Carg19398 (gene) Silver-seed gourd

NameCarg19398
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_096 : 379532 .. 381383 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGACTCCTCAATGTATTTCATTTTGTCATTAAAAAAAGCAAAAATGGCTGATGGTGTCGATACAGTTCTTTATTATATCTGGATGATGAGATAATTCCATCTTGAAAAGAGAAGCAGCCTGGCCCTTGAGTTCTCGAAGCTGAAGATGCCTCGATTCAAACTTCAGTTGTCTAAACTCTGGTTCTTGTCTTACTTGCAATGGCAAGTTTTTTTAGCACGTAGTGTAAATAGTCTCCTTTTTTGTCCTACCGAATAAAGATTGAATCCTTATTTTCGATTGTTTTTATTTGGGGAGGCGGCCGAAATTTTTTTTTTCAGCCAGAGAATGAGCAGCGGTACTAGGGTGATGAGCTCGAGGGCGGAGGAGTCTGAGGTGTCGAGTTTGTGTAATATAGCTTACTTCCCCAGTTTGTTTACACTCCTAGAATTTAGCTAGAATGCCAACACAATCAAGATAGAGATGGTTGTTAAATGTTTTGGATGTGGATTGGTTTCATCACAGAAGCTGACACCTATCATATAAATGTCTAACGTGGCAACCCAAAAGAGAGTACGTGTTAGGCTTAGACAGGTACCCAAGGCTATTTCTTATCCTCTTGAGTGTGTAAATGGAAGGGATGAGAATGGCGAAAATGGCTGATATACAGGACGAGTATGGCAACCCCATCCAACTCACCGACGAGCATGGCAACCCGGTTGTGTTGACTGATGAACATGGCAACCCCGTGAGGCTCTCTGGCGTTGCAACCAAGGTCGGCACGACACTTGGGTCGCTGATCTTTGGCAGTGGTGATGAGGATGGTGGTGGCCATGGCAGTGCTTGTGATGCTGAAGGTAGTTCAGGTGGTGGCAATGGCGACGGCGAGCAGGAGCTGATGCCGGTCGTGGAGCATGAAGATGGCGGCTCAGGTACACATGTTGGCTCGGCCACTTCAGGCTCTAGTCCGGTGAGTCCAAGTTTTTGAATTATAATTAGCCGTTGGACTTTCGTATTCTCGCTCAGTCTCTCGATTTTCATTCTATTCTGGCGTCGCTTAATCATTTTCTCTACAAAGTACACTATAAGGCCTCACCTCTTTGAGGCCTATGGAGTCTTCGTATAGCCTCCCTTAATTGAGACTCGACACCTTTTTTGGAGTCCTTGAGCAAAGGGTCTTTATTCGATACGTGAGGATTCTATTGACATGACTAAATTAAAGGCATGACTTTGATACTAAGTTACAAACGACGACTCTCTACAATGGTATAATATTGTCCATTTTGAGCATAAAGCTTTCAAGGCTTTACTTTGGGTTTCTCTTCGACCCTCGTACCAATGAACATACATTTTTTACTTATAAATTTATGATCATCTTTAATCGAAAGACGTGTCGATTCTATTTAATCCATTTTTTTTTTCCGAAGAAATACAATTACAATTTTTAAAACCATATTAATAAAATAAAATTATGGTATGCAAAATGAACTTTTTGCCATATCCAACTTGCAAATGGTTCGATGCTGAACGAACGCGTATTACGTATATGAGGTATTAAATGGGTTACAATTTAATTGTAATATCCATTATGTTAATCCTAATTTAAGTTTGTAATAAATTATATAATTAAATATCATTCATAGGATTAATTTATTTCCATTTCCAGTCTGAGGAAGAAGAACAAAGTGAGAAGAAGAAGAAGAAGAAGAAGAAAGGACTGACTCAAAAGATAAAAGAGAAGCTAACAGGAGGGAAGCATAGAGAGGAGCAGCCTCAAGCTTCTTCCCCTCCGACCACCGCTGCAACTATAACCGCCGCTCCGATCACCACGAACAAAATTCACCATGGGGAAACCGCTCGTAATATTCTCTAA

