAAAACCAACAGCCGTTTTGA AGTACCCGAATAAATAGTACTGATTTGAGAAATTGATACTGCTTCGATGTTGTAAAATATCTTCCCCCACGGTGTCCCAGTGTTTCCTTTCTGCACGAAACGAGGTAGGAACGAGCATGGCGTTATCCATTGTCTTATCTCTTCACGGTGCCGGCGCCGTGACCTCGTTCGGCGGCGAGTTTCGGCAACTGGGTCACGATTATTTCAGAGTTTCCGGAAGACCCAGAAAACAATTTTGGTGCTCATGTTGGAATGGGTCCTCTTTTTCATCCCGAAACTGCATTTGGAAGATACCTTCTTCCCATAACTTCCATTTGAAGTCTATGGAGTCTTCTCCGCTGTTTTCCGTCGGAAAAGAAGCTGAAGATAGCTTTTTATCGAATATGAACGAGGATACGGATGATATGTATGATGATTTGTTCAAGAAACATGGGAATGTGGTATTCAAGAGAAATGATCAAAAGCCTCCTACTGCAGAAGTTGATGACGACGCAGAAAGCCTTTCATTTGCTGTATCAATGGCGAAAGTTGCTAGCGACGTAAAGGCTGCCGATATCCGTGTTCTGTTTGTGAAACCTCTAGTCTATTGGACCCGATTTTTCATTATTGCAACGGCATTTTCTCGTCCTCAGATCGATGCTATCGGATCCCGGATAAGAGATCTTGCTGAGAAGAAGTATGGTAGAAGTCCTTCTGGTGACGTAAAGCCAAATTCCTGGACATTATTGGACTTTGGAGATGTGGTTATCCATATATTTCTACCCCAGCAAAGGGCATTCTACAACTTGGAAGAGTTTTACGGCAATGCAACTCCTGTGGAGCTACCGTTCGAAAACCAACAGCCGTTTTGA ATGGCGTTATCCATTGTCTTATCTCTTCACGGTGCCGGCGCCGTGACCTCGTTCGGCGGCGAGTTTCGGCAACTGGGTCACGATTATTTCAGAGTTTCCGGAAGACCCAGAAAACAATTTTGGTGCTCATGTTGGAATGGGTCCTCTTTTTCATCCCGAAACTGCATTTGGAAGATACCTTCTTCCCATAACTTCCATTTGAAGTCTATGGAGTCTTCTCCGCTGTTTTCCGTCGGAAAAGAAGCTGAAGATAGCTTTTTATCGAATATGAACGAGGATACGGATGATATGTATGATGATTTGTTCAAGAAACATGGGAATGTGGTATTCAAGAGAAATGATCAAAAGCCTCCTACTGCAGAAGTTGATGACGACGCAGAAAGCCTTTCATTTGCTGTATCAATGGCGAAAGTTGCTAGCGACGTAAAGGCTGCCGATATCCGTGTTCTGTTTGTGAAACCTCTAGTCTATTGGACCCGATTTTTCATTATTGCAACGGCATTTTCTCGTCCTCAGATCGATGCTATCGGATCCCGGATAAGAGATCTTGCTGAGAAGAAGTATGGTAGAAGTCCTTCTGGTGACGTAAAGCCAAATTCCTGGACATTATTGGACTTTGGAGATGTGGTTATCCATATATTTCTACCCCAGCAAAGGGCATTCTACAACTTGGAAGAGTTTTACGGCAATGCAACTCCTGTGGAGCTACCGTTCGAAAACCAACAGCCGTTTTGA MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIPSSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPTAEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQQPF
BLAST of CmaCh04G006310 vs. Swiss-Prot
Match: IOJAC_ARATH (Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2 SV=1) HSP 1 Score: 289.7 bits (740), Expect = 3.1e-77 Identity = 145/200 (72.50%), Postives = 167/200 (83.50%), Query Frame = 1
BLAST of CmaCh04G006310 vs. Swiss-Prot
Match: IOJAP_MAIZE (Protein Iojap, chloroplastic OS=Zea mays GN=Ij PE=1 SV=1) HSP 1 Score: 220.7 bits (561), Expect = 1.8e-56 Identity = 106/159 (66.67%), Postives = 126/159 (79.25%), Query Frame = 1
BLAST of CmaCh04G006310 vs. Swiss-Prot
Match: IOJAP_SYNY3 (Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsfS PE=1 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 3.3e-15 Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 1
BLAST of CmaCh04G006310 vs. Swiss-Prot
Match: IOJAP_STRPN (Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rsfS PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 4.2e-10 Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1
BLAST of CmaCh04G006310 vs. Swiss-Prot
Match: IOJAP_BACHD (Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rsfS PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 4.7e-09 Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1
