MELO3C012741 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012741
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	LOB domain-containing protein, putative
Location	chr1 : 22775782 .. 22776550 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCTCTTCTTCTTCTTCCTCTTCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGAGCCTCTCACTTCTCTGCCATCCACAAAGTTTTTGGTGCGAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCTGTGACGATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTTTCTAATAATAAAATTTACCATAACTCATATCCGACTTAAAGTTAGATCATTCGATGATAATAGACTTTATCATAATTTTCAAAGAAAAATAAATCGATCATACTTATTCGATCTCCTCAGCTTATTCTTTTGAGGTTGTGTTCGTTTATTCAAAACCCTAATTTTCGAAAACGAGTTTGATGACTGTTTGAATGGTTGGGTAAATTGTAGGTCATGAATCTAAGGGCTCAAGTGGCTTGTTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACTCTACTGAATTACCTTATGAAAAATCTCCATTTTATTATTCCGATGACCCATTTTTAGATCTTCAAAGCTGGCTTCTGACGGAGAGCTGCACTGCCGCCGCACCGGAGTTTGAACCCGCGGCGGTTCCGTACTTCGAGATGAGTGTCATCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

mRNA sequence

ATGGCAGCCTCTTCTTCTTCTTCCTCTTCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGAGCCTCTCACTTCTCTGCCATCCACAAAGTTTTTGGTGCGAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCTGTGACGATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTCATGAATCTAAGGGCTCAAGTGGCTTGTTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACTCTACTGAATTACCTTATGAAAAATCTCCATTTTATTATTCCGATGACCCATTTTTAGATCTTCAAAGCTGGCTTCTGACGGAGAGCTGCACTGCCGCCGCACCGGAGTTTGAACCCGCGGCGGTTCCGTACTTCGAGATGAGTGTCATCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

Coding sequence (CDS)

ATGGCAGCCTCTTCTTCTTCTTCCTCTTCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGAGCCTCTCACTTCTCTGCCATCCACAAAGTTTTTGGTGCGAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCTGTGACGATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTCATGAATCTAAGGGCTCAAGTGGCTTGTTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACTCTACTGAATTACCTTATGAAAAATCTCCATTTTATTATTCCGATGACCCATTTTTAGATCTTCAAAGCTGGCTTCTGACGGAGAGCTGCACTGCCGCCGCACCGGAGTTTGAACCCGCGGCGGTTCCGTACTTCGAGATGAGTGTCATCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

Protein sequence

MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAGDFCC*

Homology

[Close]

BLAST of MELO3C012741 vs. Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.2e-50
Identity = 101/159 (63.52%), Postives = 122/159 (76.73%), Query Frame = 1


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M +SSSSS SPCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQ--ILLN 120
           P+S RCEAA+TISYEAQARLQDPIYGCVSHI ALQQQV+NL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 NYTTRN-------STELPY---EKSPFYYSDDPFLDLQS 148
           + T+ N       +T+ PY    ++ +++ D   L  Q+
Sbjct: 121 SPTSENPNSYYGDTTKAPYHHDHQNIYHHHDQTHLVYQT 159

[Close]

BLAST of MELO3C012741 vs. Swiss-Prot
Match: LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-43
Identity = 85/134 (63.43%), Postives = 102/134 (76.12%), Query Frame = 1


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNS 125
            EAA TI YEAQAR QDPIYGCVSHI +LQQQV+NL+ Q+  L++QA Q ++       +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM-------A 121

Query: 126 TELPYEKSPFYYSD 140
            + P  ++P YY D
Sbjct: 122 IDSPSIENPNYYQD 128

[Close]

BLAST of MELO3C012741 vs. Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 7.3e-39
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 1


Query: 3   ASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62
           +S      PCGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTT 122
             R +A VTI YEAQAR++DPIYGCV+HI ALQQQV+NL+A+V+ L+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 123 RNSTELPYEKSPFYYSDDP 142
           R    +P +  P +++  P
Sbjct: 149 R-PQPMP-QPQPLFFTPPP 165

[Close]

BLAST of MELO3C012741 vs. Swiss-Prot
Match: LBD14_ARATH (LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-37
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 1


Query: 10  SPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAA 69
           SPCG CKFLRRKCV GC+FAPYF +E G+S+F+AIHKVFGASN SKL++HLP   RC+A 
Sbjct: 6   SPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAV 65

