CsaV3_7G027000 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G027000
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	LOB domain-containing protein 29
Location	chr7 : 16618861 .. 16619719 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGATGGCAGCCTCTTCTTCTTCTTCTACTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTTTTTAATAATAAAATTTACCATATAAACGAACTCATATCATCCAACTTCAAGTTTTAGATTCCATGATAATAAACTTTATCATAATTTTTAAAGAAAAGCAAAACGATCATACTTATTTGATCTCCTCACCTTAAACTTTTGAGTTTATGTTAATTTATTCGAAACCCTAATTTTCGAAATCGAGTTTGATGAGTATTTGAATGGGTGTGGAAATTGTAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCTGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAAGGATTATTGTGGATCGTGCGATCTCTTCCCCCCTCGTTTTCATATCAACGGCAAATAATAATTCGAAGTATGGGTGT

mRNA sequence

ATGGCAGCCTCTTCTTCTTCTTCTACTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCTGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

Coding sequence (CDS)

ATGGCAGCCTCTTCTTCTTCTTCTACTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCTGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

Protein sequence

MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDFCC

Homology

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BLAST of CsaV3_7G027000 vs. NCBI nr
Match: XP_004150342.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical protein Csa_7G373460 [Cucumis sativus])

HSP 1 Score: 374.8 bits (961), Expect = 1.7e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CsaV3_7G027000 vs. NCBI nr
Match: XP_008447245.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis melo])

HSP 1 Score: 350.1 bits (897), Expect = 4.5e-93
Identity = 173/184 (94.02%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS+ PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRN TEL YEKSPF YSDDPFLDLQSWLL ESC+A APE EPAAVPYFEMSV+DSKLAG
Sbjct: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CsaV3_7G027000 vs. NCBI nr
Match: XP_022156602.1 (LOB domain-containing protein 29-like [Momordica charantia])

HSP 1 Score: 286.2 bits (731), Expect = 8.0e-74
Identity = 143/184 (77.72%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAAS+SSS+ PCGACKFLRRKCVNGCIFAPYFRHELG SHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASASSSSSPCGACKFLRRKCVNGCIFAPYFRHELGTSHFSAVHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAA+TISYEAQARLQDPIYGCVSHI  LQQQV+N            AQILLNNY
Sbjct: 61  PVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNXXXXXXXXXXXXAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           T RNP ELLY KSPF  S DP  DLQSWLLAE  SA APE EPAAVP+ EMS+ D  +AG
Sbjct: 121 TIRNPNELLYGKSPF--SGDPLQDLQSWLLAEDRSAAAPEFEPAAVPFVEMSLADPNVAG 180

Query: 181 DFCC 185
           D CC
Sbjct: 181 DCCC 182

[Close]

BLAST of CsaV3_7G027000 vs. NCBI nr
Match: XP_023515354.1 (LOB domain-containing protein 29-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.2 bits (679), Expect = 8.6e-68
Identity = 134/184 (72.83%), Postives = 142/184 (77.17%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS+PPCGACKFLRRKCVNGCIFAPYF H+LGASHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFPHDLGASHFSAVHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHR  AAVTISYEAQARLQDPIYGC+S I ALQ                 AQI+LN Y
Sbjct: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
            TRNP ELLY  S   YSD+  LDLQ+WLL ESCS  APE EP A PY +M V DS LAG
Sbjct: 121 ITRNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 183

[Close]

BLAST of CsaV3_7G027000 vs. NCBI nr
Match: XP_022959894.1 (LOB domain-containing protein 29-like [Cucurbita moschata])

HSP 1 Score: 264.2 bits (674), Expect = 3.3e-67
Identity = 132/182 (72.53%), Postives = 141/182 (77.47%), Query Frame = 0


Query: 3   ASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62
           A+SSSS+PPCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHLPV
Sbjct: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61

