Cucsa.179780 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.179780
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ribosomal silencing factor RsfS
Location	scaffold01233 : 155903 .. 159941 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGTGCCGGAACCTTGTTTGGCGCTGAGCTCCGGCAATTGGGTCACGATTATTTCGGAGTTTTCAAAAGACCCAGAAAACAAATTTTCTGCTCATGCTGGAATGGGTCTCCATTTCCTTACCGAAACTGCCTTTGGAGGGTACCCTCTGTCAATAACTTCCATTTGAAGTCAATGGAGTCCTCGCCATTGTTCGCCGTCGGAGGAGAAGCTGAAGATGGCTTTTTATCGGTATTTTCTTTTCATTTCCTTTGTTTGGAACTAACTTGAATTATGTTTCGTTAATATGTATTTGGAATAGATTTCGTTCTTGTTACTAATTGATGTGTGGTTTCTGGGATTTCGTTGAGGCATAACTTGATTGATCGAAATCTTACCTTTTTCTTTGTTCAAAATGGATGTTATTTGCTAAAAGAAAAGAGGCTTCTCTCTTATCTTTCCCCTTTATTTTTGGAGCTGAAGCTACTTGGGATTATGGGAGGAACCTTATCTACTTGGAAGTTATTTGCAAAAAGAAAAAGAAGCTCACTTATCTCTCTCTCTTTGTATTTTTTTTCCTTTTGCACTGGTTGTTTGAATGCTGCAGCTAATTGGGAATTGATAAGAACCTTGTCAAAATTAAGAAAGTTATTAGCAAAAACAACAGGAGCCCTCCTCCTTGGATCTACTGGGGAAGACTATTCTCAAAATGAGAGTAACTTGCAAAAGAAAATTAGTCTCTCCATCTCCCTCTTTCATATTCCCTTTACTTTGATCTTTGGATGATGCAGCTGCCTGAGAGGAGCTTCATCAAATCGGAAGTTTCAAAAGAAAGAAGAAATCTGTCTCTCTCTTTCTCTCTTCTGTAGTTTTCCTTGATAATGGTGGGATTGAGTTACTTTGAACTGTATTAAACATTCAGTATTGAGTACAGTGATTTAGCCTATGAATCATACTTTATGTTTCTTTACTGGGTTCTAAATGATGCTTTTTGTAAAAAGGAAACAAGAAACTGACGATTGAAGAGGCTGAATCCAAGACACTCTTTTGAATTGTTCTGGAACTTGTATGTTCATTTACTTGCTGATCTTCGTAGAAAAATCAAGTCATCATTATGTTTTCATTTTCAGACTCAAATTTAATTTGGATTTTGGTGAAGGAAAAAAAATACTAATCAAACCGATCTATACTAACTCTGGATATCAATTTATTTTAAATGATTGCCTTAGGGTAAAGATCGTAATGGTTTCTATTACACATTCTAAATGTCTGATATTTTTGTTGCTGTTGCACGTTACTGCAACTACTTGCGATACTTGCGATACTGTCAGACTCAAACTTAAATTTGGTATAAAGGAAAAAAAAATACTAATCAAACTGGTCTGCACTAACTTTTGATATTAATTTATTTTAAATGATTGCCATAGGGTAGAGATCTTGATGCATTTTATTGCGCATTTAAATGTCGGATGCTTTTTGTTGTGAAGTACTGCATTTGCTTGTGATATTGATCAACCCAGTCAATGATTTCTGGCAGAATATGAATGATGAAACCGATGACATGTATGATGAATTGTTCAAGAAATATGGGAATGTGGTATTCAAGAGCAATGACCAAAAGCCTCCCAGTGCAGAAATTGACAATGACTCGGAAAGCCTTTCATGTAAGTGATATCTCTTTACATTAGCAAGATCAAGAAGCAAACATAAGCATGTTGTGGACAAATCTGTTGTGTTCATGTGGTGATTTGCCTGCCAACTGCCTGCTTCATCTATGAGTATAATGAATAATCTTAGCTAATATATCTTAATTTGATATGGTTTCTAGTAGTGTTGTTGTTAAGTATTTAAACGAAAGGAATGGAACAATCTTATCATTCTTTGGTTGAATCAGTAACAGAAATGGGAAGTGGAATGGAAAAAATGATTTCCTTGGCATTTCCAGAGGTTTCTTTTCCCCTCTCATTTGATGTGAAATGGTTACGTACAAATTACATATCTATCCAAAAACAAGTGTAGATCGTCGAATCCACCTGGGCAGTCCTTTTAATTGGAGAAGTTGAGAGAATTCATATTCATTCTGAAGGGATTGAATAAGCCTTTTGGATGTGTACCATAGACAACAAAATAGCGAAAGAAAACAGTCTAAGGGCAGCGGAAGATGTGACCCTTCCTGTAGAAACTAAAAAACTGCTATCCAGTAGTTTCGAATCAGTTAAAAATGAATTTTGTTTCTCACACGCCACCAGGACACTCTAAGCTGTACATTACTACAAAAACCCTCAAAGAGCAATCAAAGATAGAAAACAATAGGTACCTCAAGTTTTCAACTTTTCAATAGGCAGAAAGCAACTATGGACGAACAATTAGTACATAATTAACATACGTATTTTGTCCAGTTATATTGTGAATTCAAAACTTCATTACATGGAATGATTCGTGAACTAATTTTCCAATGCTTATCTCTGTAGTTGCTGTATCAATGGCGAAGGTTGCAAGTGATGTAAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTATTGGACAAGATTTTTCATCATTGCAACAGCATTTTCTCGCCCTCAGATCGATGCTATTGGGTACTGCTGCCTTTTTGGTTTGTTGTCCTCTTATCGCTTGCAATAAGGAAATCTATATATGAAGGTTTTCCTTAAACTGATGTTCAATTATATTTTCCAATGCAGATCCCGAATAAGAGATCTTGCCGAGAAGAAGTATGGAAGAAGTCCTTCTGGTGATGTGAAGCCAAATTCCTGGACTTTGTTGGATTTTGGTATGCACTATTTGTATTTCACTTTGATGATAAATGAGTGTTCCGTTAGAGATGATGGATGCACCAGAAACCTGGACAGAGAACCAATTAGAAAGAAACAACTTGTGTTGAACTAATAGCTATACGAAAATACGTAGTATACCTAGAGGAAAAAAAAACTCCTGAAATGATCCTTCTAGGTACTAGTTCAAGCTCTTTGGTGGATGTTTCTAAATAGCAGCTTTTAGAGTGAGCAAAATTTTTCTGAGATTTAGTAGTAGGGATGGATGATGAACTTAATGTAAGTAGTGAGGCCATTTAATTTGGTGGCATCCCATTTATATGAAAAAGGAATTGATGTATAAATGTCCGTAGCGAAGATCTAAAGAGCATTAGATTCTAATCTCGTGAAGTACCAATGCTTCAATCTTTAAAAAAAACCATTTCAGATTAAGTCTATCAAAATGAAATGTGATTTTTCACCAATCAGAGCTCATCATTTAATATAGAGCGGATATGGCTTTGAGACCTCTTTGTGACTATAGGATCATTTTATCATCGCTTTATTATCGGTGTGCTATGCCTTTTTCCATATTATGTGTGAAGTCCATTTTGGAATTCAGTTAAGATATTAGTCCAAAATGTGCATCGATTGATCTTTGATACCGAAGAACTAAGAAGTAAAGCAAATTGCTGTGATGTTTTTTGTTCTCAGGAGATGTGGTTATCCATATTTTTCTACCCCAGCAGAGGGCATTCTATAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCGTTCGAAAACCAACGGCCGTTTTGAAGTAAAAACCGCAGCGGATTTCCCGCCGAGCAGCTGATGGTGAAGGAAAAATGCAGTTTGTTGGCAGCTGGTGAGGCAGATTGCTTATGTTTGTTGTGTCCTCTCATGAAAACAGCTACCATGTGAAGTGTTGCAGAAGCAGCTGCATGAGTTGGGAGTTCCAACTTCTGACTGCTTGAGGTTGAAGACAGAATCACTTGGCAGATGGTGGTATTATTGAGAGCCCTATCCCAAACTTTCTTCTGTCTCCTAACTCTCCCTTTCTCTTTCTCTTTCTCTTTCTCTCTCTTATGAATCACTGGTTTGATTTGAGATAGTTTTTAAGTAAAGTTAGTTGTTATGAATCTAGTTGGTTAGAAGGGGCCCTATTACTTACACCAATGAATTAAGATTCCATTACTAATTGGAGAAAACTTGTAGGAGAATTAAAATGAATTTGGTTTGGTC

