CmaCh04G006310 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G006310
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProtein Iojap/ribosomal silencing factor RsfS
LocationCma_Chr04 : 3239660 .. 3242322 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTACCCGAATAAATAGTACTGATTTGAGAAATTGATACTGCTTCGATGTTGTAAAATATCTTCCCCCACGGTGTCCCAGTGTTTCCTTTCTGCACGAAACGAGGTAGGAACGAGCATGGCGTTATCCATTGTCTTATCTCTTCACGGTGCCGGCGCCGTGACCTCGTTCGGCGGCGAGTTTCGGCAACTGGGTCACGATTATTTCAGAGTTTCCGGAAGACCCAGAAAACAATTTTGGTGCTCATGTTGGAATGGGTCCTCTTTTTCATCCCGAAACTGCATTTGGAAGATACCTTCTTCCCATAACTTCCATTTGAAGTCTATGGAGTCTTCTCCGCTGTTTTCCGTCGGAAAAGAAGCTGAAGATAGCTTTTTATCGGTACTGTTGTTTTGAACTTTTCGGAACCAATATGGATCATGTTTTGTTGATGTATTTGGAAGATTGTTGTGTGGTTTTCTGGGTTTTCGTTGAGGGAGAACTTGATTGTTCGAAATGTTACCTTTCCCTTTGATTTCTGGAAGCTGAAGCTACTTAAGATTCAGGGTAGAAGCTTATCTAAATGAAATTTGTTATCAAACCTATGCAAAATTTGGATATCAGTTCTTAGGGAAATGTTTGATATTTTTGCTGTTATATATTGATTGACCCAATCAATCCTTTGTGGCAGAATATGAACGAGGATACGGATGATATGTATGATGATTTGTTCAAGAAACATGGGAATGTGGTATTCAAGAGAAATGATCAAAAGCCTCCTACTGCAGAAGTTGATGACGACGCAGAAAGCCTTTCATGTAAGCTTCTCCTGTCATTAGCAAGAACTAGAAATGGACATAAGTTTGCTGTGGATTTATGTTTTGTGTTCATGTCGTGTTTTTCCTGCTAAATACTCTGCTTCATCTTATGAGTATGATGGGTAGTCTTAGATAGTTTATCTTTATGGATTCCACCCGAGGGGCCCTTTCAATTGAAAAAGAGAGAGAACTCAGATTCATCCCGAAGAGATTGAACAAGCTTTTGTAAAAAAGTGTAACGGCCCAAACCCACCATTGGCAAATATTGTGACTTTCCCTTTCGAGCTTCCCCTTAAGGTTTATAAAAAACTTATGCTAGGGAGATGTTTCTACATCCTTATAGCTTCGTTCTCCTCCTCAACCGATGTGGTATCTGACAATCCACCCTTTTTCGAGGTCCAACGTCCTTACTAACGCTTATACCCTTCTCCAATCGATGTGGGATCCCTCCAATCCACCCCCCTTCGATGCCTAGCATCCTCTTGCTGGCACACCACCTTGTGCCCACCCCCCTCGAGGCTCAGCCTCCTCACTGGCACATCGTCCGATGTTTGGCTCTGATCCCATTTGTAAAGTCCAAGTCCACCACTAGCATATATTGTCTGCTTTGGCCCGTTATGTATTGCTATCAACCTCACAATTTCAAAACGCATCTGTTAGGGAGAGGTTTCCACATCATTATAAGGAATGCTTCGTTCCCCTCTCTAACCGATGTAGGATCTCACAATCCATCCCTCTTGGGAGCCAACGTCCTCGCTGGCATACCGCCTGGTGTCTGGCTCTGATACCATTTGTAACGACCCAAACCCACTGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTTCAAACTTCTACTCTGGGAGAGGTTTCCACACCCTTAAAAAAATGCTTCATTCTATTCTCCAACCGATGTGAGATCTCAGAAAAGGTTAAATCTCATTATCTCATGTTCTCAATAAGTAGAAAGAAAAAAAAAGGCTGGTCATTAGAATGACACAATACTGTCACATTTTCGACTTGTAAGCCCAAACATCCTTTATATATACCTAAATCCACAAGCTCCTACACATGAGTGAACGATCGGTACATAATACACACGTACCGTTTGCATGTACATTGTGATATCAAAACCTCTGTTACATGGAATGGTTGGTAAACTAACAATTCAATACTTATCTCTACAGTTGCTGTATCAATGGCGAAAGTTGCTAGCGACGTAAAGGCTGCCGATATCCGTGTTCTGTTTGTGAAACCTCTAGTCTATTGGACCCGATTTTTCATTATTGCAACGGCATTTTCTCGTCCTCAGATCGATGCTATCGGGTACCTACTACTTTTTTGGTTTATTGTTCTCTGACTGCCTCTACATATGAAGGTATTGCTTAAACTCACTATTCAATTGTATTTTGCAATGCAGATCCCGGATAAGAGATCTTGCTGAGAAGAAGTATGGTAGAAGTCCTTCTGGTGACGTAAAGCCAAATTCCTGGACATTATTGGACTTTGGTATGCACTATTTTCATTTAAATTTGTTTACTTAAACGAGGAAGATTAAGAACATAGAGTTTCTTTGTGTATTTGAGTTCACGGATGAATATTCAAATCTCTAATCTTTTACTTGTGAACCTAGTGCCTTAACTAGTTAAACTATGCTGAGATTTGATAGCTTCATAACCTCTTCTTAACTATAGGATCATTTCATAATGGACCGATCAAATTGTTCCCCTGTTGTTTGTTTTTGTTCTCAGGAGATGTGGTTATCCATATATTTCTACCCCAGCAAAGGGCATTCTACAACTTGGAAGAGTTTTACGGCAATGCAACTCCTGTGGAGCTACCGTTCGAAAACCAACAGCCGTTTTGA

