Carg05095 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05095
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	LOB domain-containing protein, putative
Location	Cucurbita_argyrosperma_scaffold_060 : 1372742 .. 1373600 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAACATCAGGTCGGTTTTCTCTCTCGTGTTATATGTTATGTAATTTACTGTGATGTCCCATATTGGTTGAGGAGAAGAACAAATCACCGTTTATAAGGGTGTGGAAACCTTCCCCTATCAAACGTGTTTTAAAGCCCTGAAGAGAAGCCCAAAGAGAACAATATCTGCTAGCGGTGGATCTGGGGCTCGGGCGTTACATTTACTTAACGTATACTCGAACGATAATTTATATAATCGAGCTTAGTACTCGTCGGTTTAGCGTTTTTCGTGTTTTTCGTGATCGGTTATTCGAAACCCTAATTTTTGGAGATGTTAATAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCTGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA

mRNA sequence

ATGGCGGCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAACATCAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCTGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA

Coding sequence (CDS)

ATGGCGGCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAACATCAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCTGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA

Protein sequence

MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFCC

Homology

[Close]

BLAST of Carg05095 vs. NCBI nr
Match: XP_022959894.1 (LOB domain-containing protein 29-like [Cucurbita moschata])

HSP 1 Score: 334.0 bits (855), Expect = 3.3e-88
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLP 60
           MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLP
Sbjct: 1   MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLP 60

Query: 61  VSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYI 120
           VSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYI
Sbjct: 61  VSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYI 120

Query: 121 TRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 180
           TRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF
Sbjct: 121 TRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 180

Query: 181 CC 183
           CC
Sbjct: 181 CC 182

[Close]

BLAST of Carg05095 vs. NCBI nr
Match: XP_023515354.1 (LOB domain-containing protein 29-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.2 bits (840), Expect = 1.8e-86
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSSSPPCGACKFLRRKCVNGCIFAPYF HDLGASHFSAVHKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSSPPCGACKFLRRKCVNGCIFAPYFPHDLGASHFSAVHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYIT 121
           SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYIT
Sbjct: 63  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYIT 122

Query: 122 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 181
           RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC
Sbjct: 123 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 182

Query: 182 C 183
           C
Sbjct: 183 C 183

[Close]

BLAST of Carg05095 vs. NCBI nr
Match: XP_023004822.1 (LOB domain-containing protein 29-like [Cucurbita maxima])

HSP 1 Score: 308.9 bits (790), Expect = 1.1e-80
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 11  CGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVT 70
           CGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRS AAVT
Sbjct: 14  CGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSQAAVT 73

Query: 71  ISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYITRNPNELLYG 130
           ISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQI+LNGYITRNPNELLYG
Sbjct: 74  ISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQILLNGYITRNPNELLYG 133

Query: 131 NSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFCC 183
           NSLSYSDE+LLDLQTWLLEESCSTAAPEFEPTA PYV+MG+ADSNLAGDFCC
Sbjct: 134 NSLSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAGDFCC 185

[Close]

BLAST of Carg05095 vs. NCBI nr
Match: XP_004150342.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical protein Csa_7G373460 [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 132/182 (72.53%), Postives = 141/182 (77.47%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSS+PPCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYIT 121
           SHR  AAVTISYEAQARLQDPIYGC+S I ALQ                 AQI+LN Y T
Sbjct: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTT 122

Query: 122 RNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 181
           RNP ELLY  S   YSD+  LDLQ+WLL ESCS  APE EP A PY +M V DS LAGDF
Sbjct: 123 RNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDF 182

Query: 182 CC 183
           CC
Sbjct: 183 CC 184

[Close]

BLAST of Carg05095 vs. NCBI nr
Match: XP_008447245.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 7.9e-66
Identity = 131/182 (71.98%), Postives = 140/182 (76.92%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSSS PCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYIT 121
           SHR  AAVTISYEAQARLQDPIYGC+S I ALQ                 AQI+LN Y T
Sbjct: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTT 122

Query: 122 RNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 181
           RN  EL Y  S   YSD+  LDLQ+WLL ESC+ AAPEFEP A PY +M V DS LAGDF
Sbjct: 123 RNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAGDF 182

Query: 182 CC 183
           CC
Sbjct: 183 CC 184

[Close]

BLAST of Carg05095 vs. TAIR10
Match: AT3G58190.1 (lateral organ boundaries-domain 29)

HSP 1 Score: 157.9 bits (398), Expect = 5.9e-39
Identity = 81/133 (60.90%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           ++SSSS  PCGACKFLRRKC  GC+FAPYF H+ GASHF+A+HKVFGASNASKLL+HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQ--IILNGY 121
           S R  AA+TISYEAQARLQDPIYGC+S IFALQ                 AQ  I  +  
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 122 ITRNPNELLYGNS 133
            + NPN   YG++
Sbjct: 123 TSENPNS-YYGDT 134

