MELO3C013444 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013444
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDehydrin protein
Locationchr1 : 17084088 .. 17084309 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGGGACGAGCGTGGCAACCATCCGACTCACCGACAAGCATGGCAACCCCATCCAACTCACCGACGAGCACAACCCGGTAGTGCTGACTGATGAACATGGCAACCCCATGTGGCTCACTGACATCGAAACCAAGGTTGGCACGTCACTCGTGTCACTGATGTTTGTGGTGGCGGCGGCGGCGGCGGCAATGACTGCTTCTGATGTTAAAGGTAGTTAA

mRNA sequence

ATGTACGGGACGAGCGTGGCAACCATCCGACTCACCGACAAGCATGGCAACCCCATCCAACTCACCGACGAGCACAACCCGGTAGTGCTGACTGATGAACATGGCAACCCCATGTGGCTCACTGACATCGAAACCAAGGTTGGCACGTCACTCGTGTCACTGATGTTTGTGGTGGCGGCGGCGGCGGCGGCAATGACTGCTTCTGATGTTAAAGGTAGTTAA

Coding sequence (CDS)

ATGTACGGGACGAGCGTGGCAACCATCCGACTCACCGACAAGCATGGCAACCCCATCCAACTCACCGACGAGCACAACCCGGTAGTGCTGACTGATGAACATGGCAACCCCATGTGGCTCACTGACATCGAAACCAAGGTTGGCACGTCACTCGTGTCACTGATGTTTGTGGTGGCGGCGGCGGCGGCGGCAATGACTGCTTCTGATGTTAAAGGTAGTTAA

Protein sequence

MYGTSVATIRLTDKHGNPIQLTDEHNPVVLTDEHGNPMWLTDIETKVGTSLVSLMFVVAAAAAAMTASDVKGS*
Homology
[Close]
BLAST of MELO3C013444 vs. Swiss-Prot
Match: ECP40_DAUCA (Embryogenic cell protein 40 OS=Daucus carota GN=ECP40 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-06
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 

Query: 11 LTDKHGNPIQLTDEH-NPVVLTDEHGNPMWLTDIETKVGTS 51
          L D+ GNPIQLTD+H NPV LTDE+GNP+ +T + T   T+
Sbjct: 4  LRDEKGNPIQLTDQHGNPVQLTDEYGNPVHITGVATTGATT 44

[Close]
BLAST of MELO3C013444 vs. TrEMBL
Match: A0A0A0K124_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004060 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-10
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 1  MYGTSVATIRLTDKHGNPIQLTDEHNPVVLTDEHGNPMWLTDIETKVGTSLV 53
          MYGTSVATIRLT          DEHNPVVLTDEHGNPMWL+D+ETKV   +V
Sbjct: 1  MYGTSVATIRLT----------DEHNPVVLTDEHGNPMWLSDVETKVVQQVV 42

[Close]
BLAST of MELO3C013444 vs. TrEMBL
Match: A0A0B0PPF3_GOSAR (Late embryogenesis abundant OS=Gossypium arboreum GN=F383_08242 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-08
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 11 LTDKHGNPIQLTDEH-NPVVLTDEHGNPMWLTDIETKVGTSLVSLMFVVAAAAAAMTASD 70
          L D+HGNPIQLTDEH NPV LTDEHGNP+++T I TK  T+  SL  ++     +  A+D
Sbjct: 4  LRDEHGNPIQLTDEHGNPVQLTDEHGNPIYVTGIATKHPTTTTSLSGLMGYGTGSAVATD 63

[Close]
BLAST of MELO3C013444 vs. TrEMBL
Match: A0A0D2VZT1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G154800 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-08
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 11 LTDKHGNPIQLTDEH-NPVVLTDEHGNPMWLTDIETKVGTSLVSLMFVVAAAAAAMTASD 70
          L D+HGNPIQLTDEH NPV LTDEHGNP+++T I TK  T+  SL  ++     +  A+D
Sbjct: 23 LRDEHGNPIQLTDEHGNPVQLTDEHGNPIYVTGIATKHPTTTTSLSGLMGYGTGSAVATD 82

