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The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. AAGGACTCCTCAATGTATTTCATTTTGTCATTAAAAAAAGCAAAAATGGCTGATGGTGTCGATACAGTTCTTTATTATATCTGGATGATGAGATAATTCCATCTTGAAAAGAGAAGCAGCCTGGCCCTTGAGTTCTCGAAGCTGAAGATGCCTCGATTCAAACTTCAGTTGTCTAAACTCTGGTTCTTGTCTTACTTGCAATGGCAAGTTTTTTTAGCACGTAGTGTAAATAGTCTCCTTTTTTGTCCTACCGAATAAAGATTGAATCCTTATTTTCGATTGTTTTTATTTGGGGAGGCGGCCGAAATTTTTTTTTTCAGCCAGAGAATGAGCAGCGGTACTAGGGTGATGAGCTCGAGGGCGGAGGAGTCTGAGGTGTCGAGTTTGTGTAATATAGCTTACTTCCCCAGTTTGTTTACACTCCTAGAATTTAGCTAGAATGCCAACACAATCAAGATAGAGATGGTTGTTAAATGTTTTGGATGTGGATTGGTTTCATCACAGAAGCTGACACCTATCATATAAATGTCTAACGTGGCAACCCAAAAGAGAGTACGTGTTAGGCTTAGACAGGTACCCAAGGCTATTTCTTATCCTCTTGAGTGTGTAAATGGAAGGGATGAGAATGGCGAAAATGGCTGATATACAGGACGAGTATGGCAACCCCATCCAACTCACCGACGAGCATGGCAACCCGGTTGTGTTGACTGATGAACATGGCAACCCCGTGAGGCTCTCTGGCGTTGCAACCAAGGTCGGCACGACACTTGGGTCGCTGATCTTTGGCAGTGGTGATGAGGATGGTGGTGGCCATGGCAGTGCTTGTGATGCTGAAGGTAGTTCAGGTGGTGGCAATGGCGACGGCGAGCAGGAGCTGATGCCGGTCGTGGAGCATGAAGATGGCGGCTCAGGTACACATGTTGGCTCGGCCACTTCAGGCTCTAGTCCGGTGAGTCCAAGTTTTTGAATTATAATTAGCCGTTGGACTTTCGTATTCTCGCTCAGTCTCTCGATTTTCATTCTATTCTGGCGTCGCTTAATCATTTTCTCTACAAAGTACACTATAAGGCCTCACCTCTTTGAGGCCTATGGAGTCTTCGTATAGCCTCCCTTAATTGAGACTCGACACCTTTTTTGGAGTCCTTGAGCAAAGGGTCTTTATTCGATACGTGAGGATTCTATTGACATGACTAAATTAAAGGCATGACTTTGATACTAAGTTACAAACGACGACTCTCTACAATGGTATAATATTGTCCATTTTGAGCATAAAGCTTTCAAGGCTTTACTTTGGGTTTCTCTTCGACCCTCGTACCAATGAACATACATTTTTTACTTATAAATTTATGATCATCTTTAATCGAAAGACGTGTCGATTCTATTTAATCCATTTTTTTTTTCCGAAGAAATACAATTACAATTTTTAAAACCATATTAATAAAATAAAATTATGGTATGCAAAATGAACTTTTTGCCATATCCAACTTGCAAATGGTTCGATGCTGAACGAACGCGTATTACGTATATGAGGTATTAAATGGGTTACAATTTAATTGTAATATCCATTATGTTAATCCTAATTTAAGTTTGTAATAAATTATATAATTAAATATCATTCATAGGATTAATTTATTTCCATTTCCAGTCTGAGGAAGAAGAACAAAGTGAGAAGAAGAAGAAGAAGAAGAAGAAAGGACTGACTCAAAAGATAAAAGAGAAGCTAACAGGAGGGAAGCATAGAGAGGAGCAGCCTCAAGCTTCTTCCCCTCCGACCACCGCTGCAACTATAACCGCCGCTCCGATCACCACGAACAAAATTCACCATGGGGAAACCGCTCGTAATATTCTCTAA mRNA sequence AAGGACTCCTCAATGTATTTCATTTTGTCATTAAAAAAAGCAAAAATGGCTGATGGTGTCGATACAGTTCTTTATTATATCTGGATGATGAGATAATTCCATCTTGAAAAGAGAAGCAGCCTGGCCCTTGAGTTCTCGAAGCTGAAGATGCCTCGATTCAAACTTCAGTTGTCTAAACTCTGGTTCTTGTCTTACTTGCAATGGCAAGTTTTTTTAGCACGTAGTGTAAATAGTCTCCTTTTTTGTCCTACCGAATAAAGATTGAATCCTTATTTTCGATTGTTTTTATTTGGGGAGGCGGCCGAAATTTTTTTTTTCAGCCAGAGAATGAGCAGCGGTACTAGGGTGATGAGCTCGAGGGCGGAGGAGTCTGAGGTGTCGAGTTTGTGTAATATAGCTTACTTCCCCAGTTTGTTTACACTCCTAGAATTTAGCTAGAATGCCAACACAATCAAGATAGAGATGGTTGTTAAATGTTTTGGATGTGGATTGGTTTCATCACAGAAGCTGACACCTATCATATAAATGTCTAACGTGGCAACCCAAAAGAGAGTACGTGTTAGGCTTAGACAGGTACCCAAGGCTATTTCTTATCCTCTTGAGTGTGTAAATGGAAGGGATGAGAATGGCGAAAATGGCTGATATACAGGACGAGTATGGCAACCCCATCCAACTCACCGACGAGCATGGCAACCCGGTTGTGTTGACTGATGAACATGGCAACCCCGTGAGGCTCTCTGGCGTTGCAACCAAGGTCGGCACGACACTTGGGTCGCTGATCTTTGGCAGTGGTGATGAGGATGGTGGTGGCCATGGCAGTGCTTGTGATGCTGAAGGTAGTTCAGGTGGTGGCAATGGCGACGGCGAGCAGGAGCTGATGCCGGTCGTGGAGCATGAAGATGGCGGCTCAGGTACACATGTTGGCTCGGCCACTTCAGGCTCTAGTCCGTCTGAGGAAGAAGAACAAAGTGAGAAGAAGAAGAAGAAGAAGAAGAAAGGACTGACTCAAAAGATAAAAGAGAAGCTAACAGGAGGGAAGCATAGAGAGGAGCAGCCTCAAGCTTCTTCCCCTCCGACCACCGCTGCAACTATAACCGCCGCTCCGATCACCACGAACAAAATTCACCATGGGGAAACCGCTCGTAATATTCTCTAA Coding sequence (CDS) ATGGAAGGGATGAGAATGGCGAAAATGGCTGATATACAGGACGAGTATGGCAACCCCATCCAACTCACCGACGAGCATGGCAACCCGGTTGTGTTGACTGATGAACATGGCAACCCCGTGAGGCTCTCTGGCGTTGCAACCAAGGTCGGCACGACACTTGGGTCGCTGATCTTTGGCAGTGGTGATGAGGATGGTGGTGGCCATGGCAGTGCTTGTGATGCTGAAGGTAGTTCAGGTGGTGGCAATGGCGACGGCGAGCAGGAGCTGATGCCGGTCGTGGAGCATGAAGATGGCGGCTCAGGTACACATGTTGGCTCGGCCACTTCAGGCTCTAGTCCGTCTGAGGAAGAAGAACAAAGTGAGAAGAAGAAGAAGAAGAAGAAGAAAGGACTGACTCAAAAGATAAAAGAGAAGCTAACAGGAGGGAAGCATAGAGAGGAGCAGCCTCAAGCTTCTTCCCCTCCGACCACCGCTGCAACTATAACCGCCGCTCCGATCACCACGAACAAAATTCACCATGGGGAAACCGCTCGTAATATTCTCTAA Protein sequence MEGMRMAKMADIQDEYGNPIQLTDEHGNPVVLTDEHGNPVRLSGVATKVGTTLGSLIFGSGDEDGGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSGSSPSEEEEQSEKKKKKKKKGLTQKIKEKLTGGKHREEQPQASSPPTTAATITAAPITTNKIHHGETARNIL
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009415 | response to water |
| GO:0006950 | response to stress |
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000167 | Dehydrin |
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006950 |
response to stress |
| biological_process |
GO:0009415 |
response to water |
| cellular_component |
GO:0005575 |
cellular_component |
| molecular_function |
GO:0003674 |
molecular_function |
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg19398 | Carg19398 | gene |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg19398-RA.CDS.2 | Carg19398-RA.CDS.2 | CDS |
| Carg19398-RA.CDS.1 | Carg19398-RA.CDS.1 | CDS |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg19398-RA.five_prime_UTR.1 | Carg19398-RA.five_prime_UTR.1 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg19398-RA.exon.2 | Carg19398-RA.exon.2 | exon |
| Carg19398-RA.exon.1 | Carg19398-RA.exon.1 | exon |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg19398-RA | Carg19398-RA-protein | polypeptide |
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000167 | Dehydrin | PFAM | PF00257 | Dehydrin | coord: 21..167
e-value: 2.6E-13
score: 50.8 |
| IPR000167 | Dehydrin | PANTHER | PTHR33346 | FAMILY NOT NAMED | coord: 9..168 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 60..181 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 146..174 |
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