[Close]

BLAST of Carg05095 vs. TAIR10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 142.1 bits (357), Expect = 3.3e-34
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 5  SSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHR 64
          + S  PCGACKFLRR+CV GC+FAPYF H+ GASHF+A+H+VFGASNASKLL+HLP+  R
Sbjct: 2  TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 65 SLAAVTISYEAQARLQDPIYGCISQIFALQ 95
            AA TI YEAQAR QDPIYGC+S IF+LQ
Sbjct: 62 REAATTIYYEAQARRQDPIYGCVSHIFSLQ 91

[Close]

BLAST of Carg05095 vs. TAIR10
Match: AT3G03760.1 (LOB domain-containing protein 20)

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-32
Identity = 67/97 (69.07%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 1   MAASSS---SSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLA 60
           MAA+++   ++ PCGACKFLRRKCV+GCIFAP+F  D GA+ F+AVHKVFGASN SKLL 
Sbjct: 39  MAAATTGTGTASPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLH 98

Query: 61  HLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQ 95
           H+PV+ R  A VTISYEAQARL DP+YGC+S I ALQ
Sbjct: 99  HIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQ 135

[Close]

BLAST of Carg05095 vs. TAIR10
Match: AT2G45420.1 (LOB domain-containing protein 18)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-31
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 11  CGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVT 70
           CGACKFLRRKCV GCIFAPYF  + G+++F+AVHKVFGASN SKLL H+PV  RS A VT
Sbjct: 38  CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query: 71  ISYEAQARLQDPIYGCISQIFALQ 95
           I YEAQAR++DPIYGC++ IFALQ
Sbjct: 98  ICYEAQARIRDPIYGCVAHIFALQ 121

[Close]

BLAST of Carg05095 vs. TAIR10
Match: AT4G00210.1 (LOB domain-containing protein 31)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-30
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 10 PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 69
          PCGACKFLRRKCV  C+FAPYF    G SHF+AVHKVFGASNASKLL  +P S R  A V
Sbjct: 11 PCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDAVV 70

Query: 70 TISYEAQARLQDPIYGCISQIFALQH 96
          T++YEA ARL+DP+YGC+  IFALQH
Sbjct: 71 TLTYEALARLRDPVYGCVGHIFALQH 96

[Close]

BLAST of Carg05095 vs. Swiss-Prot
Match: sp|Q9M2J7|LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37
Identity = 81/133 (60.90%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           ++SSSS  PCGACKFLRRKC  GC+FAPYF H+ GASHF+A+HKVFGASNASKLL+HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQ--IILNGY 121
           S R  AA+TISYEAQARLQDPIYGC+S IFALQ                 AQ  I  +  
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 122 ITRNPNELLYGNS 133
            + NPN   YG++
Sbjct: 123 TSENPNS-YYGDT 134

[Close]

BLAST of Carg05095 vs. Swiss-Prot
Match: sp|Q5UG13|LBD_ORYSJ (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 67/85 (78.82%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 10 PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 69
          PCGACKFLRRKCV GC+FAPYF H+ GA+HF+A+HKVFGASN SKLLAHLP++ R  AAV
Sbjct: 7  PCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAV 66

Query: 70 TISYEAQARLQDPIYGCISQIFALQ 95
          TISYEAQARL+DPIYGC++ IFALQ
Sbjct: 67 TISYEAQARLRDPIYGCVAHIFALQ 91

[Close]

BLAST of Carg05095 vs. Swiss-Prot
Match: sp|Q9SLB6|LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.0e-33
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 5  SSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHR 64
          + S  PCGACKFLRR+CV GC+FAPYF H+ GASHF+A+H+VFGASNASKLL+HLP+  R
Sbjct: 2  TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 65 SLAAVTISYEAQARLQDPIYGCISQIFALQ 95
            AA TI YEAQAR QDPIYGC+S IF+LQ
Sbjct: 62 REAATTIYYEAQARRQDPIYGCVSHIFSLQ 91

[Close]

BLAST of Carg05095 vs. Swiss-Prot
Match: sp|Q9SRV3|LBD20_ARATH (LOB domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=LBD20 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.3e-31
Identity = 67/97 (69.07%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 1   MAASSS---SSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLA 60
           MAA+++   ++ PCGACKFLRRKCV+GCIFAP+F  D GA+ F+AVHKVFGASN SKLL 
Sbjct: 39  MAAATTGTGTASPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLH 98