mRNA sequence

AGTACCCGAATAAATAGTACTGATTTGAGAAATTGATACTGCTTCGATGTTGTAAAATATCTTCCCCCACGGTGTCCCAGTGTTTCCTTTCTGCACGAAACGAGGTAGGAACGAGCATGGCGTTATCCATTGTCTTATCTCTTCACGGTGCCGGCGCCGTGACCTCGTTCGGCGGCGAGTTTCGGCAACTGGGTCACGATTATTTCAGAGTTTCCGGAAGACCCAGAAAACAATTTTGGTGCTCATGTTGGAATGGGTCCTCTTTTTCATCCCGAAACTGCATTTGGAAGATACCTTCTTCCCATAACTTCCATTTGAAGTCTATGGAGTCTTCTCCGCTGTTTTCCGTCGGAAAAGAAGCTGAAGATAGCTTTTTATCGAATATGAACGAGGATACGGATGATATGTATGATGATTTGTTCAAGAAACATGGGAATGTGGTATTCAAGAGAAATGATCAAAAGCCTCCTACTGCAGAAGTTGATGACGACGCAGAAAGCCTTTCATTTGCTGTATCAATGGCGAAAGTTGCTAGCGACGTAAAGGCTGCCGATATCCGTGTTCTGTTTGTGAAACCTCTAGTCTATTGGACCCGATTTTTCATTATTGCAACGGCATTTTCTCGTCCTCAGATCGATGCTATCGGATCCCGGATAAGAGATCTTGCTGAGAAGAAGTATGGTAGAAGTCCTTCTGGTGACGTAAAGCCAAATTCCTGGACATTATTGGACTTTGGAGATGTGGTTATCCATATATTTCTACCCCAGCAAAGGGCATTCTACAACTTGGAAGAGTTTTACGGCAATGCAACTCCTGTGGAGCTACCGTTCGAAAACCAACAGCCGTTTTGA

Coding sequence (CDS)

