Lsi11G011220 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G011220
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Dehydrin protein
Location	chr11 : 19658787 .. 19661161 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGATAAGAATGGCGAAAATGGCTGATATACGGGACGAGCATGGCAACCCCATCCGACTCACCGACAAGCATGGCAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGAGGCTCACTGGTGTCGCAACCAAGCCTGGCCCGACACTCGGGTCACTGATGTTTGACATTGGTGGTGGTGGTGGGGATGGTGGCCATGGCAAGGTCGGCCCGACGCTTGGGTCACTGATGTTTGGCTGTGGTGGTAGTGGTGGTGTTAAGGATGGTGGCCATGGCTGTGCTTCTGATGCTAAAGCTAGTTCAGGTGGTGGCTATGGCGACGGTGAGCAGGCGCTGCAGCCGCATGAGGAGGATGAAGATGGTGGCTCTAGCGCCCATGTTCGCTCTACCACTTCAGGCTCTAGTTCGGTGAGTCCAACTTTTTGGATTATAATTTGTCGTTTGACTTCATATCCTCTCTCGGTTTCTTTTTAATTCTTTCGATTTTCATTTTATTCTGGTGTTTGCTCAATCATTTTTTATTTTTTTTACATTAAAGAATGAAGGTGAAGAAATCGATTCATACCCTTGAAGTTAGCAAGGTTTATTATCAATTCTAAACTTAAAACTTCCAATTTTGTTCTCAGGTTTTGATTCAAATGTTGCAAAGTTTACACTGAACTTGTGATGATAGTGTTGCCATATTTATGTGAAATTTGAATAGGGGTTATATATTTGCTATGAACTTGATTGATTTTGTTTATTTATTTGTCTTTTGGTCGAGGACTCCAGAGTATGCGATTTGGTTGGGAATTTTTTTTAATTTGGAAGATTAATTCGACAATTGATTTTATATATCGATCCAGATTTTTTAAAATGTGAAGCTTGATTTTTGAAATTTTAGTGAGTTCATGAAGTCTTTTTTGTAGTTGAACATAACATTTGGGATGAGGTTTGAATTTATGGTTTAAATAACCATTGACAAGTTTTTGTTTGTTTTGTGTTTTGTGTTTTTTATTTTTTTCATAAGAATTGCTAGGAAGAGCATGGTTCAAGTGGCATCCAATATGTAGGATAACTTCATATTAGATAACTTCGAGGCCCATAATTGTAAAAACAAAAAAAAAAAAAAACAAAACAAAAACGACTGTCAATAATATTTATGGCTTTTCTATTTTAAGGTCAATTTGTATGAAAAATTTTAAGGTCTATTTTAAGGTCAATGGAAAAGATTTGAATGAAAATATGTTGTTTCTTAATGGTAAAAGAGAGACAAAATTTCATTGAACTAGCAATGGATCAAAAAAATTATAAAAAAAAAAAAAAGAAAAAAACATGAAATCTTCAAATTTTTTCGAAAATTGAAATTTTGATGGAAATTTCAAGAAATTATTAATTATGGTTGCAAGGTTGGATTGTTCTAAATCTCTAACTCTAGGGGTTTATATATATAAACTAGTTGAGCCAAGTTGGTCATCACAATAAGTATTTTGACTTTTTTAGTCCTTAATATTTGGGAGAAATAAGATTTCTAAGCCTATTTTTTTCTTCTATTATTTGAATCATTGTAGAAAAATTGTATTAAATAAAAAGTATCTTGACCTGCTTCGGATGAGAGTTCATATTTAATCTTATTTGAACTTCAAGACGTCTTGCTTTCGGACTTTGACATTTTAACCCAAAAAAAAAAAAATCAAAGCCAAAATATAAATAAATAATAAATAAACCAAAAGAAGGAAGTGATCTTTATTTCTTAAAGGAAGAACATATGGTCTTATTACTTTAGGCTATAAATTTTAGTGAATTAATTTGTCAATTAGTATTTAGGATATAATCATATAGTTTTCTTAGCATTTAAGTACCTAAGTTCTAATAAATGAGATGATTTGTTAAAATGAGCATAATTCAACTAGCACAAAAGGTTTTATTGTCGATTTTAACGTTAGAAGTCTAAATTCAATATCATTTGTAGATGAATTTGTTAGTTATCGTAAATTTGTTTAATCTTGCATCATTTTCAGTCGGATGAAGAAGTACAAAGTGGGAGGAGGACGACGAAGAAGAAGAAAGGATTGACCCAGAAAATAAGAGAGAAACTAAGAGGAGGGAAGCATAAAGAGGAGCCACTTCACTTTACTCCTCCGACCACCACCACGGCTATCGAAACCGCCCCTCCGACCACCTCACAAAAGATTCACCGGGGAGAAATTTGATTATAATAATGTGTGAACTTGAGTTTATCTTTTAGTATTAGTTTTTGGTTAATGTACTTGGAGACTTGCTTTTGTAATGTCTATTTTAGAAGACTTCATTATATATATAAAAAAAAGTTGGTTTGAATTTTGCCATTTGTTTCTAAAGTATTCATATTCTTTTTATAAATTATA

