MELO3C012962T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C012962T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionChromosome 3B, genomic scaffold, cultivar Chinese Spring
Locationchr4 : 15189993 .. 15190371 (+)
Sequence length379
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCACAACCCAAAACAATCGAATATTCATAATGGAGTTGAGTTGTGTGCGGTGGTCCGGCAGCCGTGTGTATGTGGCAGCCGGGGTTTTGAGGTGCAAGGCGGGGCCGACGCCGGAGATGAAGAAGAAGAAGAAGAAGATGATGATTATGGGGAGATGGAGAATGGTGTGGAGAAGGATGAAGAAGAGAATAATAATGTTATGGAGATGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATTTACAGAATTTTGATGATGGGTTTACGATGATGATGATGATGGGAGCCATTGGTGAGGATTCTGATGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGTCCTTTGTCCTCTTAG

mRNA sequence

CTCCACAACCCAAAACAATCGAATATTCATAATGGAGTTGAGTTGTGTGCGGTGGTCCGGCAGCCGTGTGTATGTGGCAGCCGGGGTTTTGAGGTGCAAGGCGGGGCCGACGCCGGAGATGAAGAAGAAGAAGAAGAAGATGATGATTATGGGGAGATGGAGAATGGTGTGGAGAAGGATGAAGAAGAGAATAATAATGTTATGGAGATGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATTTACAGAATTTTGATGATGGGTTTACGATGATGATGATGATGGGAGCCATTGGTGAGGATTCTGATGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGTCCTTTGTCCTCTTAG

Coding sequence (CDS)

ATGGAGTTGAGTTGTGTGCGGTGGTCCGGCAGCCGTGTGTATGTGGCAGCCGGGGTTTTGAGGTGCAAGGCGGGGCCGACGCCGGAGATGAAGAAGAAGAAGAAGAAGATGATGATTATGGGGAGATGGAGAATGGTGTGGAGAAGGATGAAGAAGAGAATAATAATGTTATGGAGATGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATTTACAGAATTTTGATGATGGGTTTACGATGATGATGATGATGGGAGCCATTGGTGAGGATTCTGATGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGTCCTTTGTCCTCTTAG

Protein sequence

MELSCVRWSGSRVYVAAGVLRCKAGPTPEMKKKKKKMMIMGRWRMVWRRMKKRIIMLWRCRAHEMRVQGYDRESYLQNFDDGFTMMMMMGAIGEDSDVISRSFSARFAISRPLSS*
Homology
[Close]
BLAST of MELO3C012962T1 vs. TrEMBL
Match: A0A0A0LAV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G481240 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 9.6e-44
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 1 

Query: 15  VAAGVLRCKAGPTPEMKKKKKKMMIMGRWRMVWRRMKKRIIMLWRCRAHEMRVQGYDRES 74
           V+AGVLRC+A PTPEMKKK    M+MGRWRMVWRR+KKRIIM WRCRAHEMRVQGYDRES
Sbjct: 19  VSAGVLRCRAAPTPEMKKK----MMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRES 78

Query: 75  YLQNFDDGFTMMMMMGAIGEDSDVISRSFSARFAISRPLSS 116
           YLQNFDDGFTMMMMMGA GEDSDVISRSFSARFAISRPLSS
Sbjct: 79  YLQNFDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 115

[Close]
BLAST of MELO3C012962T1 vs. NCBI nr
Match: gi|700202931|gb|KGN58064.1| (hypothetical protein Csa_3G481240 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-43
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 1 

Query: 15  VAAGVLRCKAGPTPEMKKKKKKMMIMGRWRMVWRRMKKRIIMLWRCRAHEMRVQGYDRES 74
           V+AGVLRC+A PTPEMKKK    M+MGRWRMVWRR+KKRIIM WRCRAHEMRVQGYDRES
Sbjct: 19  VSAGVLRCRAAPTPEMKKK----MMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRES 78

Query: 75  YLQNFDDGFTMMMMMGAIGEDSDVISRSFSARFAISRPLSS 116
           YLQNFDDGFTMMMMMGA GEDSDVISRSFSARFAISRPLSS
Sbjct: 79  YLQNFDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 115

The following BLAST results are available for this feature:
BLAST of MELO3C012962T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAV8_CUCSA9.6e-4489.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G481240 PE=4 SV=1[more]
BLAST of MELO3C012962T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202931|gb|KGN58064.1|1.4e-4389.11hypothetical protein Csa_3G481240 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C012962MELO3C012962gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C012962T1MELO3C012962T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C012962T1.cds1MELO3C012962T1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 37..109
score: 9.1
NoneNo IPR availablePANTHERPTHR33168:SF6SUBFAMILY NOT NAMEDcoord: 37..109
score: 9.1