Query: 70  VTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQ 115
            TISYEA +RL DPIYGCVS I +LQQQV++L+AQV  LRE+A++
Sbjct: 66  RTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of MELO3C012741 vs. Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-37
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 4   SSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVS 63
           +++ + SPCGACKFLRRKC + CIFAPYF  E GA+ F+AIHKVFGASN SKLL ++P+ 
Sbjct: 8   TTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIH 67

Query: 64  HRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAA 114
            RCEA VTI+YEAQARL DP+YGCVSHI ALQQQV  L++QV  ++ Q A
Sbjct: 68  DRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]

BLAST of MELO3C012741 vs. TrEMBL
Match: A0A0A0K5D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G373460 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.5e-94
Identity = 173/184 (94.02%), Postives = 176/184 (95.65%), Query Frame = 1


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS+ PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180
           TTRN TEL YEKSPF YSDDPFLDLQSWLL ESC+A APE EPAAVPYFEMSV+DSKLAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of MELO3C012741 vs. TrEMBL
Match: B9T847_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0245570 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52
Identity = 113/177 (63.84%), Postives = 129/177 (72.88%), Query Frame = 1


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNS 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNL+AQ+A L+EQAAQ L+N   T N 
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLQAQLASLKEQAAQTLINGSATANP 121

Query: 126 TELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAGDF 183
            +  Y K     S  P  DLQSW  +E+ +   P+F P+     E   +D    G +
Sbjct: 122 NDKYYGKP----SSLP-QDLQSWFQSEN-SNTIPQFNPSFTTAGENGFLDPYSMGSY 172

[Close]

BLAST of MELO3C012741 vs. TrEMBL
Match: A0A068U5B4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016197001 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.0e-52
Identity = 113/185 (61.08%), Postives = 130/185 (70.27%), Query Frame = 1


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY--TTR 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQV+NL+AQ+A LREQAAQ L N Y  T  
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAFLREQAAQCLANGYSNTAA 121

Query: 126 NSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVP------YFEMSVIDSK 183
           N  E+  E     YS     D+QSW   E+ +   P F+   VP      +F+  ++   
Sbjct: 122 NPNEIKSEGKCLSYSP----DVQSWFQPEN-SGTIPHFDSNFVPKNGEMSHFQRGIMSQT 181

[Close]

BLAST of MELO3C012741 vs. TrEMBL
Match: V7BIU3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G195000g PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 9.0e-52
Identity = 109/158 (68.99%), Postives = 121/158 (76.58%), Query Frame = 1


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNS 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQV+NL+AQ+A L+EQAAQ  LN     N 
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNGSVNENP 121

Query: 126 TELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEP 164
           +E  +EKS          DLQSW   E+ +   PEF P
Sbjct: 122 SEKLFEKSSAALPQ----DLQSWFQVEN-SNLGPEFLP 154

[Close]

BLAST of MELO3C012741 vs. TrEMBL
Match: A0A067JUP3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17716 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-51
Identity = 109/183 (59.56%), Postives = 126/183 (68.85%), Query Frame = 1


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNS 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQVM L+AQ+ACL+EQAAQ +LN   T N 
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMTLQAQLACLKEQAAQTVLNGSATANP 121

Query: 126 TELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPE------FEPAAVPYFEMSVIDSKLA 183
                             DLQSW  +E+ +   P+      F  +   Y E  ++D    
Sbjct: 122 NNAQ--------------DLQSWFQSENSSNMLPQLINPSSFNGSTTQYCENGLVDPFSM 170

[Close]

BLAST of MELO3C012741 vs. TAIR10
Match: AT3G58190.1 (AT3G58190.1 lateral organ boundaries-domain 29)

HSP 1 Score: 198.0 bits (502), Expect = 5.2e-51
Identity = 101/159 (63.52%), Postives = 122/159 (76.73%), Query Frame = 1


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M +SSSSS SPCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQ--ILLN 120
           P+S RCEAA+TISYEAQARLQDPIYGCVSHI ALQQQV+NL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 NYTTRN-------STELPY---EKSPFYYSDDPFLDLQS 148
           + T+ N       +T+ PY    ++ +++ D   L  Q+
Sbjct: 121 SPTSENPNSYYGDTTKAPYHHDHQNIYHHHDQTHLVYQT 159

[Close]

BLAST of MELO3C012741 vs. TAIR10
Match: AT2G42440.1 (AT2G42440.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-44
Identity = 85/134 (63.43%), Postives = 102/134 (76.12%), Query Frame = 1


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNS 125
            EAA TI YEAQAR QDPIYGCVSHI +LQQQV+NL+ Q+  L++QA Q ++       +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM-------A 121