mRNA sequence

ATGGGAGAGATAAGAATGGCGAAAATGGCTGATATACGGGACGAGCATGGCAACCCCATCCGACTCACCGACAAGCATGGCAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGAGGCTCACTGGTGTCGCAACCAAGCCTGGCCCGACACTCGGGTCACTGATGTTTGACATTGGTGGTGGTGGTGGGGATGGTGGCCATGGCAAGGTCGGCCCGACGCTTGGGTCACTGATGTTTGGCTGTGGTGGTAGTGGTGGTGTTAAGGATGGTGGCCATGGCTGTGCTTCTGATGCTAAAGCTAGTTCAGGTGGTGGCTATGGCGACGGTGAGCAGGCGCTGCAGCCGCATGAGGAGGATGAAGATGGTGGCTCTAGCGCCCATGTTCGCTCTACCACTTCAGGCTCTAGTTCGTCGGATGAAGAAGTACAAAGTGGGAGGAGGACGACGAAGAAGAAGAAAGGATTGACCCAGAAAATAAGAGAGAAACTAAGAGGAGGGAAGCATAAAGAGGAGCCACTTCACTTTACTCCTCCGACCACCACCACGGCTATCGAAACCGCCCCTCCGACCACCTCACAAAAGATTCACCGGGGAGAAATTTGATTATAATAATGTGTGAACTTGAGTTTATCTTTTAGTATTAGTTTTTGGTTAATGTACTTGGAGACTTGCTTTTGTAATGTCTATTTTAGAAGACTTCATTATATATATAAAAAAAAGTTGGTTTGAATTTTGCCATTTGTTTCTAAAGTATTCATATTCTTTTTATAAATTATA

Coding sequence (CDS)

ATGGGAGAGATAAGAATGGCGAAAATGGCTGATATACGGGACGAGCATGGCAACCCCATCCGACTCACCGACAAGCATGGCAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGAGGCTCACTGGTGTCGCAACCAAGCCTGGCCCGACACTCGGGTCACTGATGTTTGACATTGGTGGTGGTGGTGGGGATGGTGGCCATGGCAAGGTCGGCCCGACGCTTGGGTCACTGATGTTTGGCTGTGGTGGTAGTGGTGGTGTTAAGGATGGTGGCCATGGCTGTGCTTCTGATGCTAAAGCTAGTTCAGGTGGTGGCTATGGCGACGGTGAGCAGGCGCTGCAGCCGCATGAGGAGGATGAAGATGGTGGCTCTAGCGCCCATGTTCGCTCTACCACTTCAGGCTCTAGTTCGTCGGATGAAGAAGTACAAAGTGGGAGGAGGACGACGAAGAAGAAGAAAGGATTGACCCAGAAAATAAGAGAGAAACTAAGAGGAGGGAAGCATAAAGAGGAGCCACTTCACTTTACTCCTCCGACCACCACCACGGCTATCGAAACCGCCCCTCCGACCACCTCACAAAAGATTCACCGGGGAGAAATTTGA

