Carg04258 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04258
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Location	Cucurbita_argyrosperma_scaffold_044 : 1089695 .. 1090054 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGAGTTGCTTAAGGGGCGCCGGCGGCGGGATTGGGTACGTGGAAAGAGGGTACTACTCGGCGGTGACAGTGGCGGTTTTGGAGAAGACGACGGCGAGGTGGAGAGTGGTGTGGCGGAGGCTGAAGAAGGAGAAGAAGAGAATGTTCAGGTGTGGTATGAGTGGGGCTCGTGAGGTGCACGTGCCGTATAATCCAAAGACGTATTTGCAGAACTTCGATGATGGGTCTGTGATGATGGTCGGCGACGATGATCCTGACGCGATTAGTCGATCTTTCTCCGCTCGTTTCGCCATATCCTCCGCCATTTTGCGAAGGCCGCCGCCTGAGTTTGTGGTTCTGAAACTGACAGCTTAG

mRNA sequence

ATGAATTTGAGTTGCTTAAGGGGCGCCGGCGGCGGGATTGGGTACGTGGAAAGAGGGTACTACTCGGCGGTGACAGTGGCGGTTTTGGAGAAGACGACGGCGAGGTGGAGAGTGGTGTGGCGGAGGCTGAAGAAGGAGAAGAAGAGAATGTTCAGGTGTGGTATGAGTGGGGCTCGTGAGGTGCACGTGCCGTATAATCCAAAGACGTATTTGCAGAACTTCGATGATGGGTCTGTGATGATGGTCGGCGACGATGATCCTGACGCGATTAGTCGATCTTTCTCCGCTCGTTTCGCCATATCCTCCGCCATTTTGCGAAGGCCGCCGCCTGAGTTTGTGGTTCTGAAACTGACAGCTTAG

Coding sequence (CDS)

ATGAATTTGAGTTGCTTAAGGGGCGCCGGCGGCGGGATTGGGTACGTGGAAAGAGGGTACTACTCGGCGGTGACAGTGGCGGTTTTGGAGAAGACGACGGCGAGGTGGAGAGTGGTGTGGCGGAGGCTGAAGAAGGAGAAGAAGAGAATGTTCAGGTGTGGTATGAGTGGGGCTCGTGAGGTGCACGTGCCGTATAATCCAAAGACGTATTTGCAGAACTTCGATGATGGGTCTGTGATGATGGTCGGCGACGATGATCCTGACGCGATTAGTCGATCTTTCTCCGCTCGTTTCGCCATATCCTCCGCCATTTTGCGAAGGCCGCCGCCTGAGTTTGTGGTTCTGAAACTGACAGCTTAG

Protein sequence

MNLSCLRGAGGGIGYVERGYYSAVTVAVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRRPPPEFVVLKLTA

Homology

[Close]

BLAST of Carg04258 vs. NCBI nr
Match: KDO51221.1 (hypothetical protein CISIN_1g044132mg [Citrus sinensis])

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV+RGY   ++    +    T RWR++WR++K+EKKR+F C  SG+  VHVPY+P TY Q
Sbjct: 61  YVKRGYDRVLSFNGLITGSKTPRWRLLWRKIKREKKRIFDCS-SGSTNVHVPYDPCTYSQ 120

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 121 NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Carg04258 vs. NCBI nr
Match: GAY51209.1 (hypothetical protein CUMW_132530 [Citrus unshiu])

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV+RGY   ++    +    T RWR++WR++K++KKR+F C  SG  +VHVPY+P TY Q
Sbjct: 61  YVKRGYDRVLSFNGLITGSKTPRWRLLWRKIKRDKKRIFDCS-SGGTDVHVPYDPYTYSQ 120

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 121 NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Carg04258 vs. NCBI nr
Match: ESR40256.1 (hypothetical protein CICLE_v10026796mg [Citrus clementina])

HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV RGY   ++    +    T RWR++WR++K+EK+R+F C  SG+  VHVPY+P TY Q
Sbjct: 20  YVRRGYDRVLSFNGLITGSKTPRWRLLWRKIKREKERIFDCS-SGSTNVHVPYDPYTYSQ 79

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 80  NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 109

[Close]

BLAST of Carg04258 vs. NCBI nr
Match: XP_015867177.1 (uncharacterized protein LOC107404700 [Ziziphus jujuba])

