Carg04258-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04258-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Location	Cucurbita_argyrosperma_scaffold_044 : 1089695 .. 1090054 (+)
Sequence length	360

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGAGTTGCTTAAGGGGCGCCGGCGGCGGGATTGGGTACGTGGAAAGAGGGTACTACTCGGCGGTGACAGTGGCGGTTTTGGAGAAGACGACGGCGAGGTGGAGAGTGGTGTGGCGGAGGCTGAAGAAGGAGAAGAAGAGAATGTTCAGGTGTGGTATGAGTGGGGCTCGTGAGGTGCACGTGCCGTATAATCCAAAGACGTATTTGCAGAACTTCGATGATGGGTCTGTGATGATGGTCGGCGACGATGATCCTGACGCGATTAGTCGATCTTTCTCCGCTCGTTTCGCCATATCCTCCGCCATTTTGCGAAGGCCGCCGCCTGAGTTTGTGGTTCTGAAACTGACAGCTTAG

mRNA sequence

ATGAATTTGAGTTGCTTAAGGGGCGCCGGCGGCGGGATTGGGTACGTGGAAAGAGGGTACTACTCGGCGGTGACAGTGGCGGTTTTGGAGAAGACGACGGCGAGGTGGAGAGTGGTGTGGCGGAGGCTGAAGAAGGAGAAGAAGAGAATGTTCAGGTGTGGTATGAGTGGGGCTCGTGAGGTGCACGTGCCGTATAATCCAAAGACGTATTTGCAGAACTTCGATGATGGGTCTGTGATGATGGTCGGCGACGATGATCCTGACGCGATTAGTCGATCTTTCTCCGCTCGTTTCGCCATATCCTCCGCCATTTTGCGAAGGCCGCCGCCTGAGTTTGTGGTTCTGAAACTGACAGCTTAG

Coding sequence (CDS)

ATGAATTTGAGTTGCTTAAGGGGCGCCGGCGGCGGGATTGGGTACGTGGAAAGAGGGTACTACTCGGCGGTGACAGTGGCGGTTTTGGAGAAGACGACGGCGAGGTGGAGAGTGGTGTGGCGGAGGCTGAAGAAGGAGAAGAAGAGAATGTTCAGGTGTGGTATGAGTGGGGCTCGTGAGGTGCACGTGCCGTATAATCCAAAGACGTATTTGCAGAACTTCGATGATGGGTCTGTGATGATGGTCGGCGACGATGATCCTGACGCGATTAGTCGATCTTTCTCCGCTCGTTTCGCCATATCCTCCGCCATTTTGCGAAGGCCGCCGCCTGAGTTTGTGGTTCTGAAACTGACAGCTTAG

Protein sequence

MNLSCLRGAGGGIGYVERGYYSAVTVAVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRRPPPEFVVLKLTA

Homology

[Close]

BLAST of Carg04258-RA vs. NCBI nr
Match: KDO51221.1 (hypothetical protein CISIN_1g044132mg [Citrus sinensis])

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV+RGY   ++    +    T RWR++WR++K+EKKR+F C  SG+  VHVPY+P TY Q
Sbjct: 61  YVKRGYDRVLSFNGLITGSKTPRWRLLWRKIKREKKRIFDCS-SGSTNVHVPYDPCTYSQ 120

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 121 NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Carg04258-RA vs. NCBI nr
Match: GAY51209.1 (hypothetical protein CUMW_132530 [Citrus unshiu])

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV+RGY   ++    +    T RWR++WR++K++KKR+F C  SG  +VHVPY+P TY Q
Sbjct: 61  YVKRGYDRVLSFNGLITGSKTPRWRLLWRKIKRDKKRIFDCS-SGGTDVHVPYDPYTYSQ 120

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 121 NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Carg04258-RA vs. NCBI nr
Match: ESR40256.1 (hypothetical protein CICLE_v10026796mg [Citrus clementina])

HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV RGY   ++    +    T RWR++WR++K+EK+R+F C  SG+  VHVPY+P TY Q
Sbjct: 20  YVRRGYDRVLSFNGLITGSKTPRWRLLWRKIKREKERIFDCS-SGSTNVHVPYDPYTYSQ 79

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 80  NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 109

[Close]

BLAST of Carg04258-RA vs. NCBI nr
Match: XP_015867177.1 (uncharacterized protein LOC107404700 [Ziziphus jujuba])

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 15  YVER-GYYSAVTVAVLEKTT-----ARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPK 74
           YV R GY S+V+   +  ++      RWR++W ++KKEKKR+F C  S    VH+PY+P 
Sbjct: 20  YVRRSGYGSSVSFGAVAASSKMIVMPRWRMLWIKIKKEKKRLFDC--STYTPVHLPYDPY 79

Query: 75  TYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           TY QNFD GS       DPD +SRSFSARFA+ S IL++
Sbjct: 80  TYAQNFDQGSNWA----DPDNLSRSFSARFAVPSRILKK 112

[Close]

BLAST of Carg04258-RA vs. NCBI nr
Match: OAY36770.1 (hypothetical protein MANES_11G047000 [Manihot esculenta])

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 28  VLEKTTA----RWRVVWRRLKKEKKRMFRCGMSG-AREVHVPYNPKTYLQNFDDGSVMMV 87
           VLE +TA    RWR++WR++ +EKK++F C  S  +R +H  Y+P TY QNFD GS+   
Sbjct: 33  VLESSTALRRPRWRLLWRKIMREKKKIFDCSSSACSRRMHFSYDPYTYSQNFDQGSMW-- 92