Protein sequence

MGEIRMAKMADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGGHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSAHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTAIETAPPTTSQKIHRGEI

Homology

[Close]

BLAST of Lsi11G011220 vs. Swiss-Prot
Match: DHLEA_ARATH (Probable dehydrin LEA OS=Arabidopsis thaliana GN=LEA PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 79/190 (41.58%), Postives = 94/190 (49.47%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVV-LTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDG 68
           MAD+RDE GNPI LTD  GNP+V LTDEHGNPM LTGV +       S   DI     + 
Sbjct: 1   MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDI----AEH 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASS-GGGYGDGEQALQPHEEDEDGGS 128
               VG T                 G G A+ A A+    G G      Q H     G  
Sbjct: 61  PTSTVGET----------HPAAAPAGAGAATAATATGVSAGTGATTTGQQHH-----GSL 120

Query: 129 SAHV-RSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTA 188
             H+ RS +S SSSS+++ Q GRR    KK + +KI+EK   GKHK+E    TP T TT 
Sbjct: 121 EEHLRRSGSSSSSSSEDDGQGGRR----KKSIKEKIKEKFGSGKHKDEQ---TPATATT- 161

Query: 189 IETAPPTTSQ 196
             T P TT Q
Sbjct: 181 --TGPATTDQ 161

[Close]

BLAST of Lsi11G011220 vs. Swiss-Prot
Match: DHLE_RAPSA (Late embryogenesis abundant protein OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.3e-12
Identity = 70/187 (37.43%), Postives = 93/187 (49.73%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGG 68
           MAD++DE GNPI LTD +GNPV L+DE GNPM +TGVA+       S+       G    
Sbjct: 1   MADLKDERGNPIHLTDAYGNPVQLSDEFGNPMHITGVASSAPQYKDSVT------GNIAE 60

Query: 69  HGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSA 128
           +    P  G       G+G            A A++  G    E       ++  G    
Sbjct: 61  YPTEAPPAGV----AAGTG------------AAATTAAGVTTSETTT---GQEHHGSLGE 120

Query: 129 HV-RSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTAIE 188
           H+ RS +S SSSS+++ Q GRR    KK +  KI++KL GGKHK+E       T TTA  
Sbjct: 121 HLRRSGSSSSSSSEDDGQGGRR----KKSIKDKIKDKLGGGKHKDE------QTPTTATT 152

Query: 189 TAPPTTS 195
           T P TT+
Sbjct: 181 TGPTTTT 152

[Close]

BLAST of Lsi11G011220 vs. Swiss-Prot
Match: ECP40_DAUCA (Embryogenic cell protein 40 OS=Daucus carota GN=ECP40 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-09
Identity = 60/149 (40.27%), Postives = 77/149 (51.68%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGG 68
           MAD+RDE GNPI+LTD+HGNPV LTDE+GNP+ +TGVAT  G T G     +GG      
Sbjct: 1   MADLRDEKGNPIQLTDQHGNPVQLTDEYGNPVHITGVAT-TGATTGHHDHGVGG----AS 60

Query: 69  HGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSA 128
           HG VG T      G GG  G    G   A+ A A+ GG +G        H     G  +A
Sbjct: 61  HGGVGST------GLGGVAGA--AGLAGATAAAATHGGSHG----GTGTHGVGPTGVGAA 120

Query: 129 HVRSTTSGSSSSDEEVQSGRRTTKKKKGL 158
           H      G + +   + +G  TT +  G+
Sbjct: 121 H------GGTGTTTGLGTGTGTTGQTHGM 126

[Close]

BLAST of Lsi11G011220 vs. TrEMBL
Match: V9M5C3_MANES (Dehydrin protein OS=Manihot esculenta GN=LTI30 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 82/176 (46.59%), Postives = 102/176 (57.95%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGG 68
           MAD+RDE+GNPI+LTD+HGNPV LTDEHGNP+ +TGVAT   PTLG+LM           
Sbjct: 1   MADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGVATSKPPTLGTLM----------- 60

Query: 69  HGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSA 128
             +V P  G L      S G      G A D +      +   E   QP  +++ G    
Sbjct: 61  ENEV-PATGLL----ASSNGTDHTSKGHAGDEE-----NHRKEEPQPQPQPQEQQGSGEI 120