Query: 126 TELPYEKSPFYYSD 140
            + P  ++P YY D
Sbjct: 122 IDSPSIENPNYYQD 128

[Close]

BLAST of MELO3C012741 vs. TAIR10
Match: AT2G45420.1 (AT2G45420.1 LOB domain-containing protein 18)

HSP 1 Score: 161.8 bits (408), Expect = 4.1e-40
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 1


Query: 3   ASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62
           +S      PCGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTT 122
             R +A VTI YEAQAR++DPIYGCV+HI ALQQQV+NL+A+V+ L+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 123 RNSTELPYEKSPFYYSDDP 142
           R    +P +  P +++  P
Sbjct: 149 R-PQPMP-QPQPLFFTPPP 165

[Close]

BLAST of MELO3C012741 vs. TAIR10
Match: AT2G31310.1 (AT2G31310.1 LOB domain-containing protein 14)

HSP 1 Score: 157.5 bits (397), Expect = 7.8e-39
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 1


Query: 10  SPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAA 69
           SPCG CKFLRRKCV GC+FAPYF +E G+S+F+AIHKVFGASN SKL++HLP   RC+A 
Sbjct: 6   SPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAV 65

Query: 70  VTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQ 115
            TISYEA +RL DPIYGCVS I +LQQQV++L+AQV  LRE+A++
Sbjct: 66  RTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of MELO3C012741 vs. TAIR10
Match: AT2G42430.1 (AT2G42430.1 lateral organ boundaries-domain 16)

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-38
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 4   SSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVS 63
           +++ + SPCGACKFLRRKC + CIFAPYF  E GA+ F+AIHKVFGASN SKLL ++P+ 
Sbjct: 8   TTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIH 67

Query: 64  HRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAA 114
            RCEA VTI+YEAQARL DP+YGCVSHI ALQQQV  L++QV  ++ Q A
Sbjct: 68  DRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]

BLAST of MELO3C012741 vs. NCBI nr
Match: gi|659092842|ref|XP_008447245.1| (PREDICTED: LOB domain-containing protein 29 [Cucumis melo])

HSP 1 Score: 377.9 bits (969), Expect = 1.0e-101
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180
           TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG
Sbjct: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of MELO3C012741 vs. NCBI nr
Match: gi|449465252|ref|XP_004150342.1| (PREDICTED: LOB domain-containing protein 29 [Cucumis sativus])

HSP 1 Score: 353.6 bits (906), Expect = 2.1e-94
Identity = 173/184 (94.02%), Postives = 176/184 (95.65%), Query Frame = 1


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS+ PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180
           TTRN TEL YEKSPF YSDDPFLDLQSWLL ESC+A APE EPAAVPYFEMSV+DSKLAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of MELO3C012741 vs. NCBI nr
Match: gi|255587844|ref|XP_002534416.1| (PREDICTED: LOB domain-containing protein 29 [Ricinus communis])

HSP 1 Score: 214.5 bits (545), Expect = 1.5e-52
Identity = 113/177 (63.84%), Postives = 129/177 (72.88%), Query Frame = 1


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNS 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNL+AQ+A L+EQAAQ L+N   T N 
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLQAQLASLKEQAAQTLINGSATANP 121

Query: 126 TELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAGDF 183
            +  Y K     S  P  DLQSW  +E+ +   P+F P+     E   +D    G +
Sbjct: 122 NDKYYGKP----SSLP-QDLQSWFQSEN-SNTIPQFNPSFTTAGENGFLDPYSMGSY 172

[Close]

BLAST of MELO3C012741 vs. NCBI nr
Match: gi|661892567|emb|CDP03725.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 212.6 bits (540), Expect = 5.8e-52
Identity = 113/185 (61.08%), Postives = 130/185 (70.27%), Query Frame = 1


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY--TTR 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQV+NL+AQ+A LREQAAQ L N Y  T  
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAFLREQAAQCLANGYSNTAA 121

Query: 126 NSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVP------YFEMSVIDSK 183
           N  E+  E     YS     D+QSW   E+ +   P F+   VP      +F+  ++   
Sbjct: 122 NPNEIKSEGKCLSYSP----DVQSWFQPEN-SGTIPHFDSNFVPKNGEMSHFQRGIMSQT 181

[Close]

BLAST of MELO3C012741 vs. NCBI nr
Match: gi|951023437|ref|XP_014513182.1| (PREDICTED: LOB domain-containing protein 29-like [Vigna radiata var. radiata])