BLAST of CmaCh04G006310 vs. TrEMBL
Match: A0A0A0KVG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064060 PE=3 SV=1) HSP 1 Score: 441.0 bits (1133), Expect = 9.2e-121 Identity = 213/244 (87.30%), Postives = 227/244 (93.03%), Query Frame = 1
BLAST of CmaCh04G006310 vs. TrEMBL
Match: V4VN54_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021874mg PE=3 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 3.0e-87 Identity = 167/245 (68.16%), Postives = 193/245 (78.78%), Query Frame = 1
BLAST of CmaCh04G006310 vs. TrEMBL
Match: A0A067E099_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025843mg PE=3 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 9.6e-86 Identity = 166/245 (67.76%), Postives = 191/245 (77.96%), Query Frame = 1
BLAST of CmaCh04G006310 vs. TrEMBL
Match: B9I0I6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14610g PE=3 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 2.1e-85 Identity = 166/245 (67.76%), Postives = 190/245 (77.55%), Query Frame = 1
BLAST of CmaCh04G006310 vs. TrEMBL
Match: B9GK05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s46280g PE=3 SV=2) HSP 1 Score: 318.9 bits (816), Expect = 5.3e-84 Identity = 165/245 (67.35%), Postives = 187/245 (76.33%), Query Frame = 1
BLAST of CmaCh04G006310 vs. TAIR10
Match: AT3G12930.1 (AT3G12930.1 Lojap-related protein) HSP 1 Score: 289.7 bits (740), Expect = 1.7e-78 Identity = 145/200 (72.50%), Postives = 167/200 (83.50%), Query Frame = 1
BLAST of CmaCh04G006310 vs. NCBI nr
Match: gi|449460046|ref|XP_004147757.1| (PREDICTED: protein Iojap, chloroplastic [Cucumis sativus]) HSP 1 Score: 441.0 bits (1133), Expect = 1.3e-120 Identity = 213/244 (87.30%), Postives = 227/244 (93.03%), Query Frame = 1
BLAST of CmaCh04G006310 vs. NCBI nr
Match: gi|567897132|ref|XP_006441054.1| (hypothetical protein CICLE_v10021874mg [Citrus clementina]) HSP 1 Score: 329.7 bits (844), Expect = 4.3e-87 Identity = 167/245 (68.16%), Postives = 193/245 (78.78%), Query Frame = 1
BLAST of CmaCh04G006310 vs. NCBI nr
Match: gi|568848502|ref|XP_006478047.1| (PREDICTED: protein Iojap, chloroplastic [Citrus sinensis]) HSP 1 Score: 325.9 bits (834), Expect = 6.2e-86 Identity = 167/245 (68.16%), Postives = 191/245 (77.96%), Query Frame = 1
BLAST of CmaCh04G006310 vs. NCBI nr
Match: gi|641828118|gb|KDO47280.1| (hypothetical protein CISIN_1g025843mg [Citrus sinensis]) HSP 1 Score: 324.7 bits (831), Expect = 1.4e-85 Identity = 166/245 (67.76%), Postives = 191/245 (77.96%), Query Frame = 1
BLAST of CmaCh04G006310 vs. NCBI nr
Match: gi|566195504|ref|XP_002317019.2| (hypothetical protein POPTR_0011s14610g [Populus trichocarpa]) HSP 1 Score: 323.6 bits (828), Expect = 3.1e-85 Identity = 166/245 (67.76%), Postives = 190/245 (77.55%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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