ATGGCGTTATCCATTGTCTTATCTCTTCACGGTGCCGGCGCCGTGACCTCGTTCGGCGGCGAGTTTCGGCAACTGGGTCACGATTATTTCAGAGTTTCCGGAAGACCCAGAAAACAATTTTGGTGCTCATGTTGGAATGGGTCCTCTTTTTCATCCCGAAACTGCATTTGGAAGATACCTTCTTCCCATAACTTCCATTTGAAGTCTATGGAGTCTTCTCCGCTGTTTTCCGTCGGAAAAGAAGCTGAAGATAGCTTTTTATCGAATATGAACGAGGATACGGATGATATGTATGATGATTTGTTCAAGAAACATGGGAATGTGGTATTCAAGAGAAATGATCAAAAGCCTCCTACTGCAGAAGTTGATGACGACGCAGAAAGCCTTTCATTTGCTGTATCAATGGCGAAAGTTGCTAGCGACGTAAAGGCTGCCGATATCCGTGTTCTGTTTGTGAAACCTCTAGTCTATTGGACCCGATTTTTCATTATTGCAACGGCATTTTCTCGTCCTCAGATCGATGCTATCGGATCCCGGATAAGAGATCTTGCTGAGAAGAAGTATGGTAGAAGTCCTTCTGGTGACGTAAAGCCAAATTCCTGGACATTATTGGACTTTGGAGATGTGGTTATCCATATATTTCTACCCCAGCAAAGGGCATTCTACAACTTGGAAGAGTTTTACGGCAATGCAACTCCTGTGGAGCTACCGTTCGAAAACCAACAGCCGTTTTGA

Protein sequence

MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIPSSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPTAEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQQPF
BLAST of CmaCh04G006310 vs. Swiss-Prot
Match: IOJAC_ARATH (Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 3.1e-77
Identity = 145/200 (72.50%), Postives = 167/200 (83.50%), Query Frame = 1

Query: 43  SCWNGSSFSSR-NCIWKIPSSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDL 102
           SC +    SS  NC W++  S    L S+ +S  F+VGKEAED FLSN++EDTD+M+DDL
Sbjct: 36  SCLSNRDLSSPYNCCWRL--SRGKILTSLSNSRKFAVGKEAEDGFLSNVSEDTDEMFDDL 95

Query: 103 FKKHGNVVFKRNDQKPPTAEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRF 162
           F K+G VVF+  D K PTAEVDDDAESL+FAV +AKVASDVKA DI+VLFVKPLVYWTRF
Sbjct: 96  FNKYGKVVFRSTDVKSPTAEVDDDAESLAFAVELAKVASDVKAGDIKVLFVKPLVYWTRF 155

Query: 163 FIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAF 222
           FIIATAFSRPQIDAIGSR+RDLAEKKYG+  +GDVKPNSWTLLDFGDVVIH+FLP QR F
Sbjct: 156 FIIATAFSRPQIDAIGSRMRDLAEKKYGKVANGDVKPNSWTLLDFGDVVIHLFLPPQRTF 215

Query: 223 YNLEEFYGNATPVELPFENQ 242
           YNLE+FYGNA  +ELPFE+Q
Sbjct: 216 YNLEDFYGNAMQIELPFEDQ 233

BLAST of CmaCh04G006310 vs. Swiss-Prot
Match: IOJAP_MAIZE (Protein Iojap, chloroplastic OS=Zea mays GN=Ij PE=1 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.8e-56
Identity = 106/159 (66.67%), Postives = 126/159 (79.25%), Query Frame = 1

Query: 88  SNMN----EDTDDMYDDLFKKHGNVVFKRNDQKPPTAEVDDDAESLSFAVSMAKVASDVK 147
           SN+N    +D D + +DL K+HG VV+       PT E DDDAE LSFAVS+AK AS++K
Sbjct: 69  SNVNFGRGDDADKLLEDLLKQHGEVVYSSGGPPDPTVEADDDAECLSFAVSLAKAASEIK 128

Query: 148 AADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTL 207
           A DIRVL V+ LVYWTRFFII TAFS  QIDAI S++RD+ EK++ +  SGD KPNSWTL
Sbjct: 129 ATDIRVLCVRRLVYWTRFFIILTAFSNAQIDAISSKMRDIGEKQFSKVASGDTKPNSWTL 188

Query: 208 LDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQQ 243
           LDFGDVV+HIFLPQQRAFYNLEEFYGNATP+ELPF+ Q+
Sbjct: 189 LDFGDVVVHIFLPQQRAFYNLEEFYGNATPIELPFDTQR 227

BLAST of CmaCh04G006310 vs. Swiss-Prot
Match: IOJAP_SYNY3 (Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsfS PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.3e-15
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 1

