Cucsa.062090 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.062090
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00653 : 140593 .. 141196 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCAAACTCCCCTTCCTCCCTCCCCAACCCAAAACAATCAAACCCATAATGGATTTGAGTTGTATGCGGTGGTCCAGCAGCCGTGTGTATGTGGCAGCCGGCGTCTTGAGGTGCAGGGCGGCGCCGACGCCGGAGATGAAGAAGAAGATGATGATGGGGAGATGGAGAATGGTGTGGAGAAGGATTAAGAAGAGAATCATAATGTCATGGAGGTGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATCTACAGAATTTTGATGATGGGTTTACAATGATGATGATGATGGGAGCCACTGGTGAGGATTCTGACGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGCCCTTTGTCCTCTTAGCAGCTTTCTCTTTTCCTCTTTTTTCTTCTTACCAACTCTGTTGTGTTAGCTGCTCGTGAGGGCTAAAGCCAAGATTGTAAATAACTTTTTTCTATTCTCGAGAGGATGAGTATATCTCAACTGTGCTCGTAATTAATTAAAAACTGAGAGGTTGCTCGTAACCAATAAAATTGTTGAAAATATTTTTACCAAATATAGTGAAATTTTAAATTATATTATA

mRNA sequence

TCCAAACTCCCCTTCCTCCCTCCCCAACCCAAAACAATCAAACCCATAATGGATTTGAGTTGTATGCGGTGGTCCAGCAGCCGTGTGTATGTGGCAGCCGGCGTCTTGAGGTGCAGGGCGGCGCCGACGCCGGAGATGAAGAAGAAGATGATGATGGGGAGATGGAGAATGGTGTGGAGAAGGATTAAGAAGAGAATCATAATGTCATGGAGGTGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATCTACAGAATTTTGATGATGGGTTTACAATGATGATGATGATGGGAGCCACTGGTGAGGATTCTGACGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGCCCTTTGTCCTCTTAGCAGCTTTCTCTTTTCCTCTTTTTTCTTCTTACCAACTCTGTTGTGTTAGCTGCTCGTGAGGGCTAAAGCCAAGATTGTAAATAACTTTTTTCTATTCTCGAGAGGATGAGTATATCTCAACTGTGCTCGTAATTAATTAAAAACTGAGAGGTTGCTCGTAACCAATAAAATTGTTGAAAATATTTTTACCAAATATAGTGAAATTTTAAattatattata

Coding sequence (CDS)

ATGGATTTGAGTTGTATGCGGTGGTCCAGCAGCCGTGTGTATGTGGCAGCCGGCGTCTTGAGGTGCAGGGCGGCGCCGACGCCGGAGATGAAGAAGAAGATGATGATGGGGAGATGGAGAATGGTGTGGAGAAGGATTAAGAAGAGAATCATAATGTCATGGAGGTGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATCTACAGAATTTTGATGATGGGTTTACAATGATGATGATGATGGGAGCCACTGGTGAGGATTCTGACGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGCCCTTTGTCCTCTTAG

Protein sequence

MDLSCMRWSSSRVYVAAGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQNFDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS*
Homology
[Close]
BLAST of Cucsa.062090 vs. TrEMBL
Match: A0A0A0LAV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G481240 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-48
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 15  VAAGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN 74
           V+AGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN
Sbjct: 19  VSAGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN 78

Query: 75  FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 112
           FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS
Sbjct: 79  FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 115

[Close]
BLAST of Cucsa.062090 vs. NCBI nr
Match: gi|700202931|gb|KGN58064.1| (hypothetical protein Csa_3G481240 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 15  VAAGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN 74
           V+AGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN
Sbjct: 19  VSAGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN 78

Query: 75  FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 112
           FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS
Sbjct: 79  FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 115

The following BLAST results are available for this feature:
BLAST of Cucsa.062090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAV8_CUCSA1.6e-4898.97Uncharacterized protein OS=Cucumis sativus GN=Csa_3G481240 PE=4 SV=1[more]
BLAST of Cucsa.062090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202931|gb|KGN58064.1|2.3e-4898.97hypothetical protein Csa_3G481240 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.062090.1Cucsa.062090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 30..105
score: 7.1
NoneNo IPR availablePANTHERPTHR33168:SF6SUBFAMILY NOT NAMEDcoord: 30..105
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.062090Cla012677Watermelon (97103) v1cgywmB054
Cucsa.062090Csa3G481240Cucumber (Chinese Long) v2cgycuB048
Cucsa.062090MELO3C012962Melon (DHL92) v3.5.1cgymeB052
Cucsa.062090ClCG07G013070Watermelon (Charleston Gray)cgywcgB054
Cucsa.062090CSPI03G24160Wild cucumber (PI 183967)cgycpiB048
Cucsa.062090MELO3C012962.2Melon (DHL92) v3.6.1cgymedB051
Cucsa.062090CsaV3_3G025100Cucumber (Chinese Long) v3cgycucB050
Cucsa.062090Cla97C07G139870Watermelon (97103) v2cgywmbB052
Cucsa.062090Bhi01G002649Wax gourdcgywgoB054
Cucsa.062090Carg04258Silver-seed gourdcarcgyB0234
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.062090Silver-seed gourdcarcgyB0140
Cucsa.062090Silver-seed gourdcarcgyB0836
Cucsa.062090Cucumber (Chinese Long) v3cgycucB051
Cucsa.062090Watermelon (97103) v2cgywmbB053
Cucsa.062090Wax gourdcgywgoB055
Cucsa.062090Cucumber (Gy14) v1cgycgyB013
Cucsa.062090Cucurbita maxima (Rimu)cgycmaB0089
Cucsa.062090Cucurbita maxima (Rimu)cgycmaB0090
Cucsa.062090Cucurbita maxima (Rimu)cgycmaB0091
Cucsa.062090Cucurbita moschata (Rifu)cgycmoB0084
Cucsa.062090Cucurbita moschata (Rifu)cgycmoB0085
Cucsa.062090Cucurbita moschata (Rifu)cgycmoB0086
Cucsa.062090Wild cucumber (PI 183967)cgycpiB049
Cucsa.062090Cucumber (Chinese Long) v2cgycuB049
Cucsa.062090Watermelon (Charleston Gray)cgywcgB053
Cucsa.062090Watermelon (97103) v1cgywmB053
Cucsa.062090Cucurbita pepo (Zucchini)cgycpeB0085
Cucsa.062090Cucurbita pepo (Zucchini)cgycpeB0086
Cucsa.062090Bottle gourd (USVL1VR-Ls)cgylsiB052