Query: 61  HLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQ 95
           H+PV+ R  A VTISYEAQARL DP+YGC+S I ALQ
Sbjct: 99  HIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQ 135

[Close]

BLAST of Carg05095 vs. Swiss-Prot
Match: sp|O22131|LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 11  CGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVT 70
           CGACKFLRRKCV GCIFAPYF  + G+++F+AVHKVFGASN SKLL H+PV  RS A VT
Sbjct: 38  CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query: 71  ISYEAQARLQDPIYGCISQIFALQ 95
           I YEAQAR++DPIYGC++ IFALQ
Sbjct: 98  ICYEAQARIRDPIYGCVAHIFALQ 121

[Close]

BLAST of Carg05095 vs. TrEMBL
Match: tr|A0A0A0K5D4|A0A0A0K5D4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 9.5e-68
Identity = 132/182 (72.53%), Postives = 141/182 (77.47%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSS+PPCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYIT 121
           SHR  AAVTISYEAQARLQDPIYGC+S I ALQ                 AQI+LN Y T
Sbjct: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTT 122

Query: 122 RNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 181
           RNP ELLY  S   YSD+  LDLQ+WLL ESCS  APE EP A PY +M V DS LAGDF
Sbjct: 123 RNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDF 182

Query: 182 CC 183
           CC
Sbjct: 183 CC 184

[Close]

BLAST of Carg05095 vs. TrEMBL
Match: tr|A0A1S3BGZ5|A0A1S3BGZ5_CUCME (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 5.2e-66
Identity = 131/182 (71.98%), Postives = 140/182 (76.92%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSSS PCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYIT 121
           SHR  AAVTISYEAQARLQDPIYGC+S I ALQ                 AQI+LN Y T
Sbjct: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTT 122

Query: 122 RNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 181
           RN  EL Y  S   YSD+  LDLQ+WLL ESC+ AAPEFEP A PY +M V DS LAGDF
Sbjct: 123 RNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAGDF 182

Query: 182 CC 183
           CC
Sbjct: 183 CC 184

[Close]

BLAST of Carg05095 vs. TrEMBL
Match: tr|A0A1R3I7B6|A0A1R3I7B6_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14376 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.1e-45
Identity = 98/180 (54.44%), Postives = 117/180 (65.00%), Query Frame = 0


Query: 5   SSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHR 64
           + S  PCGACKFLRRKCV GC+FAPYF H+ GA+HF+A+HKVFGASN SKLLAHLPV+ R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDR 61

Query: 65  SLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYITRNP 124
             AAVTISYEAQARLQDPIYGC+S IFALQ                 AQ ILNG +T NP
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQAAQSILNGSVTSNP 121

Query: 125 NELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEP----TAGPYVQMGVADSNLAGDF 181
           N+  YG      +  L D+Q+W   ++ S  AP+F P    T   Y + G  D N  G++
Sbjct: 122 NDKYYG---KLPNSHLQDVQSWFHPDNPSNMAPQFNPNISTTNSNYCENGFWDPNSLGNY 178

[Close]

BLAST of Carg05095 vs. TrEMBL
Match: tr|B9GS34|B9GS34_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G041100v3 PE=4 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 101/180 (56.11%), Postives = 115/180 (63.89%), Query Frame = 0


Query: 5   SSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHR 64
           + S  PCGACKFLRRKCV GC+FAPYF H+ GA HF+A+HKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGAQHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 65  SLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYITRNP 124
           S AAVTISYEAQARLQDPIYGC+S IFALQ                 AQ  LNG  T NP
Sbjct: 62  SEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQAAQSFLNGSATTNP 121

Query: 125 NELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEP----TAGPYVQMGVADSNLAGDF 181
           N+  YG   SY  E    LQ+W   E+ ST  P+  P       PY + G+ D N  G++
Sbjct: 122 NDKYYGKP-SYPQE----LQSWFHSENSST-VPQLNPNNLTNNMPYCENGIMDPNSMGNY 175

[Close]

BLAST of Carg05095 vs. TrEMBL
Match: tr|B9T847|B9T847_RICCO (LOB domain-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0245570 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.1e-43
Identity = 95/176 (53.98%), Postives = 112/176 (63.64%), Query Frame = 0


Query: 5   SSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHR 64
           + S  PCGACKFLRRKCV GC+FAPYF H+ GA+HF+A+HKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 65  SLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYITRNP 124
             AAVTISYEAQARLQDPIYGC+S IFALQ                 AQ ++NG  T NP
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLQAQLASLKEQAAQTLINGSATANP 121

