CsaV3_3G025100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G025100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 22020016 .. 22021986 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAGCAAGAGACTTTCCTTGTAAGTTTTGTATAATTTCCTCTGCTTTATTTATTTAACATTAAAACAAATCTTATGAAATCTTCAAAAAGCTTTGGAACTCTTCCATTAGCCTTGTTTGTTTTATCATGTTTTGGCTGACCATCACCCAGAAACTAATGAATAGCCACCTACTTTGTCCCGTTTCAATTCTTCGGGTTGAAATGGTGCGATGAAGTAATATATTCTTTCGTGTATAAGTTTGATCTACTAATTACTATGATTGAAACATCATGATTTAGCAGCATAGACAATCACACTATAATCTTTTTAATGTGCATTAAACTGATTATAATTTTACATGTTTGGCACTGTGTTGTGGGCTAGTTTCAATAACCAAAAAAGGAGCCCTGGATCATTTAGAATGTAGACTATAATTGAGTGGTTGTGTAGGTAGTTAACATTATGTGGTTATTTGAAAAAGAAGAATTAAAAAATAAATAAAGATTTAAATACTACCGTATGATCCAATACTTTTAGTTTTAGAATTTTCTTTCAGTACAACCGGGGATAGAGGTGGGAATGAAATAGGATTATTAGGAATAAGAGAATGTTCCAGCTCGTAAACACAAGAAGTTAATATTAGGCTCTTCTAATCCAATATGGATATCCTCCAAACACCTCCTAAATGATTACTTTTTTTTTTTTTTTTTGTAAATATAAGGACAAGAATGCAAATATTAAAAGTATTGAGGACCAAATTATAAATATATATATATATATATATATATATATATATATATATATATATACACGTATATCTACGTATATCTCTAAATTTTTAAAGTTGTATCAATTAAAACCTTAGGATTACTTTAGGTTTAAATTATTGCGATTGTTTCAAATTAAAAGTTACTTATCCTTATCTATCCTTAGGTATATATTCCATAAATTTCTTCCACTCGAAAGAATATACCGTACCACTCGTCCCAATTTACCACATGACGACTACAAAATGAGTTAGATTGAGACGGTGTCAAAGGCAATCTAAGTAATGTAAAGTCTAATTAGTTGTTGATCACTAAAACATACTATAATATTATATTTGAGTTGAGATATATAGTTGTTTCAAACAATTATTATTGAAAAGAATAGAATTTATGATATTTTGACTAAAGAAAAGACAAAGCAAATGCAACCCATTAAACATCTCTCCCATGTGAGTTAGAAAAAGAGAACCCTCTTTTTAGGGTTACCACAAAAACAGAAACCCCTTTTGTGAATATAAAATAGAATAATGAGTATTGACCTTTCTCACTTTTTTTCACATTGAACATTGTTATTAATACCCCCAACTCCAAACTCCCCTTCCTCCCTCCCCAACCCAAAACAATCAAACCCATAATGGATTTGAGTTGTATGCGGTGGTCCAGCAGCCGTGTGTATGTGGCAGCCGGCGTCTTGAGGTGCAGGGCGGCGCCGACGCCGGAGATGAAGAAGAAGATGATGATGGGGAGATGGAGAATGGTGTGGAGAAGGATTAAGAAGAGAATCATAATGTCATGGAGGTGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATCTACAGAATTTTGATGATGGGTTTACAATGATGATGATGATGGGAGCCACTGGTGAGGATTCTGACGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGCCCTTTGTCCTCTTAGCAGCTTTCTCTTTTCCTCTTTTTTCTTCTTACCAACTCTGTTGTGTTAGCTGCTCGTGAGGGCTAAAGCCAAGATTGTAAATAACTTTTTTCTATTCTCGAGAGGATGAGTATATCTCAACTGTGCTCGTAATTAATTAAAAACTGAGAGGTTGCTCGTAACCAATAAAATTGTTGAAAATATTTTTACCAAATATAGTGAAATTTTAAATTATATTATATCTCTATTATATTTTATAATTATTTTGGTTAATT

mRNA sequence

ATGGATTTGAGTTGTATGCGGTGGTCCAGCAGCCGTGTGTATGTGGCAGCCGGCGTCTTGAGGTGCAGGGCGGCGCCGACGCCGGAGATGAAGAAGAAGATGATGATGGGGAGATGGAGAATGGTGTGGAGAAGGATTAAGAAGAGAATCATAATGTCATGGAGGTGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATCTACAGAATTTTGATGATGGGTTTACAATGATGATGATGATGGGAGCCACTGGTGAGGATTCTGACGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGCCCTTTGTCCTCTTAG

Coding sequence (CDS)

ATGGATTTGAGTTGTATGCGGTGGTCCAGCAGCCGTGTGTATGTGGCAGCCGGCGTCTTGAGGTGCAGGGCGGCGCCGACGCCGGAGATGAAGAAGAAGATGATGATGGGGAGATGGAGAATGGTGTGGAGAAGGATTAAGAAGAGAATCATAATGTCATGGAGGTGCAGAGCACATGAGATGCGGGTGCAGGGGTACGATCGAGAGAGTTATCTACAGAATTTTGATGATGGGTTTACAATGATGATGATGATGGGAGCCACTGGTGAGGATTCTGACGTCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTCTCGCCCTTTGTCCTCTTAG

Protein sequence

MDLSCMRWSSSRVYVAAGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQNFDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS
Homology
[Close]
BLAST of CsaV3_3G025100 vs. NCBI nr
Match: KGN58064.1 (hypothetical protein Csa_3G481240 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 8.6e-47
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 15  VAAGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN 74
           V+AGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN
Sbjct: 19  VSAGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN 78

Query: 75  FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 112
           FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS
Sbjct: 79  FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 115

[Close]
BLAST of CsaV3_3G025100 vs. NCBI nr
Match: KYP54211.1 (hypothetical protein KK1_000386 [Cajanus cajan])

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-04
Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 29  EMKKKMMMGRWRMVWRRIK--KRIIMSWRCRAHEMRVQGYDRESYLQNFDDGFTMMMMMG 88
           E   ++ MG W+ +WR+IK  +R   S     H   VQ YD  SYLQNFDDG++      
Sbjct: 34  EFVARLKMGSWKTLWRKIKRERRRFFSPSPVFHHFHVQ-YDPTSYLQNFDDGYS------ 93

Query: 89  ATGEDSDVISRSFSARFA 105
               D D +SRSFSARFA
Sbjct: 94  ---TDPDNVSRSFSARFA 101

[Close]
BLAST of CsaV3_3G025100 vs. NCBI nr
Match: XP_020228536.1 (uncharacterized protein LOC109809600 [Cajanus cajan])

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-04
Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 29  EMKKKMMMGRWRMVWRRIK--KRIIMSWRCRAHEMRVQGYDRESYLQNFDDGFTMMMMMG 88
           E   ++ MG W+ +WR+IK  +R   S     H   VQ YD  SYLQNFDDG++      
Sbjct: 58  EFVARLKMGSWKTLWRKIKRERRRFFSPSPVFHHFHVQ-YDPTSYLQNFDDGYS------ 117

Query: 89  ATGEDSDVISRSFSARFA 105
               D D +SRSFSARFA
Sbjct: 118 ---TDPDNVSRSFSARFA 125

[Close]
BLAST of CsaV3_3G025100 vs. TrEMBL
Match: tr|A0A0A0LAV8|A0A0A0LAV8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G481240 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 5.7e-47
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 15  VAAGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN 74
           V+AGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN
Sbjct: 19  VSAGVLRCRAAPTPEMKKKMMMGRWRMVWRRIKKRIIMSWRCRAHEMRVQGYDRESYLQN 78

Query: 75  FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 112
           FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS
Sbjct: 79  FDDGFTMMMMMGATGEDSDVISRSFSARFAISRPLSS 115

[Close]
BLAST of CsaV3_3G025100 vs. TrEMBL
Match: tr|A0A151SHL2|A0A151SHL2_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_000386 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 29  EMKKKMMMGRWRMVWRRIK--KRIIMSWRCRAHEMRVQGYDRESYLQNFDDGFTMMMMMG 88
           E   ++ MG W+ +WR+IK  +R   S     H   VQ YD  SYLQNFDDG++      
Sbjct: 34  EFVARLKMGSWKTLWRKIKRERRRFFSPSPVFHHFHVQ-YDPTSYLQNFDDGYS------ 93