Query: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTT 122
           SHR  AAVTISYEAQARLQDPIYGC+S I ALQ                 AQI+LN Y T
Sbjct: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYIT 121

Query: 123 RNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDF 182
           RNP ELLY  S   YSD+  LDLQ+WLL ESCS  APE EP A PY +M V DS LAGDF
Sbjct: 122 RNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 181

Query: 183 CC 185
           CC
Sbjct: 182 CC 182

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BLAST of CsaV3_7G027000 vs. TAIR10
Match: AT3G58190.1 (lateral organ boundaries-domain 29)

HSP 1 Score: 192.2 bits (487), Expect = 2.8e-49
Identity = 95/127 (74.80%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M +SSSSS  PCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ--ILLN 120
           P+S RCEAA+TISYEAQARLQDPIYGCVSHI ALQQQV+NL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 NYTTRNP 126
           + T+ NP
Sbjct: 121 SPTSENP 127

[Close]

BLAST of CsaV3_7G027000 vs. TAIR10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-41
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 6   SSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILL 118
            EAA TI YEAQAR QDPIYGCVSHI +LQQQV+NL+ Q+  L++QA Q ++
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of CsaV3_7G027000 vs. TAIR10
Match: AT2G45420.1 (LOB domain-containing protein 18)

HSP 1 Score: 154.8 bits (390), Expect = 5.0e-38
Identity = 72/104 (69.23%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 12  CGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVT 71
           CGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV  R +A VT
Sbjct: 38  CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query: 72  ISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQI 116
           I YEAQAR++DPIYGCV+HI ALQQQV+NL+A+V+YL+   A +
Sbjct: 98  ICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]

BLAST of CsaV3_7G027000 vs. TAIR10
Match: AT4G00210.1 (LOB domain-containing protein 31)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-36
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M+ S++    PCGACKFLRRKCV  C+FAPYF    G SHF+A+HKVFGASNASKLL  +
Sbjct: 1   MSGSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMI 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQI 116
           P S R +A VT++YEA ARL+DP+YGCV HI ALQ QVMNL+A++AY++ Q + +
Sbjct: 61  PASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTL 115

[Close]

BLAST of CsaV3_7G027000 vs. TAIR10
Match: AT3G03760.1 (LOB domain-containing protein 20)

HSP 1 Score: 149.1 bits (375), Expect = 2.8e-36
Identity = 70/110 (63.64%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 2   AASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61
           A + + +  PCGACKFLRRKCV+GCIFAP+F  + GA+ F+A+HKVFGASN SKLL H+P
Sbjct: 42  ATTGTGTASPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIP 101

Query: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQ 112
           V+ R +A VTISYEAQARL DP+YGCVS I+ALQQQV +L+A+++ ++ Q
Sbjct: 102 VNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQ 151

[Close]

BLAST of CsaV3_7G027000 vs. Swiss-Prot
Match: sp|Q9M2J7|LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.1e-48
Identity = 95/127 (74.80%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M +SSSSS  PCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ--ILLN 120
           P+S RCEAA+TISYEAQARLQDPIYGCVSHI ALQQQV+NL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 NYTTRNP 126
           + T+ NP
Sbjct: 121 SPTSENP 127

[Close]

BLAST of CsaV3_7G027000 vs. Swiss-Prot
Match: sp|Q5UG13|LBD_ORYSJ (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.4e-42
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 11  PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAV 70
           PCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLP++ R EAAV
Sbjct: 7   PCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAV 66

Query: 71  TISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ 115
           TISYEAQARL+DPIYGCV+HI ALQQQVM L+AQ+A L+  AAQ
Sbjct: 67  TISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]