Query: 129 HVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTT 185
             RS+TS SSSS+++ Q GRR   KKKGL +KI+EKL GGKHKEE  H    +T T
Sbjct: 121 E-RSSTSSSSSSEDDGQGGRR---KKKGLREKIKEKLTGGKHKEEQRHKASVSTET 151

[Close]

BLAST of Lsi11G011220 vs. TrEMBL
Match: F6I0M9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g04390 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.9e-19
Identity = 85/188 (45.21%), Postives = 99/188 (52.66%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVA-TKPGPTLGSLMFDIGGGGGDG 68
           MAD+RDEHGNPI+LTD+HGNPV LTDEHGNPM LTGVA T P  T  + + D        
Sbjct: 1   MADLRDEHGNPIQLTDQHGNPVQLTDEHGNPMHLTGVASTHPITTTTAPVHDADA----- 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSS 128
                            G       GHG A  A       +G    A +P E    GG  
Sbjct: 61  -------------LKTTGESHPPTSGHGIADQAV------HGGAPVAAEPAE---GGGGE 120

Query: 129 AH--VRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTA 188
            H   R ++S SSSS+++ Q GRR    KKGL +KI+EKL GGKHKEE  H   PTT  A
Sbjct: 121 VHHEKRESSSSSSSSEDDGQGGRR----KKGLKEKIKEKLTGGKHKEEQGH--APTTGVA 155

Query: 189 IETAPPTT 194
           I T   TT
Sbjct: 181 ITTTTTTT 155

[Close]

BLAST of Lsi11G011220 vs. TrEMBL
Match: M5VP39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010975mg PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 88/200 (44.00%), Postives = 113/200 (56.50%), Query Frame = 1


Query: 4   IRMAKMADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLM---FDI 63
           ++  +MA IRDE+GN ++LTD+HGNPV LTDEHGNPM LTGVAT      G+       +
Sbjct: 18  VKNTQMAQIRDEYGNLVQLTDEHGNPVELTDEHGNPMHLTGVATSTEAETGTYTGSGVHV 77

Query: 64  GGGGGDGGHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEE 123
            G G  GG+ + G  LG    G G + G+   G    SD      GG G+  Q  QPH  
Sbjct: 78  PGSGTTGGYEEHGGALG----GAGVATGLGMFGDKQTSDQPHGYDGGLGEHRQQ-QPH-- 137

Query: 124 DEDGGSSAHV-RSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFT- 183
             DGG +    RS +S SSSS+++ Q GRR   KKKGL +KI+EKL GGKHK++      
Sbjct: 138 --DGGVTGEARRSGSSSSSSSEDDGQGGRR---KKKGLKEKIKEKLTGGKHKDDAQQQAY 197

Query: 184 ----PPTTTTAIETAPPTTS 195
                 T T A+ TA  TT+
Sbjct: 198 GQEQGQTHTIAVGTAITTTA 205

[Close]

BLAST of Lsi11G011220 vs. TrEMBL
Match: G4XR61_9ROSI (Dehydrin 4 OS=Vitis yeshanensis PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 85/189 (44.97%), Postives = 98/189 (51.85%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVA-TKPGPTLGSLMFDIGGGGGDG 68
           MAD+RDEHGNPI+LTD+HGNPV LTDEHGNPM LTGVA T P  T               
Sbjct: 1   MADLRDEHGNPIQLTDQHGNPVQLTDEHGNPMHLTGVASTHPITTT-------------- 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSS 128
                 P   +      G       GHG A  A       +G    A +P    E GG  
Sbjct: 61  ---TAAPVHDADALKTTGESHPPTFGHGTADQAM------HGGAPVAAEP---AEGGGGV 120

Query: 129 AH--VRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTA 188
            H   R ++S SSSS+++ Q GRR    KKGL +KI+EKL GGKHKEE  H   PTT  A
Sbjct: 121 VHHEKRESSSSSSSSEDDGQGGRR----KKGLKEKIKEKLTGGKHKEEQGH--APTTGVA 157