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-51
Identity = 110/158 (69.62%), Postives = 123/158 (77.85%), Query Frame = 1


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPV+ R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNS 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQV+NL+AQ+A L+EQAAQ  LN   T N 
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNASVTENP 121

Query: 126 TELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEP 164
           +E  +EKS    S     DLQSW   E+ +   PEF P
Sbjct: 122 SEKLFEKS----SASIPQDLQSWFQVEN-SNLGPEFLP 154

The following BLAST results are available for this feature:

BLAST of MELO3C012741 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD29_ARATH	9.2e-50	63.52	LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1	[more]
LBD17_ARATH	3.7e-43	63.43	LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1	[more]
LBD18_ARATH	7.3e-39	56.83	LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2	[more]
LBD14_ARATH	1.4e-37	69.52	LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1	[more]
LBD16_ARATH	2.4e-37	66.36	LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1	[more]

BLAST of MELO3C012741 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5D4_CUCSA	1.5e-94	94.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G373460 PE=4 SV=1	[more]
B9T847_RICCO	1.1e-52	63.84	LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0245570 PE=4...	[more]
A0A068U5B4_COFCA	4.0e-52	61.08	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016197001 PE=4 SV=1	[more]
V7BIU3_PHAVU	9.0e-52	68.99	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G195000g PE=4 SV=1	[more]
A0A067JUP3_JATCU	1.2e-51	59.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17716 PE=4 SV=1	[more]

BLAST of MELO3C012741 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58190.1	5.2e-51	63.52	lateral organ boundaries-domain 29	[more]
AT2G42440.1	2.1e-44	63.43	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45420.1	4.1e-40	56.83	LOB domain-containing protein 18	[more]
AT2G31310.1	7.8e-39	69.52	LOB domain-containing protein 14	[more]
AT2G42430.1	1.3e-38	66.36	lateral organ boundaries-domain 16	[more]

BLAST of MELO3C012741 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092842\|ref\|XP_008447245.1\|	1.0e-101	100.00	PREDICTED: LOB domain-containing protein 29 [Cucumis melo]	[more]
gi\|449465252\|ref\|XP_004150342.1\|	2.1e-94	94.02	PREDICTED: LOB domain-containing protein 29 [Cucumis sativus]	[more]
gi\|255587844\|ref\|XP_002534416.1\|	1.5e-52	63.84	PREDICTED: LOB domain-containing protein 29 [Ricinus communis]	[more]
gi\|661892567\|emb\|CDP03725.1\|	5.8e-52	61.08	unnamed protein product [Coffea canephora]	[more]
gi\|951023437\|ref\|XP_014513182.1\|	1.3e-51	69.62	PREDICTED: LOB domain-containing protein 29-like [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012741T1	MELO3C012741T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 11..109 score: 3.6
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 10..112 score: 21
None	No IPR available	unknown	Coil	Coil	coord: 91..118 scor
None	No IPR available	PANTHER	PTHR31529	FAMILY NOT NAMED	coord: 1..128 score: 4.8
None	No IPR available	PANTHER	PTHR31529:SF2	LOB DOMAIN-CONTAINING PROTEIN 17-RELATED	coord: 1..128 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012741	Csa7G373460	Cucumber (Chinese Long) v2	cumeB527
MELO3C012741	Cla014860	Watermelon (97103) v1	mewmB210
MELO3C012741	ClCG09G008070	Watermelon (Charleston Gray)	mewcgB184
MELO3C012741	Cla97C09G170730	Watermelon (97103) v2	mewmbB231
MELO3C012741	Bhi09G001007	Wax gourd	mewgoB261
MELO3C012741	CSPI07G15230	Wild cucumber (PI 183967)	cpimeB531
MELO3C012741	Cucsa.388160	Cucumber (Gy14) v1	cgymeB638
MELO3C012741	CmaCh08G002710	Cucurbita maxima (Rimu)	cmameB828
MELO3C012741	CmoCh08G002690	Cucurbita moschata (Rifu)	cmomeB812
MELO3C012741	Lsi02G021740	Bottle gourd (USVL1VR-Ls)	lsimeB190
MELO3C012741	CsGy7G013680	Cucumber (Gy14) v2	cgybmeB462
MELO3C012741	Carg05095	Silver-seed gourd	carmeB0085
MELO3C012741	CsaV3_7G027000	Cucumber (Chinese Long) v3	cucmeB542

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012741	Silver-seed gourd	carmeB0013
MELO3C012741	Cucurbita maxima (Rimu)	cmameB325