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 15  YVER-GYYSAVTVAVLEKTT-----ARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPK 74
           YV R GY S+V+   +  ++      RWR++W ++KKEKKR+F C  S    VH+PY+P 
Sbjct: 20  YVRRSGYGSSVSFGAVAASSKMIVMPRWRMLWIKIKKEKKRLFDC--STYTPVHLPYDPY 79

Query: 75  TYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           TY QNFD GS       DPD +SRSFSARFA+ S IL++
Sbjct: 80  TYAQNFDQGSNWA----DPDNLSRSFSARFAVPSRILKK 112

[Close]

BLAST of Carg04258 vs. NCBI nr
Match: OAY36770.1 (hypothetical protein MANES_11G047000 [Manihot esculenta])

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 28  VLEKTTA----RWRVVWRRLKKEKKRMFRCGMSG-AREVHVPYNPKTYLQNFDDGSVMMV 87
           VLE +TA    RWR++WR++ +EKK++F C  S  +R +H  Y+P TY QNFD GS+   
Sbjct: 33  VLESSTALRRPRWRLLWRKIMREKKKIFDCSSSACSRRMHFSYDPYTYSQNFDQGSMW-- 92

Query: 88  GDDDPDAISRSFSARFAISSAILRRPPP 111
              DPD +SRSFSARFA+SS I  +  P
Sbjct: 93  --SDPDNMSRSFSARFAVSSRIFEKTHP 116

[Close]

BLAST of Carg04258 vs. TrEMBL
Match: tr|A0A067EJZ4|A0A067EJZ4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044132mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV+RGY   ++    +    T RWR++WR++K+EKKR+F C  SG+  VHVPY+P TY Q
Sbjct: 61  YVKRGYDRVLSFNGLITGSKTPRWRLLWRKIKREKKRIFDCS-SGSTNVHVPYDPCTYSQ 120

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 121 NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Carg04258 vs. TrEMBL
Match: tr|A0A2H5PFR9|A0A2H5PFR9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_132530 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV+RGY   ++    +    T RWR++WR++K++KKR+F C  SG  +VHVPY+P TY Q
Sbjct: 61  YVKRGYDRVLSFNGLITGSKTPRWRLLWRKIKRDKKRIFDCS-SGGTDVHVPYDPYTYSQ 120

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 121 NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Carg04258 vs. TrEMBL
Match: tr|V4ST02|V4ST02_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026796mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.1e-15
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV RGY   ++    +    T RWR++WR++K+EK+R+F C  SG+  VHVPY+P TY Q
Sbjct: 20  YVRRGYDRVLSFNGLITGSKTPRWRLLWRKIKREKERIFDCS-SGSTNVHVPYDPYTYSQ 79

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 80  NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 109

[Close]

BLAST of Carg04258 vs. TrEMBL
Match: tr|A0A2C9UYG8|A0A2C9UYG8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G047000 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.3e-13
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 28  VLEKTTA----RWRVVWRRLKKEKKRMFRCGMSG-AREVHVPYNPKTYLQNFDDGSVMMV 87
           VLE +TA    RWR++WR++ +EKK++F C  S  +R +H  Y+P TY QNFD GS+   
Sbjct: 33  VLESSTALRRPRWRLLWRKIMREKKKIFDCSSSACSRRMHFSYDPYTYSQNFDQGSMW-- 92

Query: 88  GDDDPDAISRSFSARFAISSAILRRPPP 111
              DPD +SRSFSARFA+SS I  +  P
Sbjct: 93  --SDPDNMSRSFSARFAVSSRIFEKTHP 116

[Close]

BLAST of Carg04258 vs. TrEMBL
Match: tr|A0A061GBI6|A0A061GBI6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_028719 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-12
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 14  GYVERGY--YSAVTVAVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYL 73
           GY +  Y    ++ V V      RWR++WRRL +EKK++F C  S +  VHV Y+P TY 
Sbjct: 43  GYAKSQYDRMHSINVLVTRSKLPRWRMLWRRLMREKKKIFDC--SSSTRVHVSYDPYTYA 102

Query: 74  QNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           QNFD G +      DPD +SRSFSARFA+ S +  +
Sbjct: 103 QNFDQGLM----SADPDDLSRSFSARFAVPSRVFEK 132

The following BLAST results are available for this feature:

BLAST of Carg04258 vs. NCBI nr


Match Name	E-value	Identity	Description
KDO51221.1	3.2e-15	49.47	hypothetical protein CISIN_1g044132mg [Citrus sinensis]	[more]
GAY51209.1	4.1e-15	48.42	hypothetical protein CUMW_132530 [Citrus unshiu]	[more]
ESR40256.1	9.2e-15	48.42	hypothetical protein CICLE_v10026796mg [Citrus clementina]	[more]
XP_015867177.1	5.1e-13	48.48	uncharacterized protein LOC107404700 [Ziziphus jujuba]	[more]
OAY36770.1	5.1e-13	50.00	hypothetical protein MANES_11G047000 [Manihot esculenta]	[more]