mRNA sequence

CCGGTGCCGGAACCTTGTTTGGCGCTGAGCTCCGGCAATTGGGTCACGATTATTTCGGAGTTTTCAAAAGACCCAGAAAACAAATTTTCTGCTCATGCTGGAATGGGTCTCCATTTCCTTACCGAAACTGCCTTTGGAGGGTACCCTCTGTCAATAACTTCCATTTGAAGTCAATGGAGTCCTCGCCATTGTTCGCCGTCGGAGGAGAAGCTGAAGATGGCTTTTTATCGAATATGAATGATGAAACCGATGACATGTATGATGAATTGTTCAAGAAATATGGGAATGTGGTATTCAAGAGCAATGACCAAAAGCCTCCCAGTGCAGAAATTGACAATGACTCGGAAAGCCTTTCATTTGCTGTATCAATGGCGAAGGTTGCAAGTGATGTAAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTATTGGACAAGATTTTTCATCATTGCAACAGCATTTTCTCGCCCTCAGATCGATGCTATTGGATCCCGAATAAGAGATCTTGCCGAGAAGAAGTATGGAAGAAGTCCTTCTGGTGATGTGAAGCCAAATTCCTGGACTTTGTTGGATTTTGGAGATGTGGTTATCCATATTTTTCTACCCCAGCAGAGGGCATTCTATAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCGTTCGAAAACCAACGGCCGTTTTGAAGTAAAAACCGCAGCGGATTTCCCGCCGAGCAGCTGATGGTGAAGGAAAAATGCAGTTTGTTGGCAGCTGGTGAGGCAGATTGCTTATGTTTGTTGTGTCCTCTCATGAAAACAGCTACCATGTGAAGTGTTGCAGAAGCAGCTGCATGAGTTGGGAGTTCCAACTTCTGACTGCTTGAGGTTGAAGACAGAATCACTTGGCAGATGGTGGTATTATTGAGAGCCCTATCCCAAACTTTCTTCTGTCTCCTAActctccctttctctttctctttctctttctctctctTATGAATCACTGGTTTGATTTGAGATAGTTTTTAAGTAAAGTTAGTTGTTATGAATCTAGTTGGTTAGAAGGGGCCCTATTACTTACACCAATGAATTAAGATTCCATTACTAATTGGAGAAAACTTGTAGGAGAATTAAAATGAATTTGGTTTGGTC

Coding sequence (CDS)

ATGGAGTCCTCGCCATTGTTCGCCGTCGGAGGAGAAGCTGAAGATGGCTTTTTATCGAATATGAATGATGAAACCGATGACATGTATGATGAATTGTTCAAGAAATATGGGAATGTGGTATTCAAGAGCAATGACCAAAAGCCTCCCAGTGCAGAAATTGACAATGACTCGGAAAGCCTTTCATTTGCTGTATCAATGGCGAAGGTTGCAAGTGATGTAAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTATTGGACAAGATTTTTCATCATTGCAACAGCATTTTCTCGCCCTCAGATCGATGCTATTGGATCCCGAATAAGAGATCTTGCCGAGAAGAAGTATGGAAGAAGTCCTTCTGGTGATGTGAAGCCAAATTCCTGGACTTTGTTGGATTTTGGAGATGTGGTTATCCATATTTTTCTACCCCAGCAGAGGGCATTCTATAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCGTTCGAAAACCAACGGCCGTTTTGA