mRNA sequence

AAGGACTCCTCAATGTATTTCATTTTGTCATTAAAAAAAGCAAAAATGGCTGATGGTGTCGATACAGTTCTTTATTATATCTGGATGATGAGATAATTCCATCTTGAAAAGAGAAGCAGCCTGGCCCTTGAGTTCTCGAAGCTGAAGATGCCTCGATTCAAACTTCAGTTGTCTAAACTCTGGTTCTTGTCTTACTTGCAATGGCAAGTTTTTTTAGCACGTAGTGTAAATAGTCTCCTTTTTTGTCCTACCGAATAAAGATTGAATCCTTATTTTCGATTGTTTTTATTTGGGGAGGCGGCCGAAATTTTTTTTTTCAGCCAGAGAATGAGCAGCGGTACTAGGGTGATGAGCTCGAGGGCGGAGGAGTCTGAGGTGTCGAGTTTGTGTAATATAGCTTACTTCCCCAGTTTGTTTACACTCCTAGAATTTAGCTAGAATGCCAACACAATCAAGATAGAGATGGTTGTTAAATGTTTTGGATGTGGATTGGTTTCATCACAGAAGCTGACACCTATCATATAAATGTCTAACGTGGCAACCCAAAAGAGAGTACGTGTTAGGCTTAGACAGGTACCCAAGGCTATTTCTTATCCTCTTGAGTGTGTAAATGGAAGGGATGAGAATGGCGAAAATGGCTGATATACAGGACGAGTATGGCAACCCCATCCAACTCACCGACGAGCATGGCAACCCGGTTGTGTTGACTGATGAACATGGCAACCCCGTGAGGCTCTCTGGCGTTGCAACCAAGGTCGGCACGACACTTGGGTCGCTGATCTTTGGCAGTGGTGATGAGGATGGTGGTGGCCATGGCAGTGCTTGTGATGCTGAAGGTAGTTCAGGTGGTGGCAATGGCGACGGCGAGCAGGAGCTGATGCCGGTCGTGGAGCATGAAGATGGCGGCTCAGGTACACATGTTGGCTCGGCCACTTCAGGCTCTAGTCCGTCTGAGGAAGAAGAACAAAGTGAGAAGAAGAAGAAGAAGAAGAAGAAAGGACTGACTCAAAAGATAAAAGAGAAGCTAACAGGAGGGAAGCATAGAGAGGAGCAGCCTCAAGCTTCTTCCCCTCCGACCACCGCTGCAACTATAACCGCCGCTCCGATCACCACGAACAAAATTCACCATGGGGAAACCGCTCGTAATATTCTCTAA

Coding sequence (CDS)

ATGGAAGGGATGAGAATGGCGAAAATGGCTGATATACAGGACGAGTATGGCAACCCCATCCAACTCACCGACGAGCATGGCAACCCGGTTGTGTTGACTGATGAACATGGCAACCCCGTGAGGCTCTCTGGCGTTGCAACCAAGGTCGGCACGACACTTGGGTCGCTGATCTTTGGCAGTGGTGATGAGGATGGTGGTGGCCATGGCAGTGCTTGTGATGCTGAAGGTAGTTCAGGTGGTGGCAATGGCGACGGCGAGCAGGAGCTGATGCCGGTCGTGGAGCATGAAGATGGCGGCTCAGGTACACATGTTGGCTCGGCCACTTCAGGCTCTAGTCCGTCTGAGGAAGAAGAACAAAGTGAGAAGAAGAAGAAGAAGAAGAAGAAAGGACTGACTCAAAAGATAAAAGAGAAGCTAACAGGAGGGAAGCATAGAGAGGAGCAGCCTCAAGCTTCTTCCCCTCCGACCACCGCTGCAACTATAACCGCCGCTCCGATCACCACGAACAAAATTCACCATGGGGAAACCGCTCGTAATATTCTCTAA

Protein sequence

MEGMRMAKMADIQDEYGNPIQLTDEHGNPVVLTDEHGNPVRLSGVATKVGTTLGSLIFGSGDEDGGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSGSSPSEEEEQSEKKKKKKKKGLTQKIKEKLTGGKHREEQPQASSPPTTAATITAAPITTNKIHHGETARNIL
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009415response to water
GO:0006950response to stress
Vocabulary: INTERPRO
TermDefinition
IPR000167Dehydrin
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0009415 response to water
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19398-RACarg19398-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000167DehydrinPFAMPF00257Dehydrincoord: 21..167
e-value: 2.6E-13
score: 50.8
IPR000167DehydrinPANTHERPTHR33346FAMILY NOT NAMEDcoord: 9..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..174

The following gene(s) are paralogous to this gene:

None