Query: 112 RNDQKPPTAEVDD----DAESLSFAV-SMAKVASDVKAADIRVLFVKPLVYWTRFFIIAT 171
           R D  PPT  V+     DA +    V ++A+ A + KA D+ +L V  + Y   +F+I T
Sbjct: 6   RFDAYPPTLTVNPIVPADAPATEHLVWTIAQAAEERKAGDLVILKVTDVSYLADYFVICT 65

Query: 172 AFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNS---WTLLDFGDVVIHIFLPQQRAFYN 231
            FSR Q+ AI   I    E  +G+ P+   + NS   W L DFGDV++H F+P++R FY 
Sbjct: 66  GFSRTQVRAIADNIEKQVELVHGQLPT-HTEGNSESIWVLQDFGDVLVHTFMPEEREFYK 125

BLAST of CmaCh04G006310 vs. Swiss-Prot
Match: IOJAP_STRPN (Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rsfS PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.2e-10
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1

Query: 135 MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRD-LAEKKY-GRSP 194
           + K A + +A DI  L V+ L   T + +I ++ +  Q+DAI + IR+ +A+  + G   
Sbjct: 10  VVKAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANIREKVAQAGFKGSHV 69

Query: 195 SGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVEL 237
            GD     W LLD G VV+HIF  + RA YNLE+ +  A  V++
Sbjct: 70  EGDAA-GGWVLLDLGAVVVHIFSEEMRAHYNLEKLWHEANSVDI 112

BLAST of CmaCh04G006310 vs. Swiss-Prot
Match: IOJAP_BACHD (Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rsfS PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.7e-09
Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1

Query: 127 ESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEK 186
           E L  AV+      D KA  +  L +K +     FF+I    S  Q+ AI   ++ +A++
Sbjct: 5   ELLQLAVN---AVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQE 64

Query: 187 KYGRSPSGD-VKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVEL 237
           +       +  +   W L+D GDVV+H+F   +RA+YNLE+ +G+A  VEL
Sbjct: 65  QGIEIKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPTVEL 112

BLAST of CmaCh04G006310 vs. TrEMBL
Match: A0A0A0KVG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064060 PE=3 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 9.2e-121
Identity = 213/244 (87.30%), Postives = 227/244 (93.03%), Query Frame = 1

Query: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60
           MALS  LSLHGAGA T FG E RQLGHDYF V  RPRKQ +CSCWNGS F  RNC+W++P
Sbjct: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60

Query: 61  SSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPTA 120
           S +NFHLKSMESSPLF+VG EAED FLSNMN++TDDMYD+LFKK+GNVVFK NDQKPP+A
Sbjct: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDD+ESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240
           RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240

Query: 241 QQPF 245
           Q+PF
Sbjct: 241 QRPF 244

BLAST of CmaCh04G006310 vs. TrEMBL
Match: V4VN54_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021874mg PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 3.0e-87
Identity = 167/245 (68.16%), Postives = 193/245 (78.78%), Query Frame = 1

Query: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60
           M  S  LSL GA + T F  EF  LG    ++S +PRK     C NG    +R C W+IP
Sbjct: 1   MIASATLSLAGAVSGTRFTCEFHPLGRLEAKLSHKPRKHVEWFCINGHHLLNRKCFWQIP 60

Query: 61  SSHN-FHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPT 120
            S N  + K  +    F+ GK+AEDS LSN++EDTD+M+D+L KK+G VV++RNDQK PT
Sbjct: 61  RSRNSINFKPRDLPLHFAYGKDAEDSSLSNVSEDTDEMFDNLLKKYGKVVYRRNDQKSPT 120

Query: 121 AEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AE+DDDAESLSFAV+MA+V SDVKAADI+VLFVKPLVYWT FFIIATAFSRPQIDAIGSR
Sbjct: 121 AEIDDDAESLSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSR 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           IRDLAEK+YG+ PSGD KPNSWTLLDFGDVV+HIFLPQQR FYNLEEFYGNAT +ELPFE
Sbjct: 181 IRDLAEKEYGKVPSGDSKPNSWTLLDFGDVVVHIFLPQQRVFYNLEEFYGNATTIELPFE 240