Protein sequence

MESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF*

Homology

[Close]

BLAST of Cucsa.179780 vs. Swiss-Prot
Match: IOJAC_ARATH (Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-73
Identity = 131/172 (76.16%), Postives = 155/172 (90.12%), Query Frame = 1


Query: 1   MESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESL 60
           + +S  FAVG EAEDGFLSN++++TD+M+D+LF KYG VVF+S D K P+AE+D+D+ESL
Sbjct: 62  LSNSRKFAVGKEAEDGFLSNVSEDTDEMFDDLFNKYGKVVFRSTDVKSPTAEVDDDAESL 121

Query: 61  SFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG 120
           +FAV +AKVASDVKA DI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSR+RDLAEKKYG
Sbjct: 122 AFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRDLAEKKYG 181

Query: 121 RSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQ 173
           +  +GDVKPNSWTLLDFGDVVIH+FLP QR FYNLE+FYGNA  +ELPFE+Q
Sbjct: 182 KVANGDVKPNSWTLLDFGDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFEDQ 233

[Close]

BLAST of Cucsa.179780 vs. Swiss-Prot
Match: IOJAP_MAIZE (Protein Iojap, chloroplastic OS=Zea mays GN=Ij PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.1e-55
Identity = 103/159 (64.78%), Postives = 127/159 (79.87%), Query Frame = 1


Query: 19  SNMN----DETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESLSFAVSMAKVASDVK 78
           SN+N    D+ D + ++L K++G VV+ S     P+ E D+D+E LSFAVS+AK AS++K
Sbjct: 69  SNVNFGRGDDADKLLEDLLKQHGEVVYSSGGPPDPTVEADDDAECLSFAVSLAKAASEIK 128

Query: 79  AADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTL 138
           A DIRVL V+ LVYWTRFFII TAFS  QIDAI S++RD+ EK++ +  SGD KPNSWTL
Sbjct: 129 ATDIRVLCVRRLVYWTRFFIILTAFSNAQIDAISSKMRDIGEKQFSKVASGDTKPNSWTL 188

Query: 139 LDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQR 174
           LDFGDVV+HIFLPQQRAFYNLEEFYGNATP+ELPF+ QR
Sbjct: 189 LDFGDVVVHIFLPQQRAFYNLEEFYGNATPIELPFDTQR 227

[Close]

BLAST of Cucsa.179780 vs. Swiss-Prot
Match: IOJAP_SYNY3 (Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsfS PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-14
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1


Query: 65  SMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPS 124
           ++A+ A + KA D+ +L V  + Y   +F+I T FSR Q+ AI   I    E  +G+ P+
Sbjct: 33  TIAQAAEERKAGDLVILKVTDVSYLADYFVICTGFSRTQVRAIADNIEKQVELVHGQLPT 92

Query: 125 GDVKPNS---WTLLDFGDVVIHIFLPQQRAFYNLEEFYGNA 163
              + NS   W L DFGDV++H F+P++R FY LE F+G+A
Sbjct: 93  -HTEGNSESIWVLQDFGDVLVHTFMPEEREFYKLEAFWGHA 132

[Close]

BLAST of Cucsa.179780 vs. Swiss-Prot
Match: IOJAP_STRPN (Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rsfS PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-10
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 1


Query: 55  NDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRD- 114
           N+ E L   V   K A + +A DI  L V+ L   T + +I ++ +  Q+DAI + IR+ 
Sbjct: 2   NEKELLELVV---KAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANIREK 61

Query: 115 LAEKKY-GRSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVEL 168
           +A+  + G    GD     W LLD G VV+HIF  + RA YNLE+ +  A  V++
Sbjct: 62  VAQAGFKGSHVEGDAA-GGWVLLDLGAVVVHIFSEEMRAHYNLEKLWHEANSVDI 112

[Close]