Query: 189 IETAPPTTS 195
           I T   T S
Sbjct: 181 ITTTTTTGS 157

[Close]

BLAST of Lsi11G011220 vs. TrEMBL
Match: E7BXD8_JATCU (Dehydrin OS=Jatropha curcas GN=DHN-1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 74/166 (44.58%), Postives = 94/166 (56.63%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVAT-KPGPTLGSLMFDIGGGGGDG 68
           MAD+RDE+GNPIRLTD+HGNPV LTDEHGNP+ +TG+AT KP      L  D+       
Sbjct: 1   MADLRDEYGNPIRLTDEHGNPVELTDEHGNPVHITGLATSKPATIANVLQIDV------- 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSS 128
                 P  G L      S      GH          GG   +  +A QP ++ ++    
Sbjct: 61  ------PDTGLL-----ASTEEPPKGH-----TGEHVGGAEPEPVKAEQPQQQQQE---- 120

Query: 129 AHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEE 174
              RS++S SSSS+++ Q GRR   KKKGL +KI+EKL GGKHKEE
Sbjct: 121 -LERSSSSSSSSSEDDEQGGRR---KKKGLKEKIKEKLTGGKHKEE 135

[Close]

BLAST of Lsi11G011220 vs. TAIR10
Match: AT2G21490.1 (AT2G21490.1 dehydrin LEA)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-15
Identity = 79/190 (41.58%), Postives = 94/190 (49.47%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVV-LTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDG 68
           MAD+RDE GNPI LTD  GNP+V LTDEHGNPM LTGV +       S   DI     + 
Sbjct: 1   MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDI----AEH 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASS-GGGYGDGEQALQPHEEDEDGGS 128
               VG T                 G G A+ A A+    G G      Q H     G  
Sbjct: 61  PTSTVGET----------HPAAAPAGAGAATAATATGVSAGTGATTTGQQHH-----GSL 120

Query: 129 SAHV-RSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTA 188
             H+ RS +S SSSS+++ Q GRR    KK + +KI+EK   GKHK+E    TP T TT 
Sbjct: 121 EEHLRRSGSSSSSSSEDDGQGGRR----KKSIKEKIKEKFGSGKHKDEQ---TPATATT- 161

Query: 189 IETAPPTTSQ 196
             T P TT Q
Sbjct: 181 --TGPATTDQ 161

[Close]

BLAST of Lsi11G011220 vs. TAIR10
Match: AT4G39130.1 (AT4G39130.1 Dehydrin family protein)

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-09
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 1


Query: 9  MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVAT 48
          MAD++DE GNPI LTD HG P  L DE GN M LTGVAT
Sbjct: 1  MADLKDERGNPIYLTDAHGEPAQLMDEFGNAMHLTGVAT 39

[Close]

BLAST of Lsi11G011220 vs. TAIR10
Match: AT5G66400.1 (AT5G66400.1 Dehydrin family protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-06
Identity = 59/163 (36.20%), Postives = 80/163 (49.08%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLT-DEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDG 68
           MA  ++  G   + TD++GNP+    DE+GNPM   G  T             GGGG  G
Sbjct: 1   MASYQNRPGG--QATDEYGNPIQQQYDEYGNPMGGGGYGTG------------GGGGATG 60

Query: 69  GHGKVGPTLGSLMFGCGGSG---GVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDG 128
           G G      G   +G GG G   G +  G G  ++   + GG    G++ L  H+E   G
Sbjct: 61  GQGY---GTGGQGYGSGGQGYGTGGQGYGTGTGTEGFGTGGGARHHGQEQL--HKESGGG 120

Query: 129 GSSAHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRG 168
                 RS +  SSSS+++ Q GRR    KKG+TQKI+EKL G
Sbjct: 121 LGGMLHRSGSGSSSSSEDDGQGGRR----KKGITQKIKEKLPG 140

[Close]

BLAST of Lsi11G011220 vs. NCBI nr
Match: gi|442022395|gb|AGC51773.1| (dehydrin protein [Manihot esculenta])