Query: 241 NQQPF 245
           NQ PF
Sbjct: 241 NQPPF 245

BLAST of CmaCh04G006310 vs. TrEMBL
Match: A0A067E099_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025843mg PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 9.6e-86
Identity = 166/245 (67.76%), Postives = 191/245 (77.96%), Query Frame = 1

Query: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60
           M  S  LSL GA + T F  EF  LG    ++S +PRK     C NG    +  C W+IP
Sbjct: 1   MIASATLSLAGAVSGTRFTCEFHPLGRLETKLSHKPRKHVEWFCINGHHLLNCKCFWQIP 60

Query: 61  SSHN-FHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPT 120
            S N  + K  +    F+ GK+AEDS LSN++EDTD+M+D+L  K+G VV++RNDQK P 
Sbjct: 61  RSRNSINFKPRDLPLHFAYGKDAEDSSLSNVSEDTDEMFDNLLNKYGKVVYRRNDQKSPA 120

Query: 121 AEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AE+DDDAESLSFAV+MA+V SDVKAADI+VLFVKPLVYWT FFIIATAFSRPQIDAIGSR
Sbjct: 121 AEIDDDAESLSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSR 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           IRDLAEK+YG+ PSGD KPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNAT +ELPFE
Sbjct: 181 IRDLAEKEYGKVPSGDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATTIELPFE 240

Query: 241 NQQPF 245
           NQ PF
Sbjct: 241 NQPPF 245

BLAST of CmaCh04G006310 vs. TrEMBL
Match: B9I0I6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14610g PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.1e-85
Identity = 166/245 (67.76%), Postives = 190/245 (77.55%), Query Frame = 1

Query: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQF-WCSCWNGSSFSSRNCIWKI 60
           MA+S  LS+ GAGA T F G+F+QLG    R+S +PRK   W   +         C W+ 
Sbjct: 1   MAVSTALSIAGAGAGTRFSGDFQQLGRVETRLSQKPRKHSGWLCLYRHQLPHYYKCFWQE 60

Query: 61  PSSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPT 120
             +     K      + ++ K+++D FLSN+ EDTD+M+DDLF K+G VVF+ ND KPPT
Sbjct: 61  SRTEKLSFKQ-----ILALRKDSDDGFLSNV-EDTDEMFDDLFNKYGKVVFRSNDNKPPT 120

Query: 121 AEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AEVDDDAESLSFAV MAKVASDVKA+DIRVLFVKPLVYWTRFFIIATAFSRPQIDAI SR
Sbjct: 121 AEVDDDAESLSFAVEMAKVASDVKASDIRVLFVKPLVYWTRFFIIATAFSRPQIDAINSR 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           +RDLAEKKYG+ PSGD KPNSWTLLDFGDVVIHIFLP QRAFYNLEEFYGNATP+ELPFE
Sbjct: 181 MRDLAEKKYGKVPSGDTKPNSWTLLDFGDVVIHIFLPPQRAFYNLEEFYGNATPIELPFE 239

Query: 241 NQQPF 245
           NQ PF
Sbjct: 241 NQPPF 239

BLAST of CmaCh04G006310 vs. TrEMBL
Match: B9GK05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s46280g PE=3 SV=2)

HSP 1 Score: 318.9 bits (816), Expect = 5.3e-84
Identity = 165/245 (67.35%), Postives = 187/245 (76.33%), Query Frame = 1

Query: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSR-NCIWKI 60
           MA+S  LS+ G GA T F GEF+ LG    R+S +PRK   C C+          C W  
Sbjct: 1   MAVSPALSIAGVGAGTRFSGEFKLLGRVETRLSQKPRKHSGCLCFYRHQLPRYYKCFW-- 60

Query: 61  PSSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPT 120
              H F  + +      ++ K+ +DSFLSN+ EDTD+M+DDLF K+G VVF  ND+KPPT
Sbjct: 61  ---HEFRTEKLSLKESLALRKDHDDSFLSNV-EDTDEMFDDLFNKYGKVVFTSNDKKPPT 120

