MELO3C012962 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C012962
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionChromosome 3B, genomic scaffold, cultivar Chinese Spring
Locationchr4 : 15189993 .. 15190371 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCACAACCCAAAACAATCGAATATTCATAATGGAGTTGAGTTGTGTGCGGTGGTCCGGCAGCCGTGTGTATGTGGCAGCCGGGGTTTTGAGGTGCAAGGCGGGGCCGACGCCGGAGATGAAGAAGAAGAAGAAGAAGATGATGATTATGGGGAGATGGAGAATGGTGTGGAGAAGGATGAAGAAGAGAATAATAATGTTATGGAGATGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATTTACAGAATTTTGATGATGGGTTTACGATGATGATGATGATGGGAGCCATTGGTGAGGATTCTGATGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGTCCTTTGTCCTCTTAG

mRNA sequence

CTCCACAACCCAAAACAATCGAATATTCATAATGGAGTTGAGTTGTGTGCGGTGGTCCGGCAGCCGTGTGTATGTGGCAGCCGGGGTTTTGAGGTGCAAGGCGGGGCCGACGCCGGAGATGAAGAAGAAGAAGAAGAAGATGATGATTATGGGGAGATGGAGAATGGTGTGGAGAAGGATGAAGAAGAGAATAATAATGTTATGGAGATGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATTTACAGAATTTTGATGATGGGTTTACGATGATGATGATGATGGGAGCCATTGGTGAGGATTCTGATGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGTCCTTTGTCCTCTTAG

Coding sequence (CDS)

ATGGAGTTGAGTTGTGTGCGGTGGTCCGGCAGCCGTGTGTATGTGGCAGCCGGGGTTTTGAGGTGCAAGGCGGGGCCGACGCCGGAGATGAAGAAGAAGAAGAAGAAGATGATGATTATGGGGAGATGGAGAATGGTGTGGAGAAGGATGAAGAAGAGAATAATAATGTTATGGAGATGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATTTACAGAATTTTGATGATGGGTTTACGATGATGATGATGATGGGAGCCATTGGTGAGGATTCTGATGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGTCCTTTGTCCTCTTAG

Protein sequence

MELSCVRWSGSRVYVAAGVLRCKAGPTPEMKKKKKKMMIMGRWRMVWRRMKKRIIMLWRCRAHEMRVQGYDRESYLQNFDDGFTMMMMMGAIGEDSDVISRSFSARFAISRPLSS*
Homology
[Close]
BLAST of MELO3C012962 vs. TrEMBL
Match: A0A0A0LAV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G481240 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 9.6e-44
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 1 

Query: 15  VAAGVLRCKAGPTPEMKKKKKKMMIMGRWRMVWRRMKKRIIMLWRCRAHEMRVQGYDRES 74
           V+AGVLRC+A PTPEMKKK    M+MGRWRMVWRR+KKRIIM WRCRAHEMRVQGYDRES
Sbjct: 19  VSAGVLRCRAAPTPEMKKK----MMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRES 78

Query: 75  YLQNFDDGFTMMMMMGAIGEDSDVISRSFSARFAISRPLSS 116
           YLQNFDDGFTMMMMMGA GEDSDVISRSFSARFAISRPLSS
Sbjct: 79  YLQNFDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 115

[Close]
BLAST of MELO3C012962 vs. NCBI nr
Match: gi|700202931|gb|KGN58064.1| (hypothetical protein Csa_3G481240 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-43
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 1 

Query: 15  VAAGVLRCKAGPTPEMKKKKKKMMIMGRWRMVWRRMKKRIIMLWRCRAHEMRVQGYDRES 74
           V+AGVLRC+A PTPEMKKK    M+MGRWRMVWRR+KKRIIM WRCRAHEMRVQGYDRES
Sbjct: 19  VSAGVLRCRAAPTPEMKKK----MMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRES 78

Query: 75  YLQNFDDGFTMMMMMGAIGEDSDVISRSFSARFAISRPLSS 116
           YLQNFDDGFTMMMMMGA GEDSDVISRSFSARFAISRPLSS
Sbjct: 79  YLQNFDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 115

The following BLAST results are available for this feature:
BLAST of MELO3C012962 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAV8_CUCSA9.6e-4489.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G481240 PE=4 SV=1[more]
BLAST of MELO3C012962 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202931|gb|KGN58064.1|1.4e-4389.11hypothetical protein Csa_3G481240 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU60411melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012962T1MELO3C012962T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU60411MU60411transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 37..109
score: 9.1
NoneNo IPR availablePANTHERPTHR33168:SF6SUBFAMILY NOT NAMEDcoord: 37..109
score: 9.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C012962Csa3G481240Cucumber (Chinese Long) v2cumeB212
MELO3C012962Bhi01G002649Wax gourdmewgoB397
MELO3C012962CSPI03G24160Wild cucumber (PI 183967)cpimeB205
MELO3C012962Cucsa.062090Cucumber (Gy14) v1cgymeB052
MELO3C012962CsGy3G023100Cucumber (Gy14) v2cgybmeB186
MELO3C012962Carg04258Silver-seed gourdcarmeB0204
MELO3C012962CsaV3_3G025100Cucumber (Chinese Long) v3cucmeB220
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012962Cucumber (Chinese Long) v3cucmeB571
MELO3C012962Watermelon (97103) v2mewmbB344
MELO3C012962Watermelon (97103) v2mewmbB365
MELO3C012962Wax gourdmewgoB432
MELO3C012962Melon (DHL92) v3.5.1memeB084
MELO3C012962Melon (DHL92) v3.5.1memeB136
MELO3C012962Cucumber (Gy14) v1cgymeB171
MELO3C012962Cucumber (Gy14) v1cgymeB581
MELO3C012962Cucurbita maxima (Rimu)cmameB230
MELO3C012962Cucurbita maxima (Rimu)cmameB332
MELO3C012962Cucurbita maxima (Rimu)cmameB427
MELO3C012962Cucurbita maxima (Rimu)cmameB840
MELO3C012962Cucurbita moschata (Rifu)cmomeB216
MELO3C012962Cucurbita moschata (Rifu)cmomeB325
MELO3C012962Cucurbita moschata (Rifu)cmomeB417
MELO3C012962Cucurbita moschata (Rifu)cmomeB823
MELO3C012962Wild cucumber (PI 183967)cpimeB560
MELO3C012962Cucumber (Chinese Long) v2cumeB552
MELO3C012962Watermelon (Charleston Gray)mewcgB312
MELO3C012962Watermelon (Charleston Gray)mewcgB342
MELO3C012962Watermelon (97103) v1mewmB344
MELO3C012962Watermelon (97103) v1mewmB363
MELO3C012962Watermelon (97103) v1mewmB386
MELO3C012962Cucurbita pepo (Zucchini)cpemeB132
MELO3C012962Cucurbita pepo (Zucchini)cpemeB306
MELO3C012962Cucurbita pepo (Zucchini)cpemeB518
MELO3C012962Cucurbita pepo (Zucchini)cpemeB573
MELO3C012962Bottle gourd (USVL1VR-Ls)lsimeB213
MELO3C012962Bottle gourd (USVL1VR-Ls)lsimeB436
MELO3C012962Cucumber (Gy14) v2cgybmeB489
MELO3C012962Silver-seed gourdcarmeB0125
MELO3C012962Silver-seed gourdcarmeB0574
MELO3C012962Silver-seed gourdcarmeB0742
MELO3C012962Silver-seed gourdcarmeB0997