[Close]
BLAST of MELO3C013444 vs. TrEMBL
Match: W9SFN9_9ROSA (Putative dehydrin LEA OS=Morus notabilis GN=L484_008742 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 11 LTDKHGNPIQLTDEH-NPVVLTDEHGNPMWLTDIETKVGTS 51
          L D+HGNPIQLTDEH NPVVLTDEHGNPM LT +    GT+
Sbjct: 4  LRDEHGNPIQLTDEHGNPVVLTDEHGNPMHLTGVAKTEGTA 44

[Close]
BLAST of MELO3C013444 vs. TrEMBL
Match: V9M5C3_MANES (Dehydrin protein OS=Manihot esculenta GN=LTI30 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-06
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1 

Query: 11 LTDKHGNPIQLTDEH-NPVVLTDEHGNPMWLTDIETKVGTSLVSLMFVVAAAAAAMTASD 70
          L D++GNPIQLTDEH NPV LTDEHGNP+ +T + T    +L +LM     A   + +S+
Sbjct: 4  LRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGVATSKPPTLGTLMENEVPATGLLASSN 63

[Close]
BLAST of MELO3C013444 vs. NCBI nr
Match: gi|700187920|gb|KGN43153.1| (hypothetical protein Csa_7G004060 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 1  MYGTSVATIRLTDKHGNPIQLTDEHNPVVLTDEHGNPMWLTDIETKVGTSLV 53
          MYGTSVATIRLT          DEHNPVVLTDEHGNPMWL+D+ETKV   +V
Sbjct: 1  MYGTSVATIRLT----------DEHNPVVLTDEHGNPMWLSDVETKVVQQVV 42

[Close]
BLAST of MELO3C013444 vs. NCBI nr
Match: gi|763810848|gb|KJB77750.1| (hypothetical protein B456_012G154800 [Gossypium raimondii])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-08
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 11 LTDKHGNPIQLTDEH-NPVVLTDEHGNPMWLTDIETKVGTSLVSLMFVVAAAAAAMTASD 70
          L D+HGNPIQLTDEH NPV LTDEHGNP+++T I TK  T+  SL  ++     +  A+D
Sbjct: 23 LRDEHGNPIQLTDEHGNPVQLTDEHGNPIYVTGIATKHPTTTTSLSGLMGYGTGSAVATD 82

[Close]
BLAST of MELO3C013444 vs. NCBI nr
Match: gi|823252495|ref|XP_012458856.1| (PREDICTED: late embryogenesis abundant protein-like [Gossypium raimondii])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-08
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 11 LTDKHGNPIQLTDEH-NPVVLTDEHGNPMWLTDIETKVGTSLVSLMFVVAAAAAAMTASD 70
          L D+HGNPIQLTDEH NPV LTDEHGNP+++T I TK  T+  SL  ++     +  A+D
Sbjct: 4  LRDEHGNPIQLTDEHGNPVQLTDEHGNPIYVTGIATKHPTTTTSLSGLMGYGTGSAVATD 63

[Close]
BLAST of MELO3C013444 vs. NCBI nr
Match: gi|728846856|gb|KHG26299.1| (Late embryogenesis abundant [Gossypium arboreum])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-08
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 11 LTDKHGNPIQLTDEH-NPVVLTDEHGNPMWLTDIETKVGTSLVSLMFVVAAAAAAMTASD 70
          L D+HGNPIQLTDEH NPV LTDEHGNP+++T I TK  T+  SL  ++     +  A+D
Sbjct: 4  LRDEHGNPIQLTDEHGNPVQLTDEHGNPIYVTGIATKHPTTTTSLSGLMGYGTGSAVATD 63

[Close]
BLAST of MELO3C013444 vs. NCBI nr
Match: gi|703133312|ref|XP_010105346.1| (putative dehydrin LEA [Morus notabilis])

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 11 LTDKHGNPIQLTDEH-NPVVLTDEHGNPMWLTDIETKVGTS 51
          L D+HGNPIQLTDEH NPVVLTDEHGNPM LT +    GT+
Sbjct: 4  LRDEHGNPIQLTDEHGNPVVLTDEHGNPMHLTGVAKTEGTA 44