Query: 121 AEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AEVDDDAESLSFAV MAKVASDVKA+DI+VLFVKPLVYWTRFFIIATAFSRPQIDAI S+
Sbjct: 121 AEVDDDAESLSFAVEMAKVASDVKASDIKVLFVKPLVYWTRFFIIATAFSRPQIDAINSK 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           IRDLAEKKYG+ PSGD KPNSWTLLDFGDVVIHIFLP QR FYNLEEFYGNATP+ELP E
Sbjct: 181 IRDLAEKKYGKVPSGDRKPNSWTLLDFGDVVIHIFLPPQRDFYNLEEFYGNATPIELPLE 239

Query: 241 NQQPF 245
           NQ PF
Sbjct: 241 NQPPF 239

BLAST of CmaCh04G006310 vs. TAIR10
Match: AT3G12930.1 (AT3G12930.1 Lojap-related protein)

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-78
Identity = 145/200 (72.50%), Postives = 167/200 (83.50%), Query Frame = 1

Query: 43  SCWNGSSFSSR-NCIWKIPSSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDL 102
           SC +    SS  NC W++  S    L S+ +S  F+VGKEAED FLSN++EDTD+M+DDL
Sbjct: 36  SCLSNRDLSSPYNCCWRL--SRGKILTSLSNSRKFAVGKEAEDGFLSNVSEDTDEMFDDL 95

Query: 103 FKKHGNVVFKRNDQKPPTAEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRF 162
           F K+G VVF+  D K PTAEVDDDAESL+FAV +AKVASDVKA DI+VLFVKPLVYWTRF
Sbjct: 96  FNKYGKVVFRSTDVKSPTAEVDDDAESLAFAVELAKVASDVKAGDIKVLFVKPLVYWTRF 155

Query: 163 FIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAF 222
           FIIATAFSRPQIDAIGSR+RDLAEKKYG+  +GDVKPNSWTLLDFGDVVIH+FLP QR F
Sbjct: 156 FIIATAFSRPQIDAIGSRMRDLAEKKYGKVANGDVKPNSWTLLDFGDVVIHLFLPPQRTF 215

Query: 223 YNLEEFYGNATPVELPFENQ 242
           YNLE+FYGNA  +ELPFE+Q
Sbjct: 216 YNLEDFYGNAMQIELPFEDQ 233

BLAST of CmaCh04G006310 vs. NCBI nr
Match: gi|449460046|ref|XP_004147757.1| (PREDICTED: protein Iojap, chloroplastic [Cucumis sativus])

HSP 1 Score: 441.0 bits (1133), Expect = 1.3e-120
Identity = 213/244 (87.30%), Postives = 227/244 (93.03%), Query Frame = 1

Query: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60
           MALS  LSLHGAGA T FG E RQLGHDYF V  RPRKQ +CSCWNGS F  RNC+W++P
Sbjct: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60

Query: 61  SSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPTA 120
           S +NFHLKSMESSPLF+VG EAED FLSNMN++TDDMYD+LFKK+GNVVFK NDQKPP+A
Sbjct: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDD+ESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240
           RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFEN 240

Query: 241 QQPF 245
           Q+PF
Sbjct: 241 QRPF 244

BLAST of CmaCh04G006310 vs. NCBI nr
Match: gi|567897132|ref|XP_006441054.1| (hypothetical protein CICLE_v10021874mg [Citrus clementina])

HSP 1 Score: 329.7 bits (844), Expect = 4.3e-87
Identity = 167/245 (68.16%), Postives = 193/245 (78.78%), Query Frame = 1

Query: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60
           M  S  LSL GA + T F  EF  LG    ++S +PRK     C NG    +R C W+IP
Sbjct: 1   MIASATLSLAGAVSGTRFTCEFHPLGRLEAKLSHKPRKHVEWFCINGHHLLNRKCFWQIP 60

Query: 61  SSHN-FHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPT 120
            S N  + K  +    F+ GK+AEDS LSN++EDTD+M+D+L KK+G VV++RNDQK PT
Sbjct: 61  RSRNSINFKPRDLPLHFAYGKDAEDSSLSNVSEDTDEMFDNLLKKYGKVVYRRNDQKSPT 120