Query: 89  ATGEDSDVISRSFSARFA 105
               D D +SRSFSARFA
Sbjct: 94  ---TDPDNVSRSFSARFA 101

The following BLAST results are available for this feature:
BLAST of CsaV3_3G025100 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58064.18.6e-4798.97hypothetical protein Csa_3G481240 [Cucumis sativus][more]
KYP54211.15.3e-0444.87hypothetical protein KK1_000386 [Cajanus cajan][more]
XP_020228536.15.3e-0444.87uncharacterized protein LOC109809600 [Cajanus cajan][more]
BLAST of CsaV3_3G025100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G025100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G025100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAV8|A0A0A0LAV8_CUCSA5.7e-4798.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G481240 PE=4 SV=1[more]
tr|A0A151SHL2|A0A151SHL2_CAJCA3.5e-0444.87Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_000386 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G025100.1CsaV3_3G025100.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168:SF6SUBFAMILY NOT NAMEDcoord: 29..106
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 29..106

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G025100CSPI03G24160Wild cucumber (PI 183967)cpicucB154
CsaV3_3G025100Cucsa.062090Cucumber (Gy14) v1cgycucB050
CsaV3_3G025100CmoCh01G001190Cucurbita moschata (Rifu)cmocucB0524
CsaV3_3G025100Cp4.1LG02g14690Cucurbita pepo (Zucchini)cpecucB0696
CsaV3_3G025100CsGy3G023100Cucumber (Gy14) v2cgybcucB117
CsaV3_3G025100Carg04258Silver-seed gourdcarcucB0227
CsaV3_3G025100Cla012677Watermelon (97103) v1cucwmB226
CsaV3_3G025100MELO3C012962Melon (DHL92) v3.5.1cucmeB220
CsaV3_3G025100ClCG07G013070Watermelon (Charleston Gray)cucwcgB263
CsaV3_3G025100MELO3C012962.2Melon (DHL92) v3.6.1cucmedB213
CsaV3_3G025100Cla97C07G139870Watermelon (97103) v2cucwmbB243
CsaV3_3G025100Bhi01G002649Wax gourdcucwgoB275
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G025100Cucumber (Chinese Long) v3cuccucB162
CsaV3_3G025100Silver-seed gourdcarcucB0135
CsaV3_3G025100Silver-seed gourdcarcucB0780
CsaV3_3G025100Silver-seed gourdcarcucB1072
CsaV3_3G025100Cucumber (Gy14) v2cgybcucB334
CsaV3_3G025100Cucumber (Gy14) v1cgycucB548
CsaV3_3G025100Cucurbita maxima (Rimu)cmacucB0284
CsaV3_3G025100Cucurbita maxima (Rimu)cmacucB0427
CsaV3_3G025100Cucurbita maxima (Rimu)cmacucB0540
CsaV3_3G025100Cucurbita maxima (Rimu)cmacucB1059
CsaV3_3G025100Cucurbita moschata (Rifu)cmocucB0275
CsaV3_3G025100Cucurbita moschata (Rifu)cmocucB0422
CsaV3_3G025100Cucurbita moschata (Rifu)cmocucB1042
CsaV3_3G025100Cucurbita pepo (Zucchini)cpecucB0156
CsaV3_3G025100Cucurbita pepo (Zucchini)cpecucB0382
CsaV3_3G025100Cucurbita pepo (Zucchini)cpecucB0752
CsaV3_3G025100Wild cucumber (PI 183967)cpicucB144
CsaV3_3G025100Wild cucumber (PI 183967)cpicucB399
CsaV3_3G025100Bottle gourd (USVL1VR-Ls)cuclsiB198
CsaV3_3G025100Bottle gourd (USVL1VR-Ls)cuclsiB255
CsaV3_3G025100Melon (DHL92) v3.5.1cucmeB191
CsaV3_3G025100Melon (DHL92) v3.6.1cucmedB182
CsaV3_3G025100Watermelon (Charleston Gray)cucwcgB186
CsaV3_3G025100Watermelon (97103) v1cucwmB198
CsaV3_3G025100Watermelon (97103) v2cucwmbB258