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 82/176 (46.59%), Postives = 102/176 (57.95%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGG 68
           MAD+RDE+GNPI+LTD+HGNPV LTDEHGNP+ +TGVAT   PTLG+LM           
Sbjct: 1   MADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGVATSKPPTLGTLM----------- 60

Query: 69  HGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSA 128
             +V P  G L      S G      G A D +      +   E   QP  +++ G    
Sbjct: 61  ENEV-PATGLL----ASSNGTDHTSKGHAGDEE-----NHRKEEPQPQPQPQEQQGSGEI 120

Query: 129 HVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTT 185
             RS+TS SSSS+++ Q GRR   KKKGL +KI+EKL GGKHKEE  H    +T T
Sbjct: 121 E-RSSTSSSSSSEDDGQGGRR---KKKGLREKIKEKLTGGKHKEEQRHKASVSTET 151

[Close]

BLAST of Lsi11G011220 vs. NCBI nr
Match: gi|225428392|ref|XP_002283605.1| (PREDICTED: late embryogenesis abundant protein-like [Vitis vinifera])

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-19
Identity = 85/188 (45.21%), Postives = 99/188 (52.66%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVA-TKPGPTLGSLMFDIGGGGGDG 68
           MAD+RDEHGNPI+LTD+HGNPV LTDEHGNPM LTGVA T P  T  + + D        
Sbjct: 1   MADLRDEHGNPIQLTDQHGNPVQLTDEHGNPMHLTGVASTHPITTTTAPVHDADA----- 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSS 128
                            G       GHG A  A       +G    A +P E    GG  
Sbjct: 61  -------------LKTTGESHPPTSGHGIADQAV------HGGAPVAAEPAE---GGGGE 120

Query: 129 AH--VRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTA 188
            H   R ++S SSSS+++ Q GRR    KKGL +KI+EKL GGKHKEE  H   PTT  A
Sbjct: 121 VHHEKRESSSSSSSSEDDGQGGRR----KKGLKEKIKEKLTGGKHKEEQGH--APTTGVA 155

Query: 189 IETAPPTT 194
           I T   TT
Sbjct: 181 ITTTTTTT 155

[Close]

BLAST of Lsi11G011220 vs. NCBI nr
Match: gi|595801370|ref|XP_007201813.1| (hypothetical protein PRUPE_ppa010975mg [Prunus persica])

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 88/200 (44.00%), Postives = 113/200 (56.50%), Query Frame = 1


Query: 4   IRMAKMADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLM---FDI 63
           ++  +MA IRDE+GN ++LTD+HGNPV LTDEHGNPM LTGVAT      G+       +
Sbjct: 18  VKNTQMAQIRDEYGNLVQLTDEHGNPVELTDEHGNPMHLTGVATSTEAETGTYTGSGVHV 77

Query: 64  GGGGGDGGHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEE 123
            G G  GG+ + G  LG    G G + G+   G    SD      GG G+  Q  QPH  
Sbjct: 78  PGSGTTGGYEEHGGALG----GAGVATGLGMFGDKQTSDQPHGYDGGLGEHRQQ-QPH-- 137

Query: 124 DEDGGSSAHV-RSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFT- 183
             DGG +    RS +S SSSS+++ Q GRR   KKKGL +KI+EKL GGKHK++      
Sbjct: 138 --DGGVTGEARRSGSSSSSSSEDDGQGGRR---KKKGLKEKIKEKLTGGKHKDDAQQQAY 197

Query: 184 ----PPTTTTAIETAPPTTS 195
                 T T A+ TA  TT+
Sbjct: 198 GQEQGQTHTIAVGTAITTTA 205

[Close]

BLAST of Lsi11G011220 vs. NCBI nr
Match: gi|349844874|gb|AEQ19906.1| (dehydrin 4 [Vitis yeshanensis])

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 85/189 (44.97%), Postives = 98/189 (51.85%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVA-TKPGPTLGSLMFDIGGGGGDG 68
           MAD+RDEHGNPI+LTD+HGNPV LTDEHGNPM LTGVA T P  T               
Sbjct: 1   MADLRDEHGNPIQLTDQHGNPVQLTDEHGNPMHLTGVASTHPITTT-------------- 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSS 128
                 P   +      G       GHG A  A       +G    A +P    E GG  
Sbjct: 61  ---TAAPVHDADALKTTGESHPPTFGHGTADQAM------HGGAPVAAEP---AEGGGGV 120