The following BLAST results are available for this feature:
BLAST of MELO3C013444 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ECP40_DAUCA7.3e-0658.54Embryogenic cell protein 40 OS=Daucus carota GN=ECP40 PE=1 SV=1[more]
BLAST of MELO3C013444 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K124_CUCSA4.4e-1069.23Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004060 PE=4 SV=1[more]
A0A0B0PPF3_GOSAR1.9e-0855.00Late embryogenesis abundant OS=Gossypium arboreum GN=F383_08242 PE=3 SV=1[more]
A0A0D2VZT1_GOSRA1.9e-0855.00Uncharacterized protein OS=Gossypium raimondii GN=B456_012G154800 PE=3 SV=1[more]
W9SFN9_9ROSA2.1e-0773.17Putative dehydrin LEA OS=Morus notabilis GN=L484_008742 PE=3 SV=1[more]
V9M5C3_MANES5.1e-0650.00Dehydrin protein OS=Manihot esculenta GN=LTI30 PE=2 SV=1[more]
BLAST of MELO3C013444 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700187920|gb|KGN43153.1|6.4e-1069.23hypothetical protein Csa_7G004060 [Cucumis sativus][more]
gi|763810848|gb|KJB77750.1|2.7e-0855.00hypothetical protein B456_012G154800 [Gossypium raimondii][more]
gi|823252495|ref|XP_012458856.1|2.7e-0855.00PREDICTED: late embryogenesis abundant protein-like [Gossypium raimondii][more]
gi|728846856|gb|KHG26299.1|2.7e-0855.00Late embryogenesis abundant [Gossypium arboreum][more]
gi|703133312|ref|XP_010105346.1|3.0e-0773.17putative dehydrin LEA [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0009415 response to water
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0008150 biological_process
biological_process GO:0009631 cold acclimation
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009414 response to water deprivation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013444T1MELO3C013444T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C013444Csa7G004060Cucumber (Chinese Long) v2cumeB531
MELO3C013444Cla015906Watermelon (97103) v1mewmB239
MELO3C013444ClCG02G004780Watermelon (Charleston Gray)mewcgB196
MELO3C013444Cla97C02G031760Watermelon (97103) v2mewmbB179
MELO3C013444Bhi05G001121Wax gourdmewgoB223
MELO3C013444CSPI07G00170Wild cucumber (PI 183967)cpimeB539
MELO3C013444CmoCh19G006930Cucurbita moschata (Rifu)cmomeB453
MELO3C013444Lsi11G011220Bottle gourd (USVL1VR-Ls)lsimeB096
MELO3C013444Carg19398Silver-seed gourdcarmeB0321
MELO3C013444CsaV3_7G000140Cucumber (Chinese Long) v3cucmeB549
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013444Cucumber (Chinese Long) v2cumeB102
MELO3C013444Watermelon (Charleston Gray)mewcgB190
MELO3C013444Watermelon (97103) v1mewmB252
MELO3C013444Cucurbita pepo (Zucchini)cpemeB224
MELO3C013444Cucurbita pepo (Zucchini)cpemeB272
MELO3C013444Cucurbita pepo (Zucchini)cpemeB605
MELO3C013444Cucurbita pepo (Zucchini)cpemeB684
MELO3C013444Cucurbita pepo (Zucchini)cpemeB746
MELO3C013444Bottle gourd (USVL1VR-Ls)lsimeB064
MELO3C013444Cucumber (Gy14) v2cgybmeB088
MELO3C013444Cucumber (Gy14) v2cgybmeB469
MELO3C013444Silver-seed gourdcarmeB0180
MELO3C013444Silver-seed gourdcarmeB0952
MELO3C013444Cucumber (Chinese Long) v3cucmeB106
MELO3C013444Watermelon (97103) v2mewmbB176
MELO3C013444Wax gourdmewgoB231
MELO3C013444Melon (DHL92) v3.5.1memeB042
MELO3C013444Cucumber (Gy14) v1cgymeB151
MELO3C013444Cucumber (Gy14) v1cgymeB612
MELO3C013444Cucurbita maxima (Rimu)cmameB093
MELO3C013444Cucurbita maxima (Rimu)cmameB462
MELO3C013444Cucurbita maxima (Rimu)cmameB512
MELO3C013444Cucurbita maxima (Rimu)cmameB563
MELO3C013444Cucurbita moschata (Rifu)cmomeB086
MELO3C013444Cucurbita moschata (Rifu)cmomeB503
MELO3C013444Cucurbita moschata (Rifu)cmomeB552
MELO3C013444Wild cucumber (PI 183967)cpimeB102