BLAST of Cucsa.179780 vs. Swiss-Prot
Match: IOJAP_BACHD (Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rsfS PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-09
Identity = 37/114 (32.46%), Postives = 61/114 (53.51%), Query Frame = 1


Query: 55  NDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDL 114
           ++ E L  AV+      D KA  +  L +K +     FF+I    S  Q+ AI   ++ +
Sbjct: 2   SNQELLQLAVN---AVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKV 61

Query: 115 AEKKYGRSPSGD-VKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVEL 168
           A+++       +  +   W L+D GDVV+H+F   +RA+YNLE+ +G+A  VEL
Sbjct: 62  AQEQGIEIKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPTVEL 112

[Close]

BLAST of Cucsa.179780 vs. TrEMBL
Match: A0A0A0KVG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064060 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 2.4e-94
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESL 60
           MESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEID+DSESL
Sbjct: 70  MESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDDDSESL 129

Query: 61  SFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG 120
           SFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG
Sbjct: 130 SFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG 189

Query: 121 RSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 176
           RSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 190 RSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 244

[Close]

BLAST of Cucsa.179780 vs. TrEMBL
Match: A0A061FAQ0_THECC (Lojap-related protein isoform 2 OS=Theobroma cacao GN=TCM_032424 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.9e-75
Identity = 140/171 (81.87%), Postives = 155/171 (90.64%), Query Frame = 1


Query: 5   PLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESLSFAV 64
           P  A G EA+D FLSN N++TD++ D+L KKYG VV + NDQK PSAE+D+D+ESLSFAV
Sbjct: 66  PFHAYGKEADDSFLSNANEDTDEILDDLLKKYGKVVLRKNDQKSPSAELDDDAESLSFAV 125

Query: 65  SMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPS 124
           +MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGS+IRDLAEKKYG+ PS
Sbjct: 126 AMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSKIRDLAEKKYGKIPS 185

Query: 125 GDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 176
           GD KPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNAT +ELP ENQ+PF
Sbjct: 186 GDTKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATLIELPSENQQPF 236

[Close]

BLAST of Cucsa.179780 vs. TrEMBL
Match: A0A0D2UYR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G355200 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.5e-75
Identity = 139/170 (81.76%), Postives = 155/170 (91.18%), Query Frame = 1


Query: 6   LFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESLSFAVS 65
           L+A G EA+D FLS +N++TD+M+D+L KKYG VVF+ ND+K PSAE+D+D+ESLSFAV 
Sbjct: 68  LYAYGKEADDAFLSKVNEDTDEMFDDLMKKYGEVVFRKNDRKSPSAELDDDAESLSFAVE 127

Query: 66  MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSG 125
           MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG+ PSG
Sbjct: 128 MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGKVPSG 187

Query: 126 DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 176
           D KPNSWTLLDFGDVV+HIFLPQQRAFYNLEEFYGNAT +ELP E Q PF
Sbjct: 188 DAKPNSWTLLDFGDVVVHIFLPQQRAFYNLEEFYGNATLIELPSETQPPF 237

[Close]

BLAST of Cucsa.179780 vs. TrEMBL
Match: B9I0I6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14610g PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 7.2e-75
Identity = 138/170 (81.18%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 6   LFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESLSFAVS 65
           + A+  +++DGFLSN+ D TD+M+D+LF KYG VVF+SND KPP+AE+D+D+ESLSFAV 
Sbjct: 71  ILALRKDSDDGFLSNVED-TDEMFDDLFNKYGKVVFRSNDNKPPTAEVDDDAESLSFAVE 130

Query: 66  MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSG 125
           MAKVASDVKA+DIRVLFVKPLVYWTRFFIIATAFSRPQIDAI SR+RDLAEKKYG+ PSG
Sbjct: 131 MAKVASDVKASDIRVLFVKPLVYWTRFFIIATAFSRPQIDAINSRMRDLAEKKYGKVPSG 190

Query: 126 DVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 176
           D KPNSWTLLDFGDVVIHIFLP QRAFYNLEEFYGNATP+ELPFENQ PF
Sbjct: 191 DTKPNSWTLLDFGDVVIHIFLPPQRAFYNLEEFYGNATPIELPFENQPPF 239