Query: 121 AEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AE+DDDAESLSFAV+MA+V SDVKAADI+VLFVKPLVYWT FFIIATAFSRPQIDAIGSR
Sbjct: 121 AEIDDDAESLSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSR 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           IRDLAEK+YG+ PSGD KPNSWTLLDFGDVV+HIFLPQQR FYNLEEFYGNAT +ELPFE
Sbjct: 181 IRDLAEKEYGKVPSGDSKPNSWTLLDFGDVVVHIFLPQQRVFYNLEEFYGNATTIELPFE 240

Query: 241 NQQPF 245
           NQ PF
Sbjct: 241 NQPPF 245

BLAST of CmaCh04G006310 vs. NCBI nr
Match: gi|568848502|ref|XP_006478047.1| (PREDICTED: protein Iojap, chloroplastic [Citrus sinensis])

HSP 1 Score: 325.9 bits (834), Expect = 6.2e-86
Identity = 167/245 (68.16%), Postives = 191/245 (77.96%), Query Frame = 1

Query: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60
           M  S  LSL GA + T F  EF  LG    ++S +PRK     C NG    +  C W+IP
Sbjct: 1   MIASATLSLAGAVSGTRFTCEFHPLGRLETKLSHKPRKHVEWFCINGHHLLNCKCFWQIP 60

Query: 61  SSHN-FHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPT 120
            S N  + K  +    FS GK+AEDS LSN++EDTD+M+D+L  K+G VV++RNDQK P 
Sbjct: 61  RSRNSINFKPRDLPLHFSYGKDAEDSSLSNVSEDTDEMFDNLLNKYGKVVYRRNDQKSPA 120

Query: 121 AEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AE+DDDAESLSFAV+MAKV SDVKA+DI+VLFVKPLVYWT FFIIATAFSRPQIDAIGSR
Sbjct: 121 AEIDDDAESLSFAVAMAKVVSDVKASDIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSR 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           IRDLAEK+YG+ PSGD KPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNAT +ELPFE
Sbjct: 181 IRDLAEKEYGKVPSGDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATTIELPFE 240

Query: 241 NQQPF 245
           NQ PF
Sbjct: 241 NQPPF 245

BLAST of CmaCh04G006310 vs. NCBI nr
Match: gi|641828118|gb|KDO47280.1| (hypothetical protein CISIN_1g025843mg [Citrus sinensis])

HSP 1 Score: 324.7 bits (831), Expect = 1.4e-85
Identity = 166/245 (67.76%), Postives = 191/245 (77.96%), Query Frame = 1

Query: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60
           M  S  LSL GA + T F  EF  LG    ++S +PRK     C NG    +  C W+IP
Sbjct: 1   MIASATLSLAGAVSGTRFTCEFHPLGRLETKLSHKPRKHVEWFCINGHHLLNCKCFWQIP 60

Query: 61  SSHN-FHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPT 120
            S N  + K  +    F+ GK+AEDS LSN++EDTD+M+D+L  K+G VV++RNDQK P 
Sbjct: 61  RSRNSINFKPRDLPLHFAYGKDAEDSSLSNVSEDTDEMFDNLLNKYGKVVYRRNDQKSPA 120

Query: 121 AEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AE+DDDAESLSFAV+MA+V SDVKAADI+VLFVKPLVYWT FFIIATAFSRPQIDAIGSR
Sbjct: 121 AEIDDDAESLSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSR 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           IRDLAEK+YG+ PSGD KPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNAT +ELPFE
Sbjct: 181 IRDLAEKEYGKVPSGDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATTIELPFE 240

Query: 241 NQQPF 245
           NQ PF
Sbjct: 241 NQPPF 245

BLAST of CmaCh04G006310 vs. NCBI nr
Match: gi|566195504|ref|XP_002317019.2| (hypothetical protein POPTR_0011s14610g [Populus trichocarpa])

HSP 1 Score: 323.6 bits (828), Expect = 3.1e-85
Identity = 166/245 (67.76%), Postives = 190/245 (77.55%), Query Frame = 1

Query: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQF-WCSCWNGSSFSSRNCIWKI 60
           MA+S  LS+ GAGA T F G+F+QLG    R+S +PRK   W   +         C W+ 
Sbjct: 1   MAVSTALSIAGAGAGTRFSGDFQQLGRVETRLSQKPRKHSGWLCLYRHQLPHYYKCFWQE 60