BLAST of CsaV3_7G027000 vs. Swiss-Prot
Match: sp|Q9SLB6|LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.1e-40
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 6   SSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILL 118
            EAA TI YEAQAR QDPIYGCVSHI +LQQQV+NL+ Q+  L++QA Q ++
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of CsaV3_7G027000 vs. Swiss-Prot
Match: sp|O22131|LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 9.1e-37
Identity = 72/104 (69.23%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 12  CGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVT 71
           CGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV  R +A VT
Sbjct: 38  CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query: 72  ISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQI 116
           I YEAQAR++DPIYGCV+HI ALQQQV+NL+A+V+YL+   A +
Sbjct: 98  ICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]

BLAST of CsaV3_7G027000 vs. Swiss-Prot
Match: sp|O81322|LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-35
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M+ S++    PCGACKFLRRKCV  C+FAPYF    G SHF+A+HKVFGASNASKLL  +
Sbjct: 1   MSGSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMI 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQI 116
           P S R +A VT++YEA ARL+DP+YGCV HI ALQ QVMNL+A++AY++ Q + +
Sbjct: 61  PASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTL 115

[Close]

BLAST of CsaV3_7G027000 vs. TrEMBL
Match: tr|A0A0A0K5D4|A0A0A0K5D4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.1e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CsaV3_7G027000 vs. TrEMBL
Match: tr|A0A1S3BGZ5|A0A1S3BGZ5_CUCME (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 3.0e-93
Identity = 173/184 (94.02%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS+ PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRN TEL YEKSPF YSDDPFLDLQSWLL ESC+A APE EPAAVPYFEMSV+DSKLAG
Sbjct: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CsaV3_7G027000 vs. TrEMBL
Match: tr|V7BIU3|V7BIU3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G195000g PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.6e-52
Identity = 111/158 (70.25%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 6   SSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNP 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQV+NL+AQ+AYL+EQAAQ  LN     NP
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNGSVNENP 121

Query: 126 TELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEP 164
           +E L+EKS          DLQSW   E+ S   PE  P
Sbjct: 122 SEKLFEKSSAALPQ----DLQSWFQVEN-SNLGPEFLP 154

[Close]

BLAST of CsaV3_7G027000 vs. TrEMBL
Match: tr|A0A1S3V4R6|A0A1S3V4R6_VIGRR (LOB domain-containing protein 29-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106771691 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.3e-52
Identity = 111/158 (70.25%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 6   SSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPV+ R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNP 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQV+NL+AQ+AYL+EQAAQ  LN   T NP
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNASVTENP 121

Query: 126 TELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEP 164
           +E L+EKS          DLQSW   E+ S   PE  P
Sbjct: 122 SEKLFEKSSASIPQ----DLQSWFQVEN-SNLGPEFLP 154

[Close]

BLAST of CsaV3_7G027000 vs. TrEMBL
Match: tr|B9T847|B9T847_RICCO (LOB domain-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0245570 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.4e-52
Identity = 114/177 (64.41%), Postives = 129/177 (72.88%), Query Frame = 0


Query: 6   SSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNP 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNL+AQ+A L+EQAAQ L+N   T NP
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLQAQLASLKEQAAQTLINGSATANP 121

Query: 126 TELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDF 183
            +  Y K     S  P  DLQSW  +E+ S T P+  P+     E   +D    G +
Sbjct: 122 NDKYYGKP----SSLP-QDLQSWFQSEN-SNTIPQFNPSFTTAGENGFLDPYSMGSY 172

The following BLAST results are available for this feature:

BLAST of CsaV3_7G027000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150342.1	1.7e-100	100.00	PREDICTED: LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypoth...	[more]
XP_008447245.1	4.5e-93	94.02	PREDICTED: LOB domain-containing protein 29 [Cucumis melo]	[more]
XP_022156602.1	8.0e-74	77.72	LOB domain-containing protein 29-like [Momordica charantia]	[more]
XP_023515354.1	8.6e-68	72.83	LOB domain-containing protein 29-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959894.1	3.3e-67	72.53	LOB domain-containing protein 29-like [Cucurbita moschata]	[more]