[Close]

BLAST of Cucsa.179780 vs. TrEMBL
Match: A0A067E099_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025843mg PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.9e-73
Identity = 135/169 (79.88%), Postives = 153/169 (90.53%), Query Frame = 1


Query: 7   FAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESLSFAVSM 66
           FA G +AED  LSN++++TD+M+D L  KYG VV++ NDQK P+AEID+D+ESLSFAV+M
Sbjct: 77  FAYGKDAEDSSLSNVSEDTDEMFDNLLNKYGKVVYRRNDQKSPAAEIDDDAESLSFAVAM 136

Query: 67  AKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGD 126
           A+V SDVKAADI+VLFVKPLVYWT FFIIATAFSRPQIDAIGSRIRDLAEK+YG+ PSGD
Sbjct: 137 ARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPSGD 196

Query: 127 VKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 176
            KPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNAT +ELPFENQ PF
Sbjct: 197 SKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATTIELPFENQPPF 245

[Close]

BLAST of Cucsa.179780 vs. TAIR10
Match: AT3G12930.1 (AT3G12930.1 Lojap-related protein)

HSP 1 Score: 277.3 bits (708), Expect = 6.4e-75
Identity = 131/172 (76.16%), Postives = 155/172 (90.12%), Query Frame = 1


Query: 1   MESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESL 60
           + +S  FAVG EAEDGFLSN++++TD+M+D+LF KYG VVF+S D K P+AE+D+D+ESL
Sbjct: 62  LSNSRKFAVGKEAEDGFLSNVSEDTDEMFDDLFNKYGKVVFRSTDVKSPTAEVDDDAESL 121

Query: 61  SFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG 120
           +FAV +AKVASDVKA DI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSR+RDLAEKKYG
Sbjct: 122 AFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRDLAEKKYG 181

Query: 121 RSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQ 173
           +  +GDVKPNSWTLLDFGDVVIH+FLP QR FYNLE+FYGNA  +ELPFE+Q
Sbjct: 182 KVANGDVKPNSWTLLDFGDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFEDQ 233

[Close]

BLAST of Cucsa.179780 vs. NCBI nr
Match: gi|449460046|ref|XP_004147757.1| (PREDICTED: protein Iojap, chloroplastic [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 3.4e-94
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESL 60
           MESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEID+DSESL
Sbjct: 70  MESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDDDSESL 129

Query: 61  SFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG 120
           SFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG
Sbjct: 130 SFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG 189

Query: 121 RSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 176
           RSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 190 RSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 244

[Close]

BLAST of Cucsa.179780 vs. NCBI nr
Match: gi|659101845|ref|XP_008451822.1| (PREDICTED: protein Iojap, chloroplastic [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 2.8e-80
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 1


Query: 21  MNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESLSFAVSMAKVASDVKAADIRV 80
           MND+T+DMYDELFKKYGNVVFKSNDQKPPSAEID+D+ESLSFAVSMAKVASDVKAADIRV
Sbjct: 1   MNDDTNDMYDELFKKYGNVVFKSNDQKPPSAEIDDDAESLSFAVSMAKVASDVKAADIRV 60

Query: 81  LFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTLLDFGDV 140
           LFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRS SGDVKPNSWTLLDFGDV
Sbjct: 61  LFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSSSGDVKPNSWTLLDFGDV 120

Query: 141 VIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 176
           VIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 121 VIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 155

[Close]

BLAST of Cucsa.179780 vs. NCBI nr
Match: gi|1012207516|ref|XP_015932276.1| (PREDICTED: protein Iojap, chloroplastic [Arachis duranensis])

HSP 1 Score: 292.0 bits (746), Expect = 7.1e-76
Identity = 140/169 (82.84%), Postives = 154/169 (91.12%), Query Frame = 1