Query: 129 AH--VRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTA 188
            H   R ++S SSSS+++ Q GRR    KKGL +KI+EKL GGKHKEE  H   PTT  A
Sbjct: 121 VHHEKRESSSSSSSSEDDGQGGRR----KKGLKEKIKEKLTGGKHKEEQGH--APTTGVA 157

Query: 189 IETAPPTTS 195
           I T   T S
Sbjct: 181 ITTTTTTGS 157

[Close]

BLAST of Lsi11G011220 vs. NCBI nr
Match: gi|821324906|ref|NP_001295705.1| (embryogenic cell protein 40-like [Jatropha curcas])

HSP 1 Score: 98.2 bits (243), Expect = 1.7e-17
Identity = 74/166 (44.58%), Postives = 94/166 (56.63%), Query Frame = 1


Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVAT-KPGPTLGSLMFDIGGGGGDG 68
           MAD+RDE+GNPIRLTD+HGNPV LTDEHGNP+ +TG+AT KP      L  D+       
Sbjct: 1   MADLRDEYGNPIRLTDEHGNPVELTDEHGNPVHITGLATSKPATIANVLQIDV------- 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSS 128
                 P  G L      S      GH          GG   +  +A QP ++ ++    
Sbjct: 61  ------PDTGLL-----ASTEEPPKGH-----TGEHVGGAEPEPVKAEQPQQQQQE---- 120

Query: 129 AHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEE 174
              RS++S SSSS+++ Q GRR   KKKGL +KI+EKL GGKHKEE
Sbjct: 121 -LERSSSSSSSSSEDDEQGGRR---KKKGLKEKIKEKLTGGKHKEE 135

The following BLAST results are available for this feature:

BLAST of Lsi11G011220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DHLEA_ARATH	1.2e-13	41.58	Probable dehydrin LEA OS=Arabidopsis thaliana GN=LEA PE=2 SV=1	[more]
DHLE_RAPSA	8.3e-12	37.43	Late embryogenesis abundant protein OS=Raphanus sativus PE=2 SV=1	[more]
ECP40_DAUCA	3.0e-09	40.27	Embryogenic cell protein 40 OS=Daucus carota GN=ECP40 PE=1 SV=1	[more]

BLAST of Lsi11G011220 vs. TrEMBL


Match Name	E-value	Identity	Description
V9M5C3_MANES	1.4e-21	46.59	Dehydrin protein OS=Manihot esculenta GN=LTI30 PE=2 SV=1	[more]
F6I0M9_VITVI	2.9e-19	45.21	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g04390 PE=3 SV=...	[more]
M5VP39_PRUPE	1.4e-18	44.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010975mg PE=3 SV=1	[more]
G4XR61_9ROSI	1.4e-18	44.97	Dehydrin 4 OS=Vitis yeshanensis PE=2 SV=1	[more]
E7BXD8_JATCU	1.2e-17	44.58	Dehydrin OS=Jatropha curcas GN=DHN-1 PE=2 SV=1	[more]

BLAST of Lsi11G011220 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21490.1	6.5e-15	41.58	dehydrin LEA	[more]
AT4G39130.1	4.1e-09	69.23	Dehydrin family protein	[more]
AT5G66400.1	3.3e-06	36.20	Dehydrin family protein	[more]

BLAST of Lsi11G011220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|442022395\|gb\|AGC51773.1\|	2.0e-21	46.59	dehydrin protein [Manihot esculenta]	[more]
gi\|225428392\|ref\|XP_002283605.1\|	4.1e-19	45.21	PREDICTED: late embryogenesis abundant protein-like [Vitis vinifera]	[more]
gi\|595801370\|ref\|XP_007201813.1\|	2.0e-18	44.00	hypothetical protein PRUPE_ppa010975mg [Prunus persica]	[more]
gi\|349844874\|gb\|AEQ19906.1\|	2.0e-18	44.97	dehydrin 4 [Vitis yeshanensis]	[more]
gi\|821324906\|ref\|NP_001295705.1\|	1.7e-17	44.58	embryogenic cell protein 40-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009415	response to water
GO:0006950	response to stress