BLAST of CsaV3_7G027000 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58190.1	2.8e-49	74.80	lateral organ boundaries-domain 29	[more]
AT2G42440.1	2.9e-41	70.54	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45420.1	5.0e-38	69.23	LOB domain-containing protein 18	[more]
AT4G00210.1	1.2e-36	61.74	LOB domain-containing protein 31	[more]
AT3G03760.1	2.8e-36	63.64	LOB domain-containing protein 20	[more]

BLAST of CsaV3_7G027000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M2J7\|LBD29_ARATH	5.1e-48	74.80	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
sp\|Q5UG13\|LBD_ORYSJ	9.4e-42	79.81	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
sp\|Q9SLB6\|LBD17_ARATH	5.1e-40	70.54	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
sp\|O22131\|LBD18_ARATH	9.1e-37	69.23	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
sp\|O81322\|LBD31_ARATH	2.2e-35	61.74	LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 S...	[more]

BLAST of CsaV3_7G027000 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5D4\|A0A0A0K5D4_CUCSA	1.1e-100	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=4 SV=1	[more]
tr\|A0A1S3BGZ5\|A0A1S3BGZ5_CUCME	3.0e-93	94.02	LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=4 SV...	[more]
tr\|V7BIU3\|V7BIU3_PHAVU	2.6e-52	70.25	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G195000g PE=4 ...	[more]
tr\|A0A1S3V4R6\|A0A1S3V4R6_VIGRR	3.3e-52	70.25	LOB domain-containing protein 29-like OS=Vigna radiata var. radiata OX=3916 GN=L...	[more]
tr\|B9T847\|B9T847_RICCO	4.4e-52	64.41	LOB domain-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0245...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G027000.1	CsaV3_7G027000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..111
None	No IPR available	PANTHER	PTHR31529	FAMILY NOT NAMED	coord: 8..165
None	No IPR available	PANTHER	PTHR31529:SF2	SUBFAMILY NOT NAMED	coord: 8..165
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 11..108 e-value: 6.8E-35 score: 119.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 10..112 score: 21.478

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G027000	CSPI07G15230	Wild cucumber (PI 183967)	cpicucB414
CsaV3_7G027000	Cucsa.388160	Cucumber (Gy14) v1	cgycucB590
CsaV3_7G027000	CmaCh08G002710	Cucurbita maxima (Rimu)	cmacucB1084
CsaV3_7G027000	CmoCh08G002690	Cucurbita moschata (Rifu)	cmocucB1066
CsaV3_7G027000	Cp4.1LG17g05890	Cucurbita pepo (Zucchini)	cpecucB0423
CsaV3_7G027000	CsGy7G013680	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G027000	Carg05095	Silver-seed gourd	carcucB0102
CsaV3_7G027000	Cla014860	Watermelon (97103) v1	cucwmB592
CsaV3_7G027000	MELO3C012741	Melon (DHL92) v3.5.1	cucmeB542
CsaV3_7G027000	ClCG09G008070	Watermelon (Charleston Gray)	cucwcgB547
CsaV3_7G027000	Lsi02G021740	Bottle gourd (USVL1VR-Ls)	cuclsiB538
CsaV3_7G027000	MELO3C012741.2	Melon (DHL92) v3.6.1	cucmedB531
CsaV3_7G027000	Cla97C09G170730	Watermelon (97103) v2	cucwmbB593
CsaV3_7G027000	Bhi09G001007	Wax gourd	cucwgoB731

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G027000	Silver-seed gourd	carcucB0013
CsaV3_7G027000	Cucurbita maxima (Rimu)	cmacucB0457
CsaV3_7G027000	Cucurbita moschata (Rifu)	cmocucB0450
CsaV3_7G027000	Cucurbita pepo (Zucchini)	cpecucB0182
CsaV3_7G027000	Melon (DHL92) v3.5.1	cucmeB558
CsaV3_7G027000	Melon (DHL92) v3.6.1	cucmedB545