BLAST of Carg04258 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg04258 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04258 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A067EJZ4\|A0A067EJZ4_CITSI	2.1e-15	49.47	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044132mg PE=4 SV=1	[more]
tr\|A0A2H5PFR9\|A0A2H5PFR9_CITUN	2.7e-15	48.42	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_132530 PE=4 SV=1	[more]
tr\|V4ST02\|V4ST02_9ROSI	6.1e-15	48.42	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026796mg PE=4 ...	[more]
tr\|A0A2C9UYG8\|A0A2C9UYG8_MANES	3.3e-13	50.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G047000 PE=4 SV=...	[more]
tr\|A0A061GBI6\|A0A061GBI6_THECC	2.2e-12	44.79	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_028719 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04258-RA	Carg04258-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 30..106
None	No IPR available	PANTHER	PTHR33168:SF6	SUBFAMILY NOT NAMED	coord: 30..106

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04258	Cla012677	Watermelon (97103) v1	carwmB0192
Carg04258	Csa3G481240	Cucumber (Chinese Long) v2	carcuB0219
Carg04258	MELO3C012962	Melon (DHL92) v3.5.1	carmeB0204
Carg04258	ClCG07G013070	Watermelon (Charleston Gray)	carwcgB0199
Carg04258	CSPI03G24160	Wild cucumber (PI 183967)	carcpiB0226
Carg04258	Cucsa.062090	Cucumber (Gy14) v1	carcgyB0234
Carg04258	CmoCh01G001190	Cucurbita moschata (Rifu)	carcmoB0285
Carg04258	CmoCh11G006030	Cucurbita moschata (Rifu)	carcmoB0277
Carg04258	Cp4.1LG02g14690	Cucurbita pepo (Zucchini)	carcpeB0285
Carg04258	MELO3C012962.2	Melon (DHL92) v3.6.1	carmedB0209
Carg04258	CsaV3_3G025100	Cucumber (Chinese Long) v3	carcucB0227

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04258	Carg12186	Silver-seed gourd	carcarB042

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04258	Silver-seed gourd	carcarB139
Carg04258	Silver-seed gourd	carcarB234
Carg04258	Silver-seed gourd	carcarB240
Carg04258	Cucumber (Gy14) v2	carcgybB0212
Carg04258	Cucumber (Gy14) v2	carcgybB0218
Carg04258	Cucumber (Gy14) v1	carcgyB0247
Carg04258	Cucurbita maxima (Rimu)	carcmaB0276
Carg04258	Cucurbita maxima (Rimu)	carcmaB0277
Carg04258	Cucurbita maxima (Rimu)	carcmaB0278
Carg04258	Cucurbita maxima (Rimu)	carcmaB0283
Carg04258	Cucurbita moschata (Rifu)	carcmoB0283
Carg04258	Cucurbita moschata (Rifu)	carcmoB0284
Carg04258	Cucurbita moschata (Rifu)	carcmoB0289
Carg04258	Cucurbita pepo (Zucchini)	carcpeB0280
Carg04258	Cucurbita pepo (Zucchini)	carcpeB0283
Carg04258	Cucurbita pepo (Zucchini)	carcpeB0287
Carg04258	Wild cucumber (PI 183967)	carcpiB0231
Carg04258	Wild cucumber (PI 183967)	carcpiB0236
Carg04258	Cucumber (Chinese Long) v2	carcuB0229
Carg04258	Cucumber (Chinese Long) v3	carcucB0233
Carg04258	Bottle gourd (USVL1VR-Ls)	carlsiB176
Carg04258	Bottle gourd (USVL1VR-Ls)	carlsiB182
Carg04258	Melon (DHL92) v3.5.1	carmeB0198
Carg04258	Melon (DHL92) v3.5.1	carmeB0209
Carg04258	Melon (DHL92) v3.6.1	carmedB0203
Carg04258	Watermelon (Charleston Gray)	carwcgB0190
Carg04258	Watermelon (97103) v1	carwmB0187
Carg04258	Watermelon (97103) v2	carwmbB0205
Carg04258	Watermelon (97103) v2	carwmbB0209
Carg04258	Wax gourd	carwgoB0249