Vocabulary: **INTERPRO**
Term	Definition
IPR000167	Dehydrin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009631	cold acclimation
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006950	response to stress
biological_process	GO:0009415	response to water
biological_process	GO:0016114	terpenoid biosynthetic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G011220.1	Lsi11G011220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 31..192 score: 9.5
None	No IPR available	PANTHER	PTHR33346	FAMILY NOT NAMED	coord: 9..60 score: 1.9E-28coord: 87..187 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G011220	Csa2G249810	Cucumber (Chinese Long) v2	culsiB103
Lsi11G011220	CSPI02G12490	Wild cucumber (PI 183967)	cpilsiB097
Lsi11G011220	Cucsa.109370	Cucumber (Gy14) v1	cgylsiB146
Lsi11G011220	CmaCh20G008280	Cucurbita maxima (Rimu)	cmalsiB514
Lsi11G011220	CmoCh19G006930	Cucurbita moschata (Rifu)	cmolsiB457
Lsi11G011220	Cla015906	Watermelon (97103) v1	lsiwmB106
Lsi11G011220	Cla016586	Watermelon (97103) v1	lsiwmB111
Lsi11G011220	MELO3C023323	Melon (DHL92) v3.5.1	lsimeB086
Lsi11G011220	MELO3C013444	Melon (DHL92) v3.5.1	lsimeB096
Lsi11G011220	ClCG11G004140	Watermelon (Charleston Gray)	lsiwcgB085
Lsi11G011220	MELO3C023323.2	Melon (DHL92) v3.6.1	lsimedB090
Lsi11G011220	Cla97C02G031760	Watermelon (97103) v2	lsiwmbB086
Lsi11G011220	Cla97C11G210870	Watermelon (97103) v2	lsiwmbB080
Lsi11G011220	Bhi10G001578	Wax gourd	lsiwgoB128
Lsi11G011220	Bhi05G001121	Wax gourd	lsiwgoB115
Lsi11G011220	Cp4.1LG16g02640	Cucurbita pepo (Zucchini)	cpelsiB231
Lsi11G011220	CsGy2G012510	Cucumber (Gy14) v2	cgyblsiB090
Lsi11G011220	Carg19398	Silver-seed gourd	carlsiB290
Lsi11G011220	CsaV3_2G015030	Cucumber (Chinese Long) v3	cuclsiB109

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi11G011220	Lsi10G003970	Bottle gourd (USVL1VR-Ls)	lsilsiB021

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G011220	Cucumber (Gy14) v1	cgylsiB610
Lsi11G011220	Cucurbita maxima (Rimu)	cmalsiB103
Lsi11G011220	Cucurbita maxima (Rimu)	cmalsiB472
Lsi11G011220	Cucurbita maxima (Rimu)	cmalsiB562
Lsi11G011220	Cucurbita moschata (Rifu)	cmolsiB090
Lsi11G011220	Cucurbita moschata (Rifu)	cmolsiB500
Lsi11G011220	Cucurbita moschata (Rifu)	cmolsiB545
Lsi11G011220	Cucurbita pepo (Zucchini)	cpelsiB199
Lsi11G011220	Cucurbita pepo (Zucchini)	cpelsiB532
Lsi11G011220	Cucurbita pepo (Zucchini)	cpelsiB605
Lsi11G011220	Cucurbita pepo (Zucchini)	cpelsiB662
Lsi11G011220	Wild cucumber (PI 183967)	cpilsiB506
Lsi11G011220	Cucumber (Chinese Long) v2	culsiB494
Lsi11G011220	Watermelon (Charleston Gray)	lsiwcgB097
Lsi11G011220	Cucumber (Gy14) v2	cgyblsiB462
Lsi11G011220	Melon (DHL92) v3.6.1	lsimedB102
Lsi11G011220	Silver-seed gourd	carlsiB157
Lsi11G011220	Silver-seed gourd	carlsiB891
Lsi11G011220	Cucumber (Chinese Long) v3	cuclsiB529