Query: 61  PSSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPT 120
             +     K      + ++ K+++D FLSN+ EDTD+M+DDLF K+G VVF+ ND KPPT
Sbjct: 61  SRTEKLSFKQ-----ILALRKDSDDGFLSNV-EDTDEMFDDLFNKYGKVVFRSNDNKPPT 120

Query: 121 AEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSR 180
           AEVDDDAESLSFAV MAKVASDVKA+DIRVLFVKPLVYWTRFFIIATAFSRPQIDAI SR
Sbjct: 121 AEVDDDAESLSFAVEMAKVASDVKASDIRVLFVKPLVYWTRFFIIATAFSRPQIDAINSR 180

Query: 181 IRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFE 240
           +RDLAEKKYG+ PSGD KPNSWTLLDFGDVVIHIFLP QRAFYNLEEFYGNATP+ELPFE
Sbjct: 181 MRDLAEKKYGKVPSGDTKPNSWTLLDFGDVVIHIFLPPQRAFYNLEEFYGNATPIELPFE 239

Query: 241 NQQPF 245
           NQ PF
Sbjct: 241 NQPPF 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IOJAC_ARATH3.1e-7772.50Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2 SV=1[more]
IOJAP_MAIZE1.8e-5666.67Protein Iojap, chloroplastic OS=Zea mays GN=Ij PE=1 SV=1[more]
IOJAP_SYNY33.3e-1539.06Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ... [more]
IOJAP_STRPN4.2e-1036.54Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain A... [more]
IOJAP_BACHD4.7e-0933.33Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DS... [more]
Match NameE-valueIdentityDescription
A0A0A0KVG5_CUCSA9.2e-12187.30Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064060 PE=3 SV=1[more]
V4VN54_9ROSI3.0e-8768.16Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021874mg PE=3 SV=1[more]
A0A067E099_CITSI9.6e-8667.76Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025843mg PE=3 SV=1[more]
B9I0I6_POPTR2.1e-8567.76Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14610g PE=3 SV=1[more]
B9GK05_POPTR5.3e-8467.35Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s46280g PE=3 SV=2[more]
Match NameE-valueIdentityDescription
AT3G12930.11.7e-7872.50 Lojap-related protein[more]
Match NameE-valueIdentityDescription
gi|449460046|ref|XP_004147757.1|1.3e-12087.30PREDICTED: protein Iojap, chloroplastic [Cucumis sativus][more]
gi|567897132|ref|XP_006441054.1|4.3e-8768.16hypothetical protein CICLE_v10021874mg [Citrus clementina][more]
gi|568848502|ref|XP_006478047.1|6.2e-8668.16PREDICTED: protein Iojap, chloroplastic [Citrus sinensis][more]
gi|641828118|gb|KDO47280.1|1.4e-8567.76hypothetical protein CISIN_1g025843mg [Citrus sinensis][more]
gi|566195504|ref|XP_002317019.2|3.1e-8567.76hypothetical protein POPTR_0011s14610g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004394Iojap/RsfS/C7orf30
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0090071 negative regulation of ribosome biogenesis
biological_process GO:0017148 negative regulation of translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
molecular_function GO:0043023 ribosomal large subunit binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G006310.1CmaCh04G006310.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004394Protein Iojap/ribosomal silencing factor RsfSHAMAPMF_01477Iojap_RsfScoord: 126..229
score: 18
IPR004394Protein Iojap/ribosomal silencing factor RsfSPANTHERPTHR21043IOJAP SUPERFAMILY ORTHOLOGcoord: 76..244
score: 6.8E
IPR004394Protein Iojap/ribosomal silencing factor RsfSTIGRFAMsTIGR00090TIGR00090coord: 135..228
score: 1.3
NoneNo IPR availableGENE3DG3DSA:3.30.460.10coord: 131..231
score: 1.1
NoneNo IPR availablePANTHERPTHR21043:SF1PROTEIN IOJAP, CHLOROPLASTICcoord: 76..244
score: 6.8E
NoneNo IPR availablePFAMPF02410RsfScoord: 135..228
score: 4.0
NoneNo IPR availableunknownSSF81301Nucleotidyltransferasecoord: 129..238
score: 9.65