Query: 7   FAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESLSFAVSM 66
           FA G EAED F S++ ++TD+MYDELFK YG VVFK  DQKP +AE+D+D+ESLSFAV M
Sbjct: 71  FAFGKEAEDSFFSDVGEDTDEMYDELFKNYGKVVFKRKDQKPATAEVDDDAESLSFAVEM 130

Query: 67  AKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGD 126
           AKVAS+VKAADI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG+ P+GD
Sbjct: 131 AKVASEVKAADIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGKFPTGD 190

Query: 127 VKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 176
            KPNSWTLLDFGDVV+HIFLP QRAFYNLEEFYGNATPVELPFENQ PF
Sbjct: 191 SKPNSWTLLDFGDVVVHIFLPPQRAFYNLEEFYGNATPVELPFENQPPF 239

[Close]

BLAST of Cucsa.179780 vs. NCBI nr
Match: gi|1021560562|ref|XP_016171532.1| (PREDICTED: protein Iojap, chloroplastic [Arachis ipaensis])

HSP 1 Score: 292.0 bits (746), Expect = 7.1e-76
Identity = 140/169 (82.84%), Postives = 154/169 (91.12%), Query Frame = 1


Query: 7   FAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESLSFAVSM 66
           FA G EAED F S++ ++TD+MYDELFK YG VVFK  DQKP +AE+D+D+ESLSFAV M
Sbjct: 71  FAFGKEAEDSFFSDVGEDTDEMYDELFKNYGKVVFKRKDQKPATAEVDDDAESLSFAVEM 130

Query: 67  AKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGD 126
           AKVAS+VKAADI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG+ P+GD
Sbjct: 131 AKVASEVKAADIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGKFPTGD 190

Query: 127 VKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 176
            KPNSWTLLDFGDVV+HIFLP QRAFYNLEEFYGNATPVELPFENQ PF
Sbjct: 191 SKPNSWTLLDFGDVVVHIFLPPQRAFYNLEEFYGNATPVELPFENQPPF 239

[Close]

BLAST of Cucsa.179780 vs. NCBI nr
Match: gi|1000978617|ref|XP_015571228.1| (PREDICTED: protein Iojap, chloroplastic [Ricinus communis])

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-75
Identity = 139/175 (79.43%), Postives = 158/175 (90.29%), Query Frame = 1


Query: 1   MESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSAEIDNDSESL 60
           ++  P FA+  +++D F SN+ D TD+M DELF KYG VVF++NDQKPP+A++D+D+ES+
Sbjct: 59  LKLKPSFAIRKDSDDSFFSNVED-TDEMLDELFNKYGKVVFRTNDQKPPTADVDDDAESM 118

Query: 61  SFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYG 120
           SFAV+MAKVASDVKA DIRVLFVKPLVYWTRFFIIATAFSRPQIDAI SRIRDLAEKKYG
Sbjct: 119 SFAVAMAKVASDVKAGDIRVLFVKPLVYWTRFFIIATAFSRPQIDAIASRIRDLAEKKYG 178

Query: 121 RSPSGDVKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 176
           R PSGD KPNSWTLLDFGDVVIHIFLP+QRAFYNLEEFYGNATP+ELPFENQ PF
Sbjct: 179 RVPSGDTKPNSWTLLDFGDVVIHIFLPEQRAFYNLEEFYGNATPIELPFENQPPF 232

The following BLAST results are available for this feature:

BLAST of Cucsa.179780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IOJAC_ARATH	1.1e-73	76.16	Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2 SV=1	[more]
IOJAP_MAIZE	4.1e-55	64.78	Protein Iojap, chloroplastic OS=Zea mays GN=Ij PE=1 SV=1	[more]
IOJAP_SYNY3	3.5e-14	40.59	Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]
IOJAP_STRPN	4.0e-10	36.52	Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain A...	[more]
IOJAP_BACHD	7.5e-09	32.46	Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DS...	[more]