Query: 125 NELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 181
           N+  YG   S       DLQ+W   E+ +T  P+F P+     + G  D    G +
Sbjct: 122 NDKYYGKPSSLPQ----DLQSWFQSENSNT-IPQFNPSFTTAGENGFLDPYSMGSY 172

The following BLAST results are available for this feature:

BLAST of Carg05095 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959894.1	3.3e-88	100.00	LOB domain-containing protein 29-like [Cucurbita moschata]	[more]
XP_023515354.1	1.8e-86	98.90	LOB domain-containing protein 29-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004822.1	1.1e-80	96.51	LOB domain-containing protein 29-like [Cucurbita maxima]	[more]
XP_004150342.1	1.4e-67	72.53	PREDICTED: LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypoth...	[more]
XP_008447245.1	7.9e-66	71.98	PREDICTED: LOB domain-containing protein 29 [Cucumis melo]	[more]

BLAST of Carg05095 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58190.1	5.9e-39	60.90	lateral organ boundaries-domain 29	[more]
AT2G42440.1	3.3e-34	72.22	Lateral organ boundaries (LOB) domain family protein	[more]
AT3G03760.1	1.8e-32	69.07	LOB domain-containing protein 20	[more]
AT2G45420.1	1.2e-31	73.81	LOB domain-containing protein 18	[more]
AT4G00210.1	1.3e-30	70.93	LOB domain-containing protein 31	[more]

BLAST of Carg05095 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M2J7\|LBD29_ARATH	1.1e-37	60.90	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
sp\|Q5UG13\|LBD_ORYSJ	1.4e-34	78.82	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
sp\|Q9SLB6\|LBD17_ARATH	6.0e-33	72.22	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
sp\|Q9SRV3\|LBD20_ARATH	3.3e-31	69.07	LOB domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=LBD20 PE=2 S...	[more]
sp\|O22131\|LBD18_ARATH	2.1e-30	73.81	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]

BLAST of Carg05095 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5D4\|A0A0A0K5D4_CUCSA	9.5e-68	72.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=4 SV=1	[more]
tr\|A0A1S3BGZ5\|A0A1S3BGZ5_CUCME	5.2e-66	71.98	LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=4 SV...	[more]
tr\|A0A1R3I7B6\|A0A1R3I7B6_COCAP	5.1e-45	54.44	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14376 PE=4 ...	[more]
tr\|B9GS34\|B9GS34_POPTR	3.3e-44	56.11	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G041100v3 PE=...	[more]
tr\|B9T847\|B9T847_RICCO	8.1e-43	53.98	LOB domain-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0245...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05095-RA	Carg05095-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 10..107 e-value: 3.0E-34 score: 117.4
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 9..111 score: 21.705
None	No IPR available	PANTHER	PTHR31529	FAMILY NOT NAMED	coord: 7..162
None	No IPR available	PANTHER	PTHR31529:SF2	SUBFAMILY NOT NAMED	coord: 7..162

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05095	Cla014860	Watermelon (97103) v1	carwmB0079
Carg05095	Csa7G373460	Cucumber (Chinese Long) v2	carcuB0095
Carg05095	MELO3C012741	Melon (DHL92) v3.5.1	carmeB0085
Carg05095	ClCG09G008070	Watermelon (Charleston Gray)	carwcgB0080
Carg05095	CSPI07G15230	Wild cucumber (PI 183967)	carcpiB0099
Carg05095	Cucsa.388160	Cucumber (Gy14) v1	carcgyB0104
Carg05095	CmaCh08G002710	Cucurbita maxima (Rimu)	carcmaB0112
Carg05095	CmoCh08G002690	Cucurbita moschata (Rifu)	carcmoB0119
Carg05095	Lsi02G021740	Bottle gourd (USVL1VR-Ls)	carlsiB074
Carg05095	Cp4.1LG17g05890	Cucurbita pepo (Zucchini)	carcpeB0126
Carg05095	CsGy7G013680	Cucumber (Gy14) v2	carcgybB0095
Carg05095	MELO3C012741.2	Melon (DHL92) v3.6.1	carmedB0086
Carg05095	CsaV3_7G027000	Cucumber (Chinese Long) v3	carcucB0102
Carg05095	Cla97C09G170730	Watermelon (97103) v2	carwmbB0085
Carg05095	Bhi09G001007	Wax gourd	carwgoB0098

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05095	Melon (DHL92) v3.5.1	carmeB0087
Carg05095	Melon (DHL92) v3.6.1	carmedB0088
Carg05095	Silver-seed gourd	carcarB009
Carg05095	Cucurbita maxima (Rimu)	carcmaB0104
Carg05095	Cucurbita moschata (Rifu)	carcmoB0112
Carg05095	Cucurbita pepo (Zucchini)	carcpeB0116