Query: 88  GDDDPDAISRSFSARFAISSAILRRPPP 111
              DPD +SRSFSARFA+SS I  +  P
Sbjct: 93  --SDPDNMSRSFSARFAVSSRIFEKTHP 116

[Close]

BLAST of Carg04258-RA vs. TrEMBL
Match: tr|A0A067EJZ4|A0A067EJZ4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044132mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV+RGY   ++    +    T RWR++WR++K+EKKR+F C  SG+  VHVPY+P TY Q
Sbjct: 61  YVKRGYDRVLSFNGLITGSKTPRWRLLWRKIKREKKRIFDCS-SGSTNVHVPYDPCTYSQ 120

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 121 NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Carg04258-RA vs. TrEMBL
Match: tr|A0A2H5PFR9|A0A2H5PFR9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_132530 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV+RGY   ++    +    T RWR++WR++K++KKR+F C  SG  +VHVPY+P TY Q
Sbjct: 61  YVKRGYDRVLSFNGLITGSKTPRWRLLWRKIKRDKKRIFDCS-SGGTDVHVPYDPYTYSQ 120

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 121 NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Carg04258-RA vs. TrEMBL
Match: tr|V4ST02|V4ST02_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026796mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.1e-15
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 15  YVERGYYSAVTV--AVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYLQ 74
           YV RGY   ++    +    T RWR++WR++K+EK+R+F C  SG+  VHVPY+P TY Q
Sbjct: 20  YVRRGYDRVLSFNGLITGSKTPRWRLLWRKIKREKERIFDCS-SGSTNVHVPYDPYTYSQ 79

Query: 75  NFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           NFD G V      DPD  SRSFSARFA+ S + ++
Sbjct: 80  NFDQGYVWA----DPDNASRSFSARFAVPSRVFQK 109

[Close]

BLAST of Carg04258-RA vs. TrEMBL
Match: tr|A0A2C9UYG8|A0A2C9UYG8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G047000 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.3e-13
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 28  VLEKTTA----RWRVVWRRLKKEKKRMFRCGMSG-AREVHVPYNPKTYLQNFDDGSVMMV 87
           VLE +TA    RWR++WR++ +EKK++F C  S  +R +H  Y+P TY QNFD GS+   
Sbjct: 33  VLESSTALRRPRWRLLWRKIMREKKKIFDCSSSACSRRMHFSYDPYTYSQNFDQGSMW-- 92

Query: 88  GDDDPDAISRSFSARFAISSAILRRPPP 111
              DPD +SRSFSARFA+SS I  +  P
Sbjct: 93  --SDPDNMSRSFSARFAVSSRIFEKTHP 116

[Close]

BLAST of Carg04258-RA vs. TrEMBL
Match: tr|A0A061GBI6|A0A061GBI6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_028719 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-12
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 14  GYVERGY--YSAVTVAVLEKTTARWRVVWRRLKKEKKRMFRCGMSGAREVHVPYNPKTYL 73
           GY +  Y    ++ V V      RWR++WRRL +EKK++F C  S +  VHV Y+P TY 
Sbjct: 43  GYAKSQYDRMHSINVLVTRSKLPRWRMLWRRLMREKKKIFDC--SSSTRVHVSYDPYTYA 102

Query: 74  QNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRR 108
           QNFD G +      DPD +SRSFSARFA+ S +  +
Sbjct: 103 QNFDQGLM----SADPDDLSRSFSARFAVPSRVFEK 132

The following BLAST results are available for this feature:

BLAST of Carg04258-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KDO51221.1	3.2e-15	49.47	hypothetical protein CISIN_1g044132mg [Citrus sinensis]	[more]
GAY51209.1	4.1e-15	48.42	hypothetical protein CUMW_132530 [Citrus unshiu]	[more]
ESR40256.1	9.2e-15	48.42	hypothetical protein CICLE_v10026796mg [Citrus clementina]	[more]
XP_015867177.1	5.1e-13	48.48	uncharacterized protein LOC107404700 [Ziziphus jujuba]	[more]
OAY36770.1	5.1e-13	50.00	hypothetical protein MANES_11G047000 [Manihot esculenta]	[more]

BLAST of Carg04258-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg04258-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04258-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A067EJZ4\|A0A067EJZ4_CITSI	2.1e-15	49.47	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044132mg PE=4 SV=1	[more]
tr\|A0A2H5PFR9\|A0A2H5PFR9_CITUN	2.7e-15	48.42	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_132530 PE=4 SV=1	[more]
tr\|V4ST02\|V4ST02_9ROSI	6.1e-15	48.42	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026796mg PE=4 ...	[more]
tr\|A0A2C9UYG8\|A0A2C9UYG8_MANES	3.3e-13	50.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G047000 PE=4 SV=...	[more]
tr\|A0A061GBI6\|A0A061GBI6_THECC	2.2e-12	44.79	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_028719 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04258	Carg04258	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04258-RA.exon.1	Carg04258-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04258-RA.CDS.1	Carg04258-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04258-RA	Carg04258-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 30..106
None	No IPR available	PANTHER	PTHR33168:SF6	SUBFAMILY NOT NAMED	coord: 30..106