BLAST of Cucsa.179780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVG5_CUCSA	2.4e-94	99.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064060 PE=3 SV=1	[more]
A0A061FAQ0_THECC	1.9e-75	81.87	Lojap-related protein isoform 2 OS=Theobroma cacao GN=TCM_032424 PE=3 SV=1	[more]
A0A0D2UYR0_GOSRA	2.5e-75	81.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G355200 PE=3 SV=1	[more]
B9I0I6_POPTR	7.2e-75	81.18	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14610g PE=3 SV=1	[more]
A0A067E099_CITSI	3.9e-73	79.88	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025843mg PE=3 SV=1	[more]

BLAST of Cucsa.179780 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12930.1	6.4e-75	76.16	Lojap-related protein	[more]

BLAST of Cucsa.179780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460046\|ref\|XP_004147757.1\|	3.4e-94	99.43	PREDICTED: protein Iojap, chloroplastic [Cucumis sativus]	[more]
gi\|659101845\|ref\|XP_008451822.1\|	2.8e-80	96.77	PREDICTED: protein Iojap, chloroplastic [Cucumis melo]	[more]
gi\|1012207516\|ref\|XP_015932276.1\|	7.1e-76	82.84	PREDICTED: protein Iojap, chloroplastic [Arachis duranensis]	[more]
gi\|1021560562\|ref\|XP_016171532.1\|	7.1e-76	82.84	PREDICTED: protein Iojap, chloroplastic [Arachis ipaensis]	[more]
gi\|1000978617\|ref\|XP_015571228.1\|	1.6e-75	79.43	PREDICTED: protein Iojap, chloroplastic [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004394	Iojap/RsfS/C7orf30

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.179780.1	Cucsa.179780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	HAMAP	MF_01477	Iojap_RsfS	coord: 57..160 score: 18
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	PANTHER	PTHR21043	IOJAP SUPERFAMILY ORTHOLOG	coord: 12..175 score: 1.7E
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	TIGRFAMs	TIGR00090	TIGR00090	coord: 66..159 score: 5.7
None	No IPR available	GENE3D	G3DSA:3.30.460.10		coord: 62..162 score: 4.6
None	No IPR available	PANTHER	PTHR21043:SF1	PROTEIN IOJAP, CHLOROPLASTIC	coord: 12..175 score: 1.7E
None	No IPR available	PFAM	PF02410	RsfS	coord: 66..159 score: 1.8
None	No IPR available	unknown	SSF81301	Nucleotidyltransferase	coord: 60..169 score: 4.09

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.179780	Csa4G064060	Cucumber (Chinese Long) v2	cgycuB275
Cucsa.179780	MELO3C016177	Melon (DHL92) v3.5.1	cgymeB323
Cucsa.179780	ClCG07G010660	Watermelon (Charleston Gray)	cgywcgB320
Cucsa.179780	CSPI04G07420	Wild cucumber (PI 183967)	cgycpiB285
Cucsa.179780	CmaCh04G006310	Cucurbita maxima (Rimu)	cgycmaB0512
Cucsa.179780	CmoCh04G006800	Cucurbita moschata (Rifu)	cgycmoB0512
Cucsa.179780	Cp4.1LG01g00940	Cucurbita pepo (Zucchini)	cgycpeB0494
Cucsa.179780	MELO3C016177.2	Melon (DHL92) v3.6.1	cgymedB318
Cucsa.179780	CsaV3_4G007640	Cucumber (Chinese Long) v3	cgycucB289
Cucsa.179780	Cla97C07G137410	Watermelon (97103) v2	cgywmbB324
Cucsa.179780	Bhi01G002410	Wax gourd	cgywgoB369
Cucsa.179780	Carg13114	Silver-seed gourd	carcgyB0052

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.179780	Cucurbita moschata (Rifu)	cgycmoB0511
Cucsa.179780	Watermelon (97103) v1	cgywmB343
Cucsa.179780	Cucurbita pepo (Zucchini)	cgycpeB0493
Cucsa.179780	Bottle gourd (USVL1VR-Ls)	cgylsiB301
Cucsa.179780	Silver-seed gourd	carcgyB0732
Cucsa.179780	Cucurbita maxima